Experiment: carbon source Sucrose 0.25mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1217 and Pf1N1B4_1218 overlap by 4 nucleotides Pf1N1B4_1218 and Pf1N1B4_1219 are separated by 130 nucleotides
Pf1N1B4_1217 - RND multidrug efflux transporter; Acriflavin resistance protein, at 1,378,441 to 1,381,518
_1217
Pf1N1B4_1218 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 1,381,515 to 1,382,618
_1218
Pf1N1B4_1219 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2), at 1,382,749 to 1,383,906
_1219
Position (kb)
1381
1382
1383 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1380.515 kb on + strand, within Pf1N1B4_1217 at 1380.516 kb on - strand, within Pf1N1B4_1217 at 1380.516 kb on - strand, within Pf1N1B4_1217 at 1380.571 kb on + strand, within Pf1N1B4_1217 at 1380.571 kb on + strand at 1380.572 kb on - strand, within Pf1N1B4_1217 at 1380.851 kb on + strand, within Pf1N1B4_1217 at 1380.851 kb on + strand, within Pf1N1B4_1217 at 1380.851 kb on + strand, within Pf1N1B4_1217 at 1380.851 kb on + strand, within Pf1N1B4_1217 at 1380.851 kb on + strand, within Pf1N1B4_1217 at 1380.851 kb on + strand, within Pf1N1B4_1217 at 1380.851 kb on + strand, within Pf1N1B4_1217 at 1380.851 kb on + strand, within Pf1N1B4_1217 at 1380.851 kb on + strand, within Pf1N1B4_1217 at 1380.851 kb on + strand, within Pf1N1B4_1217 at 1380.851 kb on + strand, within Pf1N1B4_1217 at 1380.851 kb on + strand, within Pf1N1B4_1217 at 1380.851 kb on + strand, within Pf1N1B4_1217 at 1380.851 kb on + strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1380.852 kb on - strand, within Pf1N1B4_1217 at 1381.053 kb on - strand, within Pf1N1B4_1217 at 1381.053 kb on - strand, within Pf1N1B4_1217 at 1381.053 kb on - strand, within Pf1N1B4_1217 at 1381.100 kb on + strand, within Pf1N1B4_1217 at 1381.101 kb on - strand, within Pf1N1B4_1217 at 1381.113 kb on + strand, within Pf1N1B4_1217 at 1381.114 kb on - strand, within Pf1N1B4_1217 at 1381.114 kb on - strand, within Pf1N1B4_1217 at 1381.148 kb on + strand, within Pf1N1B4_1217 at 1381.148 kb on + strand, within Pf1N1B4_1217 at 1381.149 kb on - strand, within Pf1N1B4_1217 at 1381.149 kb on - strand, within Pf1N1B4_1217 at 1381.149 kb on - strand, within Pf1N1B4_1217 at 1381.283 kb on + strand at 1381.283 kb on + strand at 1381.283 kb on + strand at 1381.720 kb on + strand, within Pf1N1B4_1218 at 1381.721 kb on - strand, within Pf1N1B4_1218 at 1381.721 kb on - strand, within Pf1N1B4_1218 at 1381.721 kb on - strand, within Pf1N1B4_1218 at 1381.753 kb on + strand, within