Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0866

Experiment: KB with Dihydrodehydroerosone 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0865 and Psyr_0866 are separated by 65 nucleotidesPsyr_0866 and Psyr_0867 are separated by 86 nucleotides Psyr_0865: Psyr_0865 - General substrate transporter:Major facilitator superfamily, at 984,855 to 986,063 _0865 Psyr_0866: Psyr_0866 - CDP-diacylglycerol-choline O-phosphatidyltransferase, at 986,129 to 986,848 _0866 Psyr_0867: Psyr_0867 - conserved hypothetical protein, at 986,935 to 988,947 _0867 Position (kb) 986 987Strain fitness (log2 ratio) -2 -1 0 1 2at 985.292 kb on + strand, within Psyr_0865at 985.310 kb on - strand, within Psyr_0865at 985.310 kb on - strand, within Psyr_0865at 985.396 kb on + strand, within Psyr_0865at 985.396 kb on + strand, within Psyr_0865at 985.397 kb on - strand, within Psyr_0865at 985.500 kb on + strand, within Psyr_0865at 985.500 kb on + strand, within Psyr_0865at 985.501 kb on - strand, within Psyr_0865at 985.501 kb on - strand, within Psyr_0865at 985.501 kb on - strand, within Psyr_0865at 985.542 kb on + strand, within Psyr_0865at 985.543 kb on - strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.548 kb on + strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.549 kb on - strand, within Psyr_0865at 985.775 kb on + strand, within Psyr_0865at 985.776 kb on - strand, within Psyr_0865at 986.001 kb on + strandat 986.061 kb on + strandat 986.061 kb on + strandat 986.062 kb on - strandat 986.138 kb on - strandat 986.174 kb on - strandat 986.174 kb on - strandat 986.190 kb on + strandat 986.190 kb on + strandat 986.276 kb on + strand, within Psyr_0866at 986.276 kb on + strand, within Psyr_0866at 986.276 kb on + strand, within Psyr_0866at 986.277 kb on - strand, within Psyr_0866at 986.277 kb on - strand, within Psyr_0866at 986.412 kb on + strand, within Psyr_0866at 986.412 kb on + strand, within Psyr_0866at 986.412 kb on + strand, within Psyr_0866at 986.412 kb on + strand, within Psyr_0866at 986.413 kb on - strand, within Psyr_0866at 986.413 kb on - strand, within Psyr_0866at 986.413 kb on - strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.460 kb on + strand, within Psyr_0866at 986.461 kb on - strand, within Psyr_0866at 986.461 kb on - strand, within Psyr_0866at 986.461 kb on - strand, within Psyr_0866at 986.461 kb on - strand, within Psyr_0866at 986.558 kb on + strand, within Psyr_0866at 986.559 kb on - strand, within Psyr_0866at 986.559 kb on - strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.560 kb on + strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.561 kb on - strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.562 kb on + strand, within Psyr_0866at 986.563 kb on - strand, within Psyr_0866at 986.563 kb on - strand, within Psyr_0866at 986.568 kb on + strand, within Psyr_0866at 986.568 kb on + strand, within Psyr_0866at 986.568 kb on + strand, within Psyr_0866at 986.568 kb on + strand, within Psyr_0866at 986.569 kb on - strand, within Psyr_0866at 986.595 kb on + strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.596 kb on - strand, within Psyr_0866at 986.781 kb on - strandat 986.868 kb on + strandat 986.868 kb on + strandat 986.868 kb on + strandat 986.869 kb on - strandat 986.869 kb on - strandat 986.869 kb on - strandat 986.869 kb on - strandat 986.909 kb on + strandat 986.931 kb on - strandat 987.008 kb on + strandat 987.008 kb on + strandat 987.008 kb on + strandat 987.008 kb