Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1218

Experiment: carbon source Sucrose 0.25mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1217 and Pf1N1B4_1218 overlap by 4 nucleotidesPf1N1B4_1218 and Pf1N1B4_1219 are separated by 130 nucleotides Pf1N1B4_1217 - RND multidrug efflux transporter; Acriflavin resistance protein, at 1,378,441 to 1,381,518 _1217 Pf1N1B4_1218 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 1,381,515 to 1,382,618 _1218 Pf1N1B4_1219 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2), at 1,382,749 to 1,383,906 _1219 Position (kb) 1381 1382 1383Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1380.515 kb on + strand, within Pf1N1B4_1217at 1380.516 kb on - strand, within Pf1N1B4_1217at 1380.516 kb on - strand, within Pf1N1B4_1217at 1380.571 kb on + strand, within Pf1N1B4_1217at 1380.571 kb on + strandat 1380.572 kb on - strand, within Pf1N1B4_1217at 1380.851 kb on + strand, within Pf1N1B4_1217at 1380.851 kb on + strand, within Pf1N1B4_1217at 1380.851 kb on + strand, within Pf1N1B4_1217at 1380.851 kb on + strand, within Pf1N1B4_1217at 1380.851 kb on + strand, within Pf1N1B4_1217at 1380.851 kb on + strand, within Pf1N1B4_1217at 1380.851 kb on + strand, within Pf1N1B4_1217at 1380.851 kb on + strand, within Pf1N1B4_1217at 1380.851 kb on + strand, within Pf1N1B4_1217at 1380.851 kb on + strand, within Pf1N1B4_1217at 1380.851 kb on + strand, within Pf1N1B4_1217at 1380.851 kb on + strand, within Pf1N1B4_1217at 1380.851 kb on + strand, within Pf1N1B4_1217at 1380.851 kb on + strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strandat 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strandat 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1380.852 kb on - strand, within Pf1N1B4_1217at 1381.053 kb on - strand, within Pf1N1B4_1217at 1381.053 kb on - strand, within Pf1N1B4_1217at 1381.053 kb on - strand, within Pf1N1B4_1217at 1381.100 kb on + strand, within Pf1N1B4_1217at 1381.101 kb on - strand, within Pf1N1B4_1217at 1381.113 kb on + strand, within Pf1N1B4_1217at 1381.114 kb on - strand, within Pf1N1B4_1217at 1381.114 kb on - strand, within Pf1N1B4_1217at 1381.148 kb on + strand, within Pf1N1B4_1217at 1381.148 kb on + strand, within Pf1N1B4_1217at 1381.149 kb on - strand, within Pf1N1B4_1217at 1381.149 kb on - strand, within Pf1N1B4_1217at 1381.149 kb on - strand, within Pf1N1B4_1217at 1381.283 kb on + strandat 1381.283 kb on + strandat 1381.283 kb on + strandat 1381.720 kb on + strand, within Pf1N1B4_1218at 1381.721 kb on - strand, within Pf1N1B4_1218at 