Experiment: carbon source Sucrose 0.25mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1988 and Pf1N1B4_1989 overlap by 1 nucleotides Pf1N1B4_1989 and Pf1N1B4_1990 overlap by 4 nucleotides Pf1N1B4_1990 and Pf1N1B4_1991 are separated by 86 nucleotides
Pf1N1B4_1988 - Zinc ABC transporter, inner membrane permease protein ZnuB, at 2,273,679 to 2,274,545
_1988
Pf1N1B4_1989 - Zinc ABC transporter, ATP-binding protein ZnuC, at 2,274,545 to 2,275,213
_1989
Pf1N1B4_1990 - GTP cyclohydrolase I (EC 3.5.4.16) type 2, at 2,275,210 to 2,276,106
_1990
Pf1N1B4_1991 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 2,276,193 to 2,277,401
_1991
Position (kb)
2275
2276
2277 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2274.426 kb on + strand, within Pf1N1B4_1988 at 2274.427 kb on - strand, within Pf1N1B4_1988 at 2274.624 kb on - strand, within Pf1N1B4_1989 at 2275.485 kb on - strand, within Pf1N1B4_1990 at 2275.485 kb on - strand, within Pf1N1B4_1990 at 2275.673 kb on + strand, within Pf1N1B4_1990 at 2275.674 kb on - strand, within Pf1N1B4_1990 at 2275.792 kb on + strand, within Pf1N1B4_1990 at 2275.792 kb on + strand at 2275.792 kb on + strand, within Pf1N1B4_1990 at 2275.793 kb on - strand, within Pf1N1B4_1990 at 2275.793 kb on - strand, within Pf1N1B4_1990 at 2275.793 kb on - strand, within Pf1N1B4_1990 at 2275.793 kb on - strand, within Pf1N1B4_1990 at 2275.793 kb on - strand, within Pf1N1B4_1990 at 2275.815 kb on - strand, within Pf1N1B4_1990 at 2275.919 kb on + strand, within Pf1N1B4_1990 at 2275.919 kb on + strand, within Pf1N1B4_1990 at 2275.920 kb on - strand, within Pf1N1B4_1990 at 2275.932 kb on + strand, within Pf1N1B4_1990 at 2275.932 kb on + strand, within Pf1N1B4_1990 at 2275.932 kb on + strand, within Pf1N1B4_1990 at 2275.932 kb on + strand, within Pf1N1B4_1990 at 2275.932 kb on + strand, within Pf1N1B4_1990 at 2275.932 kb on + strand, within Pf1N1B4_1990 at 2275.932 kb on + strand, within Pf1N1B4_1990 at 2275.932 kb on + strand, within Pf1N1B4_1990 at 2275.932 kb on + strand, within Pf1N1B4_1990 at 2275.932 kb on + strand, within Pf1N1B4_1990 at 2275.932 kb on + strand, within Pf1N1B4_1990 at 2275.932 kb on + strand, within Pf1N1B4_1990 at 2275.932 kb on + strand, within Pf1N1B4_1990 at 2275.932 kb on + strand, within Pf1N1B4_1990 at 2275.932 kb on + strand, within Pf1N1B4_1990 at 2275.933 kb on - strand, within Pf1N1B4_1990 at 2275.933 kb on - strand, within Pf1N1B4_1990 at 2275.933 kb on - strand, within Pf1N1B4_1990 at 2275.933 kb on - strand, within Pf1N1B4_1990 at 2276.343 kb on + strand, within