Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2709

Experiment: carbon source Sucrose 0.25mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2708 and Pf1N1B4_2709 are separated by 15 nucleotidesPf1N1B4_2709 and Pf1N1B4_2710 are separated by 5 nucleotidesPf1N1B4_2710 and Pf1N1B4_2711 overlap by 8 nucleotides Pf1N1B4_2708 - Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE, at 3,045,617 to 3,047,140 _2708 Pf1N1B4_2709 - Magnesium and cobalt efflux protein CorC, at 3,047,156 to 3,047,995 _2709 Pf1N1B4_2710 - Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly, at 3,048,001 to 3,048,495 _2710 Pf1N1B4_2711 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 3,048,488 to 3,049,504 _2711 Position (kb) 3047 3048Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3047.168 kb on - strandat 3047.168 kb on - strandat 3047.168 kb on - strandat 3047.168 kb on - strandat 3047.404 kb on - strand, within Pf1N1B4_2709at 3047.404 kb on - strand, within Pf1N1B4_2709at 3047.404 kb on - strand, within Pf1N1B4_2709at 3047.404 kb on - strand, within Pf1N1B4_2709at 3047.404 kb on - strand, within Pf1N1B4_2709at 3047.404 kb on - strand, within Pf1N1B4_2709at 3047.404 kb on - strand, within Pf1N1B4_2709at 3047.807 kb on + strand, within Pf1N1B4_2709at 3048.023 kb on - strandat 3048.838 kb on - strand, within Pf1N1B4_2711at 3048.838 kb on - strand, within Pf1N1B4_2711at 3048.889 kb on - strand, within Pf1N1B4_2711

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 0.25mM
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3,047,168 - -1.9
3,047,168 - -1.9
3,047,168 - -0.8
3,047,168 - +0.4
3,047,404 - Pf1N1B4_2709 0.30 -1.8
3,047,404 - Pf1N1B4_2709 0.30 -0.7
3,047,404 - Pf1N1B4_2709 0.30 -2.4
3,047,404 - Pf1N1B4_2709 0.30 -1.2
3,047,404 - Pf1N1B4_2709 0.30 +0.1
3,047,404 - Pf1N1B4_2709 0.30 -0.7
3,047,404 - Pf1N1B4_2709 0.30 -1.0
3,047,807 + Pf1N1B4_2709 0.78 -1.7
3,048,023 - +3.1
3,048,838 - Pf1N1B4_2711 0.34 +0.3
3,048,838 - Pf1N1B4_2711 0.34 -1.2
3,048,889 - Pf1N1B4_2711 0.39 +0.3

Or see this region's nucleotide sequence