1381.721 kb on - strand, within Pf1N1B4_1218at 1381.721 kb on - strand, within Pf1N1B4_1218at 1381.753 kb on + strand, within Pf1N1B4_1218at 1381.753 kb on + strand, within Pf1N1B4_1218at 1381.753 kb on + strand, within Pf1N1B4_1218at 1381.753 kb on + strand, within Pf1N1B4_1218at 1381.754 kb on - strand, within Pf1N1B4_1218at 1381.754 kb on - strand, within Pf1N1B4_1218at 1381.754 kb on - strand, within Pf1N1B4_1218at 1381.819 kb on + strand, within Pf1N1B4_1218at 1381.819 kb on + strand, within Pf1N1B4_1218at 1381.819 kb on + strand, within Pf1N1B4_1218at 1381.819 kb on + strand, within Pf1N1B4_1218at 1381.819 kb on + strand, within Pf1N1B4_1218at 1381.819 kb on + strand, within Pf1N1B4_1218at 1381.819 kb on + strand, within Pf1N1B4_1218at 1381.819 kb on + strand, within Pf1N1B4_1218at 1381.819 kb on + strand, within Pf1N1B4_1218at 1381.819 kb on + strand, within Pf1N1B4_1218at 1381.819 kb on + strand, within Pf1N1B4_1218at 1381.819 kb on + strand, within Pf1N1B4_1218at 1381.819 kb on + strand, within Pf1N1B4_1218at 1381.819 kb on + strand, within Pf1N1B4_1218at 1381.819 kb on + strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.820 kb on - strand, within Pf1N1B4_1218at 1381.977 kb on + strand, within Pf1N1B4_1218at 1381.978 kb on - strand, within Pf1N1B4_1218at 1381.978 kb on - strand, within Pf1N1B4_1218at 1382.007 kb on - strand, within Pf1N1B4_1218at 1382.069 kb on - strand, within Pf1N1B4_1218at 1382.069 kb on - strand, within Pf1N1B4_1218at 1382.069 kb on - strand, within Pf1N1B4_1218at 1382.123 kb on + strand, within Pf1N1B4_1218at 1382.124 kb on - strand, within Pf1N1B4_1218at 1382.179 kb on + strand, within Pf1N1B4_1218at 1382.179 kb on + strand, within Pf1N1B4_1218at 1382.180 kb on - strand, within Pf1N1B4_1218at 1382.180 kb on - strandat 1382.450 kb on - strand, within Pf1N1B4_1218at 1382.450 kb on - strand, within Pf1N1B4_1218at 1382.452 kb on + strand, within Pf1N1B4_1218at 1382.453 kb on - strand, within Pf1N1B4_1218at 1382.453 kb on - strand, within Pf1N1B4_1218at 1382.453 kb on - strand, within Pf1N1B4_1218at 1382.453 kb on - strand, within Pf1N1B4_1218at 1382.453 kb on - strand, within Pf1N1B4_1218at 1382.453 kb on - strand, within Pf1N1B4_1218at 1382.453 kb on - strand, within Pf1N1B4_1218at 1382.453 kb on - strand, within Pf1N1B4_1218at 1382.453 kb on - strand, within Pf1N1B4_1218at 1382.453 kb on - strand, within Pf1N1B4_1218at 1382.453 kb on - strand, within Pf1N1B4_1218at 1382.453 kb on - strand, within Pf1N1B4_1218at 1382.453 kb on - strand, within Pf1N1B4_1218at 1382.458 kb on + strand, within Pf1N1B4_1218at 1382.459 kb on - strand, within Pf1N1B4_1218at 1382.459 kb on - strand, within Pf1N1B4_1218at 1382.604 kb on - strandat 1382.700 kb on - strandat 1382.736 kb on + strandat 1382.737 kb on - strandat 1382.823 kb on + strandat 1382.823 kb on + strandat 1382.823 kb on + strandat 1382.824 kb on - strandat 1382.883 kb on - strand, within Pf1N1B4_1219at 1382.883 kb on - strand, within Pf1N1B4_1219at 1382.883 kb on - strand, within Pf1N1B4_1219at 1382.883 kb on - strand, within Pf1N1B4_1219at 1383.200 kb on + strand, within Pf1N1B4_1219at 1383.203 kb on + strand, within Pf1N1B4_1219at 1383.216 kb on - strand, within Pf1N1B4_1219at 1383.229 kb on - strand, within Pf1N1B4_1219at 1383.440 kb on - strand, within Pf1N1B4_1219at 1383.456 kb on - strand, within Pf1N1B4_1219at 1383.456 kb on - strand, within Pf1N1B4_1219at 1383.497 kb on + strand, within Pf1N1B4_1219at 1383.569 kb on + strand, within Pf1N1B4_1219at 1383.569 kb on + strand, within Pf1N1B4_1219at 1383.570 kb on - strand, within Pf1N1B4_1219at 1383.570 kb on - strand, within Pf1N1B4_1219at 1383.570 kb on - strand, within Pf1N1B4_1219at 1383.570 kb on - strand, within Pf1N1B4_1219at 1383.570 kb on - strand, within Pf1N1B4_1219at 1383.570 kb on - strand, within Pf1N1B4_1219at 1383.570 kb on - strand, within Pf1N1B4_1219at 1383.570 kb on - strand, within Pf1N1B4_1219at 1383.570 kb on - strand, within Pf1N1B4_1219at 1383.570 kb on - strand, within Pf1N1B4_1219at 1383.570 kb on - strand, within Pf1N1B4_1219at 1383.570 kb on - strand, within Pf1N1B4_1219at 1383.599 kb on + strand, within Pf1N1B4_1219at 1383.600 kb on - strand, within Pf1N1B4_1219

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 0.25mM
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1,380,515 + Pf1N1B4_1217 0.67 -1.1
1,380,516 - Pf1N1B4_1217 0.67 +0.6
1,380,516 - Pf1N1B4_1217 0.67 -1.2
1,380,571 + Pf1N1B4_1217 0.69 -1.5
1,380,571 + -0.7
1,380,572 - Pf1N1B4_1217 0.69 -2.9
1,380,851 + Pf1N1B4_1217 0.78 -3.2
1,380,851 + Pf1N1B4_1217 0.78 -1.5
1,380,851 + Pf1N1B4_1217 0.78 -0.9
1,380,851 + Pf1N1B4_1217 0.78 -3.0
1,380,851 + Pf1N1B4_1217 0.78 -1.4
1,380,851 + Pf1N1B4_1217 0.78 -1.9
1,380,851 + Pf1N1B4_1217 0.78 -1.6
1,380,851 + Pf1N1B4_1217 0.78 +0.1
1,380,851 + Pf1N1B4_1217 0.78 -0.4
1,380,851 + Pf1N1B4_1217 0.78 +0.6
1,380,851 + Pf1N1B4_1217 0.78 -1.5
1,380,851 + Pf1N1B4_1217 0.78 -2.9
1,380,851 + Pf1N1B4_1217 0.78 +1.6
1,380,851 + Pf1N1B4_1217 0.78 -3.1
1,380,852 - Pf1N1B4_1217 0.78 -1.8
1,380,852 - Pf1N1B4_1217 0.78 -1.3
1,380,852 - Pf1N1B4_1217 0.78 -1.7
