Experiment: carbon source Sucrose 0.25mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_31 and Pf1N1B4_32 are separated by 179 nucleotides Pf1N1B4_32 and Pf1N1B4_33 are separated by 174 nucleotides Pf1N1B4_33 and Pf1N1B4_34 are separated by 152 nucleotides
Pf1N1B4_31 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 35,896 to 37,017
_31
Pf1N1B4_32 - Transcriptional regulator, TetR family, at 37,197 to 37,817
_32
Pf1N1B4_33 - Outer membrane component of tripartite multidrug resistance system, at 37,992 to 39,422
_33
Pf1N1B4_34 - Xanthine permease, at 39,575 to 41,029
_34
Position (kb) 37
38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 37.017 kb on + strand at 37.267 kb on + strand at 37.465 kb on + strand, within Pf1N1B4_32 at 37.482 kb on - strand at 37.558 kb on - strand, within Pf1N1B4_32 at 37.608 kb on - strand at 37.657 kb on + strand, within Pf1N1B4_32 at 37.657 kb on + strand, within Pf1N1B4_32 at 37.657 kb on + strand, within Pf1N1B4_32 at 37.658 kb on - strand, within Pf1N1B4_32 at 37.658 kb on - strand at 37.658 kb on - strand at 37.658 kb on - strand at 37.658 kb on - strand, within Pf1N1B4_32 at 37.658 kb on - strand, within Pf1N1B4_32 at 37.658 kb on - strand, within Pf1N1B4_32 at 37.658 kb on - strand at 37.687 kb on - strand, within Pf1N1B4_32 at 37.933 kb on + strand at 37.934 kb on - strand at 38.084 kb on + strand at 38.141 kb on - strand, within Pf1N1B4_33 at 38.295 kb on + strand, within Pf1N1B4_33 at 38.316 kb on + strand, within Pf1N1B4_33 at 38.317 kb on - strand, within Pf1N1B4_33 at 38.317 kb on - strand, within Pf1N1B4_33 at 38.463 kb on + strand at 38.463 kb on + strand, within Pf1N1B4_33 at 38.464 kb on - strand, within Pf1N1B4_33 at 38.515 kb on + strand, within Pf1N1B4_33 at 38.515 kb on + strand, within Pf1N1B4_33 at 38.515 kb on + strand, within Pf1N1B4_33 at 38.515 kb on + strand, within Pf1N1B4_33 at 38.516 kb on - strand, within Pf1N1B4_33 at 38.516 kb on - strand, within Pf1N1B4_33 at 38.703 kb on + strand at 38.703 kb on + strand at 38.703 kb on + strand, within Pf1N1B4_33 at 38.703 kb on + strand, within Pf1N1B4_33 at 38.704 kb on - strand at 38.704 kb on - strand at 38.704 kb on - strand, within Pf1N1B4_33 at 38.706 kb on - strand, within Pf1N1B4_33 at 38.721 kb on - strand, within Pf1N1B4_33 at 38.863 kb on - strand, within Pf1N1B4_33 at 38.904 kb on - strand, within Pf1N1B4_33 at 38.968 kb on + strand, within Pf1N1B4_33 at 38.968 kb on + strand, within Pf1N1B4_33 at 38.969 kb on - strand at 39.156 kb on + strand, within Pf1N1B4_33 at 39.189 kb on + strand, within Pf1N1B4_33 at 39.548 kb on + strand at 39.691 kb on - strand at 39.883 kb on - strand, within Pf1N1B4_34
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 0.25mM remove 37,017 + +0.2 37,267 + -2.6 37,465 + Pf1N1B4_32 0.43 +1.3 37,482 - +0.9 37,558 - Pf1N1B4_32 0.58 +0.8 37,608 - -0.5 37,657 + Pf1N1B4_32 0.74 +0.5 37,657 + Pf1N1B4_32 0.74 -2.0 37,657 + Pf1N1B4_32 0.74 +1.4 37,658 - Pf1N1B4_32 0.74 -0.5 37,658 - -0.5 37,658 - -1.4 37,658 - -0.0 37,658 - Pf1N1B4_32 0.74 +1.1 37,658 - Pf1N1B4_32 0.74 -1.7 37,658 - Pf1N1B4_32 0.74 -3.1 37,658 - -0.3 37,687 - Pf1N1B4_32 0.79 +1.0 37,933 + -2.2 37,934 - -0.5 38,084 + -0.9 38,141 - Pf1N1B4_33 0.10 +1.7 38,295 + Pf1N1B4_33 0.21 +3.2 38,316 + Pf1N1B4_33 0.23 +1.3 38,317 - Pf1N1B4_33 0.23 +2.1 38,317 - Pf1N1B4_33 0.23 -2.1 38,463 + -1.3 38,463 + Pf1N1B4_33 0.33 +1.6 38,464 - Pf1N1B4_33 0.33 +0.1 38,515 + Pf1N1B4_33 0.37 -2.0 38,515 + Pf1N1B4_33 0.37 +1.3 38,515 + Pf1N1B4_33 0.37 +0.4 38,515 + Pf1N1B4_33 0.37 +0.1 38,516 - Pf1N1B4_33 0.37 -2.5 38,516 - Pf1N1B4_33 0.37 +1.8 38,703 + -1.5 38,703 + +4.1 38,703 + Pf1N1B4_33 0.50 +2.6 38,703 + Pf1N1B4_33 0.50 +0.4 38,704 - +2.3 38,704 - -2.0 38,704 - Pf1N1B4_33 0.50 +1.4 38,706 - Pf1N1B4_33 0.50 +0.7 38,721 - Pf1N1B4_33 0.51 -2.2 38,863 - Pf1N1B4_33 0.61 -0.8 38,904 - Pf1N1B4_33 0.64 +1.2 38,968 + Pf1N1B4_33 0.68 -0.3 38,968 + Pf1N1B4_33 0.68 -0.0 38,969 - -1.5 39,156 + Pf1N1B4_33 0.81 -1.8 39,189 + Pf1N1B4_33 0.84 -0.6 39,548 + +1.0 39,691 - -0.5 39,883 - Pf1N1B4_34 0.21 +2.1
Or see this region's nucleotide sequence