Pf1N1B4_1991 at 2276.343 kb on + strand, within Pf1N1B4_1991 at 2276.343 kb on + strand, within Pf1N1B4_1991 at 2276.344 kb on - strand, within Pf1N1B4_1991 at 2276.344 kb on - strand, within Pf1N1B4_1991 at 2276.344 kb on - strand, within Pf1N1B4_1991 at 2276.344 kb on - strand, within Pf1N1B4_1991 at 2276.344 kb on - strand, within Pf1N1B4_1991 at 2276.344 kb on - strand, within Pf1N1B4_1991 at 2276.344 kb on - strand, within Pf1N1B4_1991 at 2276.426 kb on - strand, within Pf1N1B4_1991 at 2276.438 kb on + strand, within Pf1N1B4_1991 at 2276.439 kb on - strand, within Pf1N1B4_1991 at 2276.941 kb on - strand, within Pf1N1B4_1991
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 0.25mM remove 2,274,426 + Pf1N1B4_1988 0.86 -0.1 2,274,427 - Pf1N1B4_1988 0.86 +0.0 2,274,624 - Pf1N1B4_1989 0.12 -0.5 2,275,485 - Pf1N1B4_1990 0.31 -0.7 2,275,485 - Pf1N1B4_1990 0.31 -0.8 2,275,673 + Pf1N1B4_1990 0.52 +1.9 2,275,674 - Pf1N1B4_1990 0.52 +0.4 2,275,792 + Pf1N1B4_1990 0.65 +0.8 2,275,792 + -0.2 2,275,792 + Pf1N1B4_1990 0.65 +0.4 2,275,793 - Pf1N1B4_1990 0.65 -1.5 2,275,793 - Pf1N1B4_1990 0.65 -0.1 2,275,793 - Pf1N1B4_1990 0.65 +1.8 2,275,793 - Pf1N1B4_1990 0.65 +1.6 2,275,793 - Pf1N1B4_1990 0.65 -1.1 2,275,815 - Pf1N1B4_1990 0.67 -1.7 2,275,919 + Pf1N1B4_1990 0.79 +0.8 2,275,919 + Pf1N1B4_1990 0.79 -1.5 2,275,920 - Pf1N1B4_1990 0.79 -0.2 2,275,932 + Pf1N1B4_1990 0.80 -1.5 2,275,932 + Pf1N1B4_1990 0.80 -0.7 2,275,932 + Pf1N1B4_1990 0.80 -1.9 2,275,932 + Pf1N1B4_1990 0.80 +0.0 2,275,932 + Pf1N1B4_1990 0.80 -0.8 2,275,932 + Pf1N1B4_1990 0.80 +0.3 2,275,932 + Pf1N1B4_1990 0.80 -1.9 2,275,932 + Pf1N1B4_1990 0.80 +0.3 2,275,932 + Pf1N1B4_1990 0.80 +0.9 2,275,932 + Pf1N1B4_1990 0.80 -0.3 2,275,932 + Pf1N1B4_1990 0.80 -1.2 2,275,932 + Pf1N1B4_1990 0.80 -1.5 2,275,932 + Pf1N1B4_1990 0.80 +0.3 2,275,932 + Pf1N1B4_1990 0.80 -0.5 2,275,932 + Pf1N1B4_1990 0.80 +2.2 2,275,933 - Pf1N1B4_1990 0.81 +1.2 2,275,933 - Pf1N1B4_1990 0.81 -1.0 2,275,933 - Pf1N1B4_1990 0.81 +2.2 2,275,933 - Pf1N1B4_1990 0.81 -0.5 2,276,343 + Pf1N1B4_1991 0.12 -0.1 2,276,343 + Pf1N1B4_1991 0.12 +2.6 2,276,343 + Pf1N1B4_1991 0.12 -0.1 2,276,344 - Pf1N1B4_1991 0.12 -0.8 2,276,344 - Pf1N1B4_1991 0.12 -0.7 2,276,344 - Pf1N1B4_1991 0.12 +1.7 2,276,344 - Pf1N1B4_1991 0.12 +1.3 2,276,344 - Pf1N1B4_1991 0.12 -0.2 2,276,344 - Pf1N1B4_1991 0.12 +1.7 2,276,344 - Pf1N1B4_1991 0.12 -1.4 2,276,426 - Pf1N1B4_1991 0.19 -0.5 2,276,438 + Pf1N1B4_1991 0.20 +0.1 2,276,439 - Pf1N1B4_1991 0.20 -2.2 2,276,941 - Pf1N1B4_1991 0.62 -1.5
Or see this region's nucleotide sequence