Experiment: carbon source Sucrose 0.25mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4742 and Pf1N1B4_4743 are separated by 6 nucleotides Pf1N1B4_4743 and Pf1N1B4_4744 overlap by 4 nucleotides Pf1N1B4_4744 and Pf1N1B4_4745 are separated by 14 nucleotides Pf1N1B4_4745 and Pf1N1B4_4746 are separated by 132 nucleotides Pf1N1B4_4746 and Pf1N1B4_4747 are separated by 169 nucleotides
Pf1N1B4_4742 - Cold-shock DNA-binding domain, at 5,239,570 to 5,240,001
_4742
Pf1N1B4_4743 - FIG00955061: hypothetical protein, at 5,240,008 to 5,240,367
_4743
Pf1N1B4_4744 - Transcriptional regulator, LysR family, at 5,240,364 to 5,240,957
_4744
Pf1N1B4_4745 - Transcriptional regulator, LysR family, at 5,240,972 to 5,241,271
_4745
Pf1N1B4_4746 - FMN-dependent NADH-azoreductase, at 5,241,404 to 5,242,015
_4746
Pf1N1B4_4747 - Probable lipoprotein signal peptide, at 5,242,185 to 5,243,222
_4747
Position (kb) 5240
5241
5242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5240.017 kb on + strand at 5240.017 kb on + strand at 5240.294 kb on + strand, within Pf1N1B4_4743 at 5240.295 kb on - strand, within Pf1N1B4_4743 at 5240.295 kb on - strand, within Pf1N1B4_4743 at 5240.499 kb on + strand, within Pf1N1B4_4744 at 5240.499 kb on + strand, within Pf1N1B4_4744 at 5240.500 kb on - strand, within Pf1N1B4_4744 at 5240.539 kb on + strand, within Pf1N1B4_4744 at 5240.539 kb on + strand, within Pf1N1B4_4744 at 5240.539 kb on + strand, within Pf1N1B4_4744 at 5240.558 kb on + strand, within Pf1N1B4_4744 at 5240.559 kb on - strand, within Pf1N1B4_4744 at 5240.559 kb on - strand, within Pf1N1B4_4744 at 5241.078 kb on + strand, within Pf1N1B4_4745 at 5241.317 kb on + strand at 5241.412 kb on - strand at 5241.412 kb on - strand at 5241.690 kb on - strand, within Pf1N1B4_4746 at 5241.761 kb on + strand at 5241.870 kb on - strand at 5242.013 kb on + strand at 5242.033 kb on - strand at 5242.149 kb on - strand at 5242.165 kb on + strand at 5242.168 kb on + strand at 5242.168 kb on + strand at 5242.168 kb on + strand at 5242.169 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 0.25mM remove 5,240,017 + +0.5 5,240,017 + -0.0 5,240,294 + Pf1N1B4_4743 0.79 +2.0 5,240,295 - Pf1N1B4_4743 0.80 +0.5 5,240,295 - Pf1N1B4_4743 0.80 +2.1 5,240,499 + Pf1N1B4_4744 0.23 -1.0 5,240,499 + Pf1N1B4_4744 0.23 -1.7 5,240,500 - Pf1N1B4_4744 0.23 -3.2 5,240,539 + Pf1N1B4_4744 0.29 +2.8 5,240,539 + Pf1N1B4_4744 0.29 +2.9 5,240,539 + Pf1N1B4_4744 0.29 -2.1 5,240,558 + Pf1N1B4_4744 0.33 +0.6 5,240,559 - Pf1N1B4_4744 0.33 +2.5 5,240,559 - Pf1N1B4_4744 0.33 +0.6 5,241,078 + Pf1N1B4_4745 0.35 +1.4 5,241,317 + -1.1 5,241,412 - -2.9 5,241,412 - +2.2 5,241,690 - Pf1N1B4_4746 0.47 +2.5 5,241,761 + +4.3 5,241,870 - -1.8 5,242,013 + +1.6 5,242,033 - -1.6 5,242,149 - -0.9 5,242,165 + +0.8 5,242,168 + -2.6 5,242,168 + +1.6 5,242,168 + +0.5 5,242,169 - -0.9
Or see this region's nucleotide sequence