on + strandat 987.009 kb on - strandat 987.009 kb on - strandat 987.033 kb on + strandat 987.097 kb on + strandat 987.098 kb on - strandat 987.125 kb on - strandat 987.198 kb on + strand, within Psyr_0867at 987.198 kb on + strand, within Psyr_0867at 987.199 kb on - strand, within Psyr_0867at 987.218 kb on + strand, within Psyr_0867at 987.218 kb on + strand, within Psyr_0867at 987.218 kb on + strand, within Psyr_0867at 987.218 kb on + strand, within Psyr_0867at 987.218 kb on + strand, within Psyr_0867at 987.219 kb on - strand, within Psyr_0867at 987.219 kb on - strand, within Psyr_0867at 987.219 kb on - strand, within Psyr_0867at 987.219 kb on - strand, within Psyr_0867at 987.219 kb on - strand, within Psyr_0867at 987.219 kb on - strand, within Psyr_0867at 987.219 kb on - strand, within Psyr_0867at 987.219 kb on - strand, within Psyr_0867at 987.220 kb on + strand, within Psyr_0867at 987.303 kb on + strand, within Psyr_0867at 987.303 kb on + strand, within Psyr_0867at 987.303 kb on + strand, within Psyr_0867at 987.303 kb on + strand, within Psyr_0867at 987.304 kb on - strand, within Psyr_0867at 987.304 kb on - strand, within Psyr_0867at 987.304 kb on - strand, within Psyr_0867at 987.353 kb on + strand, within Psyr_0867at 987.353 kb on + strand, within Psyr_0867at 987.354 kb on - strand, within Psyr_0867at 987.380 kb on + strand, within Psyr_0867at 987.380 kb on + strand, within Psyr_0867at 987.381 kb on - strand, within Psyr_0867at 987.381 kb on - strand, within Psyr_0867at 987.381 kb on - strand, within Psyr_0867at 987.381 kb on - strand, within Psyr_0867at 987.381 kb on - strand, within Psyr_0867at 987.381 kb on - strand, within Psyr_0867at 987.381 kb on - strand, within Psyr_0867at 987.381 kb on - strand, within Psyr_0867at 987.701 kb on + strand, within Psyr_0867at 987.701 kb on + strand, within Psyr_0867at 987.701 kb on + strand, within Psyr_0867at 987.702 kb on - strand, within Psyr_0867at 987.702 kb on - strand, within Psyr_0867at 987.702 kb on - strand, within Psyr_0867

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dihydrodehydroerosone 10 mM
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985,292 + Psyr_0865 0.36 -0.6
985,310 - Psyr_0865 0.38 +0.4
985,310 - Psyr_0865 0.38 -0.5
985,396 + Psyr_0865 0.45 +0.1
985,396 + Psyr_0865 0.45 +0.2
985,397 - Psyr_0865 0.45 +0.1
985,500 + Psyr_0865 0.53 -0.5
985,500 + Psyr_0865 0.53 +0.6
985,501 - Psyr_0865 0.53 -0.3
985,501 - Psyr_0865 0.53 +0.2
985,501 - Psyr_0865 0.53 -0.4
985,542 + Psyr_0865 0.57 +0.6
985,543 - Psyr_0865 0.57 +1.0
985,548 + Psyr_0865 0.57 -0.6
985,548 + Psyr_0865 0.57 -0.8
985,548 + Psyr_0865 0.57 +0.4
985,548 + Psyr_0865 0.57 -0.4
985,548 + Psyr_0865 0.57 +1.1
985,548 + Psyr_0865 0.57 +1.1
985,548 + Psyr_0865 0.57 -0.0
985,548 + Psyr_0865 0.57 -0.9
985,548 + Psyr_0865 0.57 +0.1
985,548 + Psyr_0865 0.57 -0.1
985,548 + Psyr_0865 0.57 +0.2
985,548 + Psyr_0865 0.57 +1.3
985,548 + Psyr_0865 0.57 +0.1
985,548 + Psyr_0865 0.57 -0.3
985,548 + Psyr_0865 0.57 +0.3
985,549 - Psyr_0865 0.57 -1.1
985,549 - Psyr_0865 0.57 -0.6
985,549 - Psyr_0865 0.57 +0.2
985,549 - Psyr_0865 0.57 -0.6
985,549 - Psyr_0865 0.57 +0.2
985,549 - Psyr_0865 0.57 +0.1
985,549 - Psyr_0865 0.57 -2.3
985,549 - Psyr_0865 0.57 +1.9
985,549 - Psyr_0865 0.57 -0.2
985,549 - Psyr_0865 0.57 -0.3
985,775 + Psyr_0865 0.76 -0.0
985,776 - Psyr_0865 0.76 -0.6
986,001 + +0.4
986,061 + +1.1
986,061 + -1.0
986,062 - +1.5
986,138 - +0.9
986,174 - +0.0
986,174 - +0.1
986,190 + +1.2