1,380,852 - Pf1N1B4_1217 0.78 -0.7
1,380,852 - Pf1N1B4_1217 0.78 -1.4
1,380,852 - Pf1N1B4_1217 0.78 -1.2
1,380,852 - Pf1N1B4_1217 0.78 +0.4
1,380,852 - -0.9
1,380,852 - Pf1N1B4_1217 0.78 -0.9
1,380,852 - Pf1N1B4_1217 0.78 -1.2
1,380,852 - Pf1N1B4_1217 0.78 -0.6
1,380,852 - Pf1N1B4_1217 0.78 -1.1
1,380,852 - Pf1N1B4_1217 0.78 -2.8
1,380,852 - Pf1N1B4_1217 0.78 -0.6
1,380,852 - Pf1N1B4_1217 0.78 -3.1
1,380,852 - Pf1N1B4_1217 0.78 +0.0
1,380,852 - Pf1N1B4_1217 0.78 -1.3
1,380,852 - Pf1N1B4_1217 0.78 -1.3
1,380,852 - Pf1N1B4_1217 0.78 -1.6
1,380,852 - +1.1
1,380,852 - Pf1N1B4_1217 0.78 -0.7
1,380,852 - Pf1N1B4_1217 0.78 -2.4
1,380,852 - Pf1N1B4_1217 0.78 +1.0
1,380,852 - Pf1N1B4_1217 0.78 -0.3
1,380,852 - Pf1N1B4_1217 0.78 -0.2
1,381,053 - Pf1N1B4_1217 0.85 -1.4
1,381,053 - Pf1N1B4_1217 0.85 +1.1
1,381,053 - Pf1N1B4_1217 0.85 -2.0
1,381,100 + Pf1N1B4_1217 0.86 +1.6
1,381,101 - Pf1N1B4_1217 0.86 -0.9
1,381,113 + Pf1N1B4_1217 0.87 -2.1
1,381,114 - Pf1N1B4_1217 0.87 +2.0
1,381,114 - Pf1N1B4_1217 0.87 -1.7
1,381,148 + Pf1N1B4_1217 0.88 -1.4
1,381,148 + Pf1N1B4_1217 0.88 -0.5
1,381,149 - Pf1N1B4_1217 0.88 -2.1
1,381,149 - Pf1N1B4_1217 0.88 -0.6
1,381,149 - Pf1N1B4_1217 0.88 -2.2
1,381,283 + -0.4
1,381,283 + -1.6
1,381,283 + -0.2
1,381,720 + Pf1N1B4_1218 0.19 -1.5
1,381,721 - Pf1N1B4_1218 0.19 -1.4
1,381,721 - Pf1N1B4_1218 0.19 -1.7
1,381,721 - Pf1N1B4_1218 0.19 -0.1
1,381,753 + Pf1N1B4_1218 0.22 -0.9
1,381,753 + Pf1N1B4_1218 0.22 -2.7
1,381,753 + Pf1N1B4_1218 0.22 -0.8
1,381,753 + Pf1N1B4_1218 0.22 -0.5
1,381,754 - Pf1N1B4_1218 0.22 +0.7
1,381,754 - Pf1N1B4_1218 0.22 +0.8
1,381,754 - Pf1N1B4_1218 0.22 -3.1
1,381,819 + Pf1N1B4_1218 0.28 -0.0
1,381,819 + Pf1N1B4_1218 0.28 +0.1
1,381,819 + Pf1N1B4_1218 0.28 +1.1
1,381,819 + Pf1N1B4_1218 0.28 +0.1
1,381,819 + Pf1N1B4_1218 0.28 +1.1
1,381,819 + Pf1N1B4_1218 0.28 +0.1
1,381,819 + Pf1N1B4_1218 0.28 +0.5
1,381,819 + Pf1N1B4_1218 0.28 -1.6
1,381,819 + Pf1N1B4_1218 0.28 -1.2
1,381,819 + Pf1N1B4_1218 0.28 -1.3
1,381,819 + Pf1N1B4_1218 0.28 -1.9
1,381,819 + Pf1N1B4_1218 0.28 -1.4
1,381,819 + Pf1N1B4_1218 0.28 +1.2
1,381,819 + Pf1N1B4_1218 0.28 -1.9
1,381,819 + Pf1N1B4_1218 0.28 +2.6
1,381,820 - Pf1N1B4_1218 0.28 -2.1
1,381,820 - Pf1N1B4_1218 0.28 -0.7
1,381,820 - Pf1N1B4_1218 0.28 -0.8
1,381,820 - Pf1N1B4_1218 0.28 -2.1
1,381,820 - Pf1N1B4_1218 0.28 -3.7
1,381,820 - Pf1N1B4_1218 0.28 -1.6
1,381,820 - Pf1N1B4_1218 0.28 -2.5
1,381,820 - Pf1N1B4_1218 0.28 -1.3
1,381,820 - Pf1N1B4_1218 0.28 +0.6
1,381,820 - Pf1N1B4_1218 0.28 +0.5
1,381,820 - Pf1N1B4_1218 0.28 +0.1
1,381,820 - Pf1N1B4_1218 0.28 -0.1