Pf1N1B4_1218 at 1381.753 kb on + strand, within Pf1N1B4_1218 at 1381.753 kb on + strand, within Pf1N1B4_1218 at 1381.753 kb on + strand, within Pf1N1B4_1218 at 1381.754 kb on - strand, within Pf1N1B4_1218 at 1381.754 kb on - strand, within Pf1N1B4_1218 at 1381.754 kb on - strand, within Pf1N1B4_1218 at 1381.819 kb on + strand, within Pf1N1B4_1218 at 1381.819 kb on + strand, within Pf1N1B4_1218 at 1381.819 kb on + strand, within Pf1N1B4_1218 at 1381.819 kb on + strand, within Pf1N1B4_1218 at 1381.819 kb on + strand, within Pf1N1B4_1218 at 1381.819 kb on + strand, within Pf1N1B4_1218 at 1381.819 kb on + strand, within Pf1N1B4_1218 at 1381.819 kb on + strand, within Pf1N1B4_1218 at 1381.819 kb on + strand, within Pf1N1B4_1218 at 1381.819 kb on + strand, within Pf1N1B4_1218 at 1381.819 kb on + strand, within Pf1N1B4_1218 at 1381.819 kb on + strand, within Pf1N1B4_1218 at 1381.819 kb on + strand, within Pf1N1B4_1218 at 1381.819 kb on + strand, within Pf1N1B4_1218 at 1381.819 kb on + strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.820 kb on - strand, within Pf1N1B4_1218 at 1381.977 kb on + strand, within Pf1N1B4_1218 at 1381.978 kb on - strand, within Pf1N1B4_1218 at 1381.978 kb on - strand, within Pf1N1B4_1218 at 1382.007 kb on - strand, within Pf1N1B4_1218 at 1382.069 kb on - strand, within Pf1N1B4_1218 at 1382.069 kb on - strand, within Pf1N1B4_1218 at 1382.069 kb on - strand, within Pf1N1B4_1218 at 1382.123 kb on + strand, within Pf1N1B4_1218 at 1382.124 kb on - strand, within Pf1N1B4_1218 at 1382.179 kb on + strand, within Pf1N1B4_1218 at 1382.179 kb on + strand, within Pf1N1B4_1218 at 1382.180 kb on - strand, within Pf1N1B4_1218 at 1382.180 kb on - strand at 1382.450 kb on - strand, within Pf1N1B4_1218 at 1382.450 kb on - strand, within Pf1N1B4_1218 at 1382.452 kb on + strand, within Pf1N1B4_1218 at 1382.453 kb on - strand, within Pf1N1B4_1218 at 1382.453 kb on - strand, within Pf1N1B4_1218 at 1382.453 kb on - strand, within Pf1N1B4_1218 at 1382.453 kb on - strand, within Pf1N1B4_1218 at 1382.453 kb on - strand, within Pf1N1B4_1218 at 1382.453 kb on - strand, within Pf1N1B4_1218 at 1382.453 kb on - strand, within Pf1N1B4_1218 at 1382.453 kb on - strand, within Pf1N1B4_1218 at 1382.453 kb on - strand, within Pf1N1B4_1218 at 1382.453 kb on - strand, within Pf1N1B4_1218 at 1382.453 kb on - strand, within Pf1N1B4_1218 at 1382.453 kb on - strand, within Pf1N1B4_1218 at 1382.453 kb on - strand, within Pf1N1B4_1218 at 1382.458 kb on + strand, within Pf1N1B4_1218 at 1382.459 kb on - strand, within Pf1N1B4_1218 at 1382.459 kb on - strand, within Pf1N1B4_1218 at 1382.604 kb on - strand at 1382.700 kb on - strand at 1382.736 kb on + strand at 1382.737 kb on - strand at 1382.823 kb on + strand at 1382.823 kb on + strand at 1382.823 kb on + strand at 1382.824 kb on - strand at 1382.883 kb on - strand, within Pf1N1B4_1219 at 1382.883 kb on - strand, within Pf1N1B4_1219 at 1382.883 kb on - strand, within Pf1N1B4_1219 at 1382.883 kb on - strand, within Pf1N1B4_1219 at 1383.200 kb on + strand, within Pf1N1B4_1219 at 1383.203 kb on + strand, within Pf1N1B4_1219 at 1383.216 kb on - strand, within Pf1N1B4_1219 at 1383.229 kb on - strand, within Pf1N1B4_1219 at 1383.440 kb on - strand, within Pf1N1B4_1219 at 1383.456 kb on - strand, within Pf1N1B4_1219 at 1383.456 kb on - strand, within Pf1N1B4_1219 at 1383.497 kb on + strand, within Pf1N1B4_1219 at 1383.569 kb on + strand, within Pf1N1B4_1219 at 1383.569 kb on + strand, within Pf1N1B4_1219 at 1383.570 kb on - strand, within Pf1N1B4_1219 at 1383.570 kb on - strand, within Pf1N1B4_1219 at 1383.570 kb on - strand, within Pf1N1B4_1219 at 1383.570 kb on - strand, within Pf1N1B4_1219 at 1383.570 kb on - strand, within Pf1N1B4_1219 at 1383.570 kb on - strand, within Pf1N1B4_1219 at 1383.570 kb on - strand, within Pf1N1B4_1219 at 1383.570 kb on - strand, within Pf1N1B4_1219 at 1383.570 kb on - strand, within Pf1N1B4_1219 at 1383.570 kb on - strand, within Pf1N1B4_1219 at 1383.570 kb on - strand, within Pf1N1B4_1219 at 1383.570 kb on - strand, within Pf1N1B4_1219 at 1383.599 kb on + strand, within Pf1N1B4_1219 at 1383.600 kb on - strand, within Pf1N1B4_1219
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 0.25mM remove 1,380,515 + Pf1N1B4_1217 0.67 -1.1 1,380,516 - Pf1N1B4_1217 0.67 +0.6 1,380,516 - Pf1N1B4_1217 0.67 -1.2 1,380,571 + Pf1N1B4_1217 0.69 -1.5 1,380,571 + -0.7 1,380,572 - Pf1N1B4_1217 0.69 -2.9 1,380,851 + Pf1N1B4_1217 0.78 -3.2 1,380,851 + Pf1N1B4_1217 0.78 -1.5 1,380,851 + Pf1N1B4_1217 0.78 -0.9 1,380,851 + Pf1N1B4_1217 0.78 -3.0 1,380,851 + Pf1N1B4_1217 0.78 -1.4 1,380,851 + Pf1N1B4_1217 0.78 -1.9 1,380,851 + Pf1N1B4_1217 0.78 -1.6 1,380,851 + Pf1N1B4_1217 0.78 +0.1 1,380,851 + Pf1N1B4_1217 0.78 -0.4 1,380,851 + Pf1N1B4_1217 0.78 +0.6 1,380,851 + Pf1N1B4_1217 0.78 -1.5 1,380,851 + Pf1N1B4_1217 0.78 -2.9 1,380,851 + Pf1N1B4_1217 0.78 +1.6 1,380,851 + Pf1N1B4_1217 0.78 -3.1 1,380,852 - Pf1N1B4_1217 0.78 -1.8 1,380,852 - Pf1N1B4_1217 0.78 -1.3 1,380,852 - Pf1N1B4_1217 0.78 -1.7 1,380,852 - Pf1N1B4_1217 0.78 -0.7 1,380,852 - Pf1N1B4_1217 0.78 -1.4 1,380,852 - Pf1N1B4_1217 0.78 -1.2 1,380,852 - Pf1N1B4_1217 0.78 +0.4 1,380,852 - -0.9 1,380,852 - Pf1N1B4_1217 0.78 -0.9 1,380,852 - Pf1N1B4_1217 0.78 -1.2 1,380,852 - Pf1N1B4_1217 0.78 -0.6 1,380,852 - Pf1N1B4_1217 0.78 -1.1 1,380,852 - Pf1N1B4_1217 0.78 -2.8 1,380,852 - Pf1N1B4_1217 0.78 -0.6 1,380,852 - Pf1N1B4_1217 0.78 -3.1 1,380,852 - Pf1N1B4_1217 0.78 +0.0 1,380,852 - Pf1N1B4_1217 0.78 -1.3 1,380,852 - Pf1N1B4_1217 0.78 -1.3 1,380,852 - Pf1N1B4_1217 0.78 -1.6 1,380,852 - +1.1 1,380,852 - Pf1N1B4_1217 0.78 -0.7 1,380,852 - Pf1N1B4_1217 0.78 -2.4 1,380,852 - Pf1N1B4_1217 0.78 +1.0 1,380,852 - Pf1N1B4_1217 0.78 -0.3 1,380,852 - Pf1N1B4_1217 0.78 -0.2 1,381,053 - Pf1N1B4_1217 0.85 -1.4 1,381,053 - Pf1N1B4_1217 0.85 +1.1 1,381,053 - Pf1N1B4_1217 0.85 -2.0 1,381,100 + Pf1N1B4_1217 0.86 +1.6 1,381,101 - Pf1N1B4_1217 0.86 -0.9 1,381,113 + Pf1N1B4_1217 0.87 -2.1 1,381,114 - Pf1N1B4_1217 0.87 +2.0 1,381,114 - Pf1N1B4_1217 0.87 -1.7 1,381,148 + Pf1N1B4_1217 0.88 -1.4 1,381,148 + Pf1N1B4_1217 0.88 -0.5 1,381,149 - Pf1N1B4_1217 0.88 -2.1 1,381,149 - Pf1N1B4_1217 0.88 -0.6 1,381,149 - Pf1N1B4_1217 0.88 -2.2 1,381,283 + -0.4 1,381,283 + -1.6 1,381,283 + -0.2 1,381,720 + Pf1N1B4_1218 0.19 -1.5 1,381,721 - Pf1N1B4_1218 0.19 -1.4 1,381,721 - Pf1N1B4_1218 0.19 -1.7 1,381,721 - Pf1N1B4_1218 0.19 -0.1 1,381,753 + Pf1N1B4_1218 0.22 -0.9 1,381,753 + Pf1N1B4_1218 0.22 -2.7 1,381,753 + Pf1N1B4_1218 0.22 -0.8 1,381,753 + Pf1N1B4_1218 0.22 -0.5 1,381,754 - Pf1N1B4_1218 0.22 +0.7 1,381,754 - Pf1N1B4_1218 0.22 +0.8 1,381,754 - Pf1N1B4_1218 0.22 -3.1 1,381,819 + Pf1N1B4_1218 0.28 -0.0 1,381,819 + Pf1N1B4_1218 0.28 +0.1 1,381,819 + Pf1N1B4_1218 0.28 +1.1 1,381,819 + Pf1N1B4_1218 0.28 +0.1 1,381,819 + Pf1N1B4_1218 0.28 +1.1 1,381,819 + Pf1N1B4_1218 0.28 +0.1 1,381,819 + Pf1N1B4_1218 0.28 +0.5 1,381,819 + Pf1N1B4_1218 0.28 -1.6 1,381,819 + Pf1N1B4_1218 0.28 -1.2 1,381,819 + Pf1N1B4_1218 0.28 -1.3 1,381,819 + Pf1N1B4_1218 0.28 -1.9 1,381,819 + Pf1N1B4_1218 0.28 -1.4 1,381,819 + Pf1N1B4_1218 0.28 +1.2 1,381,819 + Pf1N1B4_1218 0.28 -1.9 1,381,819 + Pf1N1B4_1218 0.28 +2.6 1,381,820 - Pf1N1B4_1218 0.28 -2.1 1,381,820 - Pf1N1B4_1218 0.28 -0.7 1,381,820 - Pf1N1B4_1218 0.28 -0.8 1,381,820 - Pf1N1B4_1218 0.28 -2.1 1,381,820 - Pf1N1B4_1218 0.28 -3.7 1,381,820 - Pf1N1B4_1218 0.28 -1.6 1,381,820 - Pf1N1B4_1218 0.28 -2.5 1,381,820 - Pf1N1B4_1218 0.28 -1.3 1,381,820 - Pf1N1B4_1218 0.28 +0.6 1,381,820 - Pf1N1B4_1218 0.28 +0.5 1,381,820 - Pf1N1B4_1218 0.28 +0.1 1,381,820 - Pf1N1B4_1218 0.28 -0.1 1,381,820 - Pf1N1B4_1218 0.28 -2.0 1,381,820 - Pf1N1B4_1218 0.28 -0.6 1,381,820 - Pf1N1B4_1218 0.28 -1.8 1,381,820 - Pf1N1B4_1218 0.28 -1.1 1,381,820 - Pf1N1B4_1218 0.28 -1.7 1,381,820 - Pf1N1B4_1218 0.28 -2.7 1,381,820 - Pf1N1B4_1218 0.28 -0.7 1,381,820 - Pf1N1B4_1218 0.28 -0.4 1,381,977 + Pf1N1B4_1218 0.42 +1.2 1,381,978 - Pf1N1B4_1218 0.42 -2.4 1,381,978 - Pf1N1B4_1218 0.42 -1.9 1,382,007 - Pf1N1B4_1218 0.45 +2.5 1,382,069 - Pf1N1B4_1218 0.50 +1.5 1,382,069 - Pf1N1B4_1218 0.50 -3.3 1,382,069 - Pf1N1B4_1218 0.50 -1.3 1,382,123 + Pf1N1B4_1218 0.55 +1.6 1,382,124 - Pf1N1B4_1218 0.55 -1.1 1,382,179 + Pf1N1B4_1218 0.60 +0.6 1,382,179 + Pf1N1B4_1218 0.60 -2.1 1,382,180 - Pf1N1B4_1218 0.60 -0.0 1,382,180 - +0.2 1,382,450 - Pf1N1B4_1218 0.85 -3.3 1,382,450 - Pf1N1B4_1218 0.85 -2.2 1,382,452 + Pf1N1B4_1218 0.85 -1.8 1,382,453 - Pf1N1B4_1218 0.85 -3.1 1,382,453 - Pf1N1B4_1218 0.85 -2.5 1,382,453 - Pf1N1B4_1218 0.85 -2.6 1,382,453 - Pf1N1B4_1218 0.85 -2.1 1,382,453 - Pf1N1B4_1218 0.85 +0.9 1,382,453 - Pf1N1B4_1218 0.85 -0.2 1,382,453 - Pf1N1B4_1218 0.85 -1.9 1,382,453 - Pf1N1B4_1218 0.85 +1.3 1,382,453 - Pf1N1B4_1218 0.85 -1.1 1,382,453 - Pf1N1B4_1218 0.85 -1.5 1,382,453 - Pf1N1B4_1218 0.85 +0.4 1,382,453 - Pf1N1B4_1218 0.85 -1.4 1,382,453 - Pf1N1B4_1218 0.85 +0.3 1,382,458 + Pf1N1B4_1218 0.85 -0.8 1,382,459 - Pf1N1B4_1218 0.86 -1.2 1,382,459 - Pf1N1B4_1218 0.86 -2.3 1,382,604 - +0.1 1,382,700 - -2.1 1,382,736 + -0.2 1,382,737 - +0.6 1,382,823 + -1.9 1,382,823 + -0.4 1,382,823 + -1.6 1,382,824 - +0.0 1,382,883 - Pf1N1B4_1219 0.12 -1.6 1,382,883 - Pf1N1B4_1219 0.12 -1.1 1,382,883 - Pf1N1B4_1219 0.12 +2.1 1,382,883 - Pf1N1B4_1219 0.12 -1.4 1,383,200 + Pf1N1B4_1219 0.39 +0.1 1,383,203 + Pf1N1B4_1219 0.39 -0.9 1,383,216 - Pf1N1B4_1219 0.40 -0.1 1,383,229 - Pf1N1B4_1219 0.41 -1.7 1,383,440 - Pf1N1B4_1219 0.60 -0.7 1,383,456 - Pf1N1B4_1219 0.61 +1.9 1,383,456 - Pf1N1B4_1219 0.61 -1.4 1,383,497 + Pf1N1B4_1219 0.65 +2.5 1,383,569 + Pf1N1B4_1219 0.71 -0.5 1,383,569 + Pf1N1B4_1219 0.71 -0.8 1,383,570 - Pf1N1B4_1219 0.71 -1.4 1,383,570 - Pf1N1B4_1219 0.71 -0.4 1,383,570 - Pf1N1B4_1219 0.71 -2.3 1,383,570 - Pf1N1B4_1219 0.71 +0.2 1,383,570 - Pf1N1B4_1219 0.71 +1.9 1,383,570 - Pf1N1B4_1219 0.71 +1.6 1,383,570 - Pf1N1B4_1219 0.71 -0.4 1,383,570 - Pf1N1B4_1219 0.71 -3.2 1,383,570 - Pf1N1B4_1219 0.71 -1.2 1,383,570 - Pf1N1B4_1219 0.71 +2.6 1,383,570 - Pf1N1B4_1219 0.71 -0.2 1,383,570 - Pf1N1B4_1219 0.71 +0.2 1,383,599 + Pf1N1B4_1219 0.73 +1.5 1,383,600 - Pf1N1B4_1219 0.73 -2.5
Or see this region's nucleotide sequence