986,190 + -0.7
986,276 + Psyr_0866 0.20 +0.9
986,276 + Psyr_0866 0.20 -0.0
986,276 + Psyr_0866 0.20 -0.8
986,277 - Psyr_0866 0.21 +0.6
986,277 - Psyr_0866 0.21 +0.6
986,412 + Psyr_0866 0.39 +0.4
986,412 + Psyr_0866 0.39 +0.7
986,412 + Psyr_0866 0.39 +0.2
986,412 + Psyr_0866 0.39 -0.4
986,413 - Psyr_0866 0.39 +0.5
986,413 - Psyr_0866 0.39 +0.1
986,413 - Psyr_0866 0.39 -0.6
986,460 + Psyr_0866 0.46 -0.9
986,460 + Psyr_0866 0.46 -0.1
986,460 + Psyr_0866 0.46 -1.2
986,460 + Psyr_0866 0.46 +0.0
986,460 + Psyr_0866 0.46 -0.6
986,460 + Psyr_0866 0.46 -0.0
986,460 + Psyr_0866 0.46 -0.2
986,461 - Psyr_0866 0.46 -0.4
986,461 - Psyr_0866 0.46 +0.6
986,461 - Psyr_0866 0.46 +1.2
986,461 - Psyr_0866 0.46 +0.6
986,558 + Psyr_0866 0.60 +0.2
986,559 - Psyr_0866 0.60 +0.9
986,559 - Psyr_0866 0.60 +0.1
986,560 + Psyr_0866 0.60 +2.2
986,560 + Psyr_0866 0.60 -2.5
986,560 + Psyr_0866 0.60 +0.8
986,560 + Psyr_0866 0.60 -0.3
986,560 + Psyr_0866 0.60 +0.1
986,560 + Psyr_0866 0.60 +0.3
986,560 + Psyr_0866 0.60 -0.0
986,560 + Psyr_0866 0.60 +0.7
986,560 + Psyr_0866 0.60 +0.1
986,561 - Psyr_0866 0.60 -0.5
986,561 - Psyr_0866 0.60 -0.9
986,561 - Psyr_0866 0.60 -2.6
986,561 - Psyr_0866 0.60 -0.4
986,561 - Psyr_0866 0.60 -0.7
986,561 - Psyr_0866 0.60 +1.5
986,562 + Psyr_0866 0.60 -0.9
986,562 + Psyr_0866 0.60 +0.4
986,562 + Psyr_0866 0.60 -1.0
986,562 + Psyr_0866 0.60 +0.3
986,562 + Psyr_0866 0.60 +0.1
986,562 + Psyr_0866 0.60 -0.1
986,563 - Psyr_0866 0.60 +1.0
986,563 - Psyr_0866 0.60 +2.0
986,568 + Psyr_0866 0.61 +0.1
986,568 + Psyr_0866 0.61 -0.1
986,568 + Psyr_0866 0.61 +0.8
986,568 + Psyr_0866 0.61 -0.7
986,569 - Psyr_0866 0.61 -1.6
986,595 + Psyr_0866 0.65 -1.0
986,596 - Psyr_0866 0.65 -0.2
986,596 - Psyr_0866 0.65 -0.1
986,596 - Psyr_0866 0.65 -0.5
986,596 - Psyr_0866 0.65 -0.3
986,596 - Psyr_0866 0.65 +0.3
986,596 - Psyr_0866 0.65 -2.5
986,781 - -1.5
986,868 + -0.5
986,868 + -0.4
986,868 + -0.2
986,869 - +0.4
986,869 - -0.4
986,869 - +1.7
986,869 - +0.3
986,909 + -0.3
986,931 - +0.2
987,008 + +1.3
987,008 + +0.4
987,008 + -1.4
987,008 + -1.3
987,009 - +0.9
987,009 - +0.1
987,033 + -0.6
987,097 + -0.8
987,098 - -0.2
987,125 - +2.2
987,198 + Psyr_0867 0.13 -0.3
987,198 + Psyr_0867 0.13 +0.7
987,199 - Psyr_0867 0.13 -0.2
987,218 + Psyr_0867 0.14 +0.2
987,218 + Psyr_0867 0.14 +2.2
987,218 + Psyr_0867 0.14 +0.2
987,218 + Psyr_0867 0.14 +0.5
987,218 + Psyr_0867 0.14 -0.9
987,219 - Psyr_0867 0.14 -0.7
987,219 - Psyr_0867 0.14 +0.2
987,219 - Psyr_0867 0.14 -0.2
987,219 - Psyr_0867 0.14 -1.8
987,219 - Psyr_0867 0.14 +0.9
987,219 - Psyr_0867 0.14 +0.5
987,219 - Psyr_0867 0.14 -1.6
987,219 - Psyr_0867 0.14 -0.2
987,220 + Psyr_0867 0.14 +0.6
987,303 + Psyr_0867 0.18 +0.2
987,303 + Psyr_0867 0.18 -0.7
987,303 + Psyr_0867 0.18 -0.2
987,303 + Psyr_0867 0.18 +0.9
987,304 - Psyr_0867 0.18 -0.3
987,304 - Psyr_0867 0.18 -0.7
987,304 - Psyr_0867 0.18 +0.6
987,353 + Psyr_0867 0.21 +0.6
987,353 + Psyr_0867 0.21 +0.0
987,354 - Psyr_0867 0.21 -0.4
987,380 + Psyr_0867 0.22 +0.6
987,380 + Psyr_0867 0.22 -0.9
987,381 - Psyr_0867 0.22 +0.5
987,381 - Psyr_0867 0.22 -0.1
987,381 - Psyr_0867 0.22 -0.4
987,381 - Psyr_0867 0.22 -0.1
987,381 - Psyr_0867 0.22 +0.6
987,381 - Psyr_0867 0.22 -1.4
987,381 - Psyr_0867 0.22 -0.3
987,381 - Psyr_0867 0.22 +0.0
987,701 + Psyr_0867 0.38 +0.6
987,701 + Psyr_0867 0.38 +0.6
987,701 + Psyr_0867 0.38 -1.1
987,702 - Psyr_0867 0.38 -0.2
987,702 - Psyr_0867 0.38 +0.1
987,702 - Psyr_0867 0.38 -0.6

Or see this region's nucleotide sequence