1,381,820 - Pf1N1B4_1218 0.28 -2.0
1,381,820 - Pf1N1B4_1218 0.28 -0.6
1,381,820 - Pf1N1B4_1218 0.28 -1.8
1,381,820 - Pf1N1B4_1218 0.28 -1.1
1,381,820 - Pf1N1B4_1218 0.28 -1.7
1,381,820 - Pf1N1B4_1218 0.28 -2.7
1,381,820 - Pf1N1B4_1218 0.28 -0.7
1,381,820 - Pf1N1B4_1218 0.28 -0.4
1,381,977 + Pf1N1B4_1218 0.42 +1.2
1,381,978 - Pf1N1B4_1218 0.42 -2.4
1,381,978 - Pf1N1B4_1218 0.42 -1.9
1,382,007 - Pf1N1B4_1218 0.45 +2.5
1,382,069 - Pf1N1B4_1218 0.50 +1.5
1,382,069 - Pf1N1B4_1218 0.50 -3.3
1,382,069 - Pf1N1B4_1218 0.50 -1.3
1,382,123 + Pf1N1B4_1218 0.55 +1.6
1,382,124 - Pf1N1B4_1218 0.55 -1.1
1,382,179 + Pf1N1B4_1218 0.60 +0.6
1,382,179 + Pf1N1B4_1218 0.60 -2.1
1,382,180 - Pf1N1B4_1218 0.60 -0.0
1,382,180 - +0.2
1,382,450 - Pf1N1B4_1218 0.85 -3.3
1,382,450 - Pf1N1B4_1218 0.85 -2.2
1,382,452 + Pf1N1B4_1218 0.85 -1.8
1,382,453 - Pf1N1B4_1218 0.85 -3.1
1,382,453 - Pf1N1B4_1218 0.85 -2.5
1,382,453 - Pf1N1B4_1218 0.85 -2.6
1,382,453 - Pf1N1B4_1218 0.85 -2.1
1,382,453 - Pf1N1B4_1218 0.85 +0.9
1,382,453 - Pf1N1B4_1218 0.85 -0.2
1,382,453 - Pf1N1B4_1218 0.85 -1.9
1,382,453 - Pf1N1B4_1218 0.85 +1.3
1,382,453 - Pf1N1B4_1218 0.85 -1.1
1,382,453 - Pf1N1B4_1218 0.85 -1.5
1,382,453 - Pf1N1B4_1218 0.85 +0.4
1,382,453 - Pf1N1B4_1218 0.85 -1.4
1,382,453 - Pf1N1B4_1218 0.85 +0.3
1,382,458 + Pf1N1B4_1218 0.85 -0.8
1,382,459 - Pf1N1B4_1218 0.86 -1.2
1,382,459 - Pf1N1B4_1218 0.86 -2.3
1,382,604 - +0.1
1,382,700 - -2.1
1,382,736 + -0.2
1,382,737 - +0.6
1,382,823 + -1.9
1,382,823 + -0.4
1,382,823 + -1.6
1,382,824 - +0.0
1,382,883 - Pf1N1B4_1219 0.12 -1.6
1,382,883 - Pf1N1B4_1219 0.12 -1.1
1,382,883 - Pf1N1B4_1219 0.12 +2.1
1,382,883 - Pf1N1B4_1219 0.12 -1.4
1,383,200 + Pf1N1B4_1219 0.39 +0.1
1,383,203 + Pf1N1B4_1219 0.39 -0.9
1,383,216 - Pf1N1B4_1219 0.40 -0.1
1,383,229 - Pf1N1B4_1219 0.41 -1.7
1,383,440 - Pf1N1B4_1219 0.60 -0.7
1,383,456 - Pf1N1B4_1219 0.61 +1.9
1,383,456 - Pf1N1B4_1219 0.61 -1.4
1,383,497 + Pf1N1B4_1219 0.65 +2.5
1,383,569 + Pf1N1B4_1219 0.71 -0.5
1,383,569 + Pf1N1B4_1219 0.71 -0.8
1,383,570 - Pf1N1B4_1219 0.71 -1.4
1,383,570 - Pf1N1B4_1219 0.71 -0.4
1,383,570 - Pf1N1B4_1219 0.71 -2.3
1,383,570 - Pf1N1B4_1219 0.71 +0.2
1,383,570 - Pf1N1B4_1219 0.71 +1.9
1,383,570 - Pf1N1B4_1219 0.71 +1.6
1,383,570 - Pf1N1B4_1219 0.71 -0.4
1,383,570 - Pf1N1B4_1219 0.71 -3.2
1,383,570 - Pf1N1B4_1219 0.71 -1.2
1,383,570 - Pf1N1B4_1219 0.71 +2.6
1,383,570 - Pf1N1B4_1219 0.71 -0.2
1,383,570 - Pf1N1B4_1219 0.71 +0.2
1,383,599 + Pf1N1B4_1219 0.73 +1.5
1,383,600 - Pf1N1B4_1219 0.73 -2.5

Or see this region's nucleotide sequence