Experiment: KB with Dihydrodehydroerosone 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0862 and Psyr_0863 are separated by 227 nucleotides Psyr_0863 and Psyr_0864 are separated by 108 nucleotides Psyr_0864 and Psyr_0865 are separated by 267 nucleotides
Psyr_0862: Psyr_0862 - Acyltransferase 3, at 981,424 to 983,445
_0862
Psyr_0863: Psyr_0863 - PhnA protein, at 983,673 to 984,047
_0863
Psyr_0864: Psyr_0864 - Protein of unknown function DUF393, at 984,156 to 984,587
_0864
Psyr_0865: Psyr_0865 - General substrate transporter:Major facilitator superfamily, at 984,855 to 986,063
_0865
Position (kb) 984
985 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 983.228 kb on + strand, within Psyr_0862 at 983.257 kb on + strand at 983.257 kb on + strand at 983.257 kb on + strand at 983.257 kb on + strand at 983.257 kb on + strand at 983.257 kb on + strand at 983.258 kb on - strand at 983.258 kb on - strand at 983.258 kb on - strand at 983.258 kb on - strand at 983.463 kb on + strand at 983.463 kb on + strand at 983.463 kb on + strand at 983.463 kb on + strand at 983.463 kb on + strand at 983.464 kb on - strand at 983.464 kb on - strand at 983.464 kb on - strand at 983.464 kb on - strand at 983.480 kb on + strand at 983.480 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.497 kb on - strand at 983.497 kb on - strand at 983.497 kb on - strand at 983.497 kb on - strand at 983.501 kb on - strand at 983.529 kb on + strand at 983.530 kb on - strand at 983.578 kb on - strand at 983.618 kb on + strand at 983.619 kb on - strand at 983.619 kb on - strand at 983.619 kb on - strand at 983.665 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.743 kb on - strand, within Psyr_0863 at 983.743 kb on - strand, within Psyr_0863 at 983.748 kb on + strand, within Psyr_0863 at 983.748 kb on + strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 984.353 kb on + strand, within Psyr_0864 at 984.354 kb on - strand, within Psyr_0864 at 984.354 kb on - strand, within Psyr_0864 at 984.489 kb on + strand, within Psyr_0864 at 984.490 kb on - strand, within Psyr_0864 at 984.531 kb on + strand, within Psyr_0864 at 984.531 kb on + strand, within Psyr_0864 at 984.605 kb on + strand at 984.605 kb on + strand at 984.606 kb on - strand at 984.652 kb on + strand at 984.692 kb on + strand at 984.693 kb on - strand at 984.781 kb on + strand at 984.781 kb on + strand at 984.782 kb on - strand at 984.782 kb on - strand at 984.860 kb on - strand at 984.887 kb on + strand at 984.888 kb on - strand at 984.888 kb on - strand at 984.968 kb on + strand at 984.968 kb on + strand at 984.968 kb on + strand at 984.969 kb on - strand at 985.026 kb on + strand, within Psyr_0865 at 985.026 kb on + strand, within Psyr_0865 at 985.026 kb on + strand, within Psyr_0865 at 985.026 kb on + strand, within Psyr_0865 at 985.026 kb on + strand, within Psyr_0865 at 985.026 kb on + strand, within Psyr_0865 at 985.026 kb on + strand, within Psyr_0865 at 985.026 kb on + strand, within Psyr_0865 at 985.026 kb on + strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.027 kb on - strand, within Psyr_0865 at 985.292 kb on + strand, within Psyr_0865 at 985.310 kb on - strand, within Psyr_0865 at 985.310 kb on - strand, within Psyr_0865 at 985.396 kb on + strand, within Psyr_0865 at 985.396 kb on + strand, within Psyr_0865 at 985.397 kb on - strand, within Psyr_0865 at 985.500 kb on + strand, within Psyr_0865 at 985.500 kb on + strand, within Psyr_0865 at 985.501 kb on - strand, within Psyr_0865 at 985.501 kb on - strand, within Psyr_0865 at 985.501 kb on - strand, within Psyr_0865 at 985.542 kb on + strand, within Psyr_0865 at 985.543 kb on - strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.548 kb on + strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865 at 985.549 kb on - strand, within Psyr_0865
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dihydrodehydroerosone 10 mM remove 983,228 + Psyr_0862 0.89 -0.7 983,257 + +0.1 983,257 + +1.3 983,257 + -0.8 983,257 + +0.5 983,257 + +0.3 983,257 + +0.4 983,258 - +0.9 983,258 - +0.7 983,258 - +0.1 983,258 - -0.4 983,463 + +1.2 983,463 + -0.3 983,463 + -0.7 983,463 + -0.2 983,463 + -0.0 983,464 - -0.6 983,464 - +0.3 983,464 - -1.3 983,464 - +0.9 983,480 + -2.4 983,480 + +0.5 983,496 + +1.1 983,496 + -0.2 983,496 + +0.2 983,496 + +1.2 983,496 + -0.8 983,496 + +1.2 983,496 + +0.1 983,496 + +0.8 983,496 + -0.6 983,496 + +0.3 983,496 + +0.7 983,497 - -0.4 983,497 - -0.7 983,497 - -0.3 983,497 - +0.1 983,501 - +1.5 983,529 + +0.6 983,530 - +1.2 983,578 - +0.1 983,618 + -0.5 983,619 - -2.4 983,619 - -0.4 983,619 - -0.3 983,665 + +0.5 983,667 + +0.7 983,667 + +0.0 983,667 + -0.1 983,667 + +1.2 983,667 + -0.8 983,667 + +0.3 983,667 + -0.4 983,667 + +0.6 983,667 + +1.2 983,667 + +0.7 983,667 + -0.5 983,668 - -1.8 983,668 - -1.1 983,668 - -2.5 983,668 - +0.1 983,668 - -1.4 983,668 - -1.2 983,668 - +0.1 983,743 - Psyr_0863 0.19 -1.5 983,743 - Psyr_0863 0.19 -1.1 983,748 + Psyr_0863 0.20 -0.2 983,748 + Psyr_0863 0.20 +0.2 983,749 - Psyr_0863 0.20 -0.5 983,749 - Psyr_0863 0.20 -1.3 983,749 - Psyr_0863 0.20 -0.6 983,749 - Psyr_0863 0.20 -2.4 983,749 - Psyr_0863 0.20 +0.3 983,749 - Psyr_0863 0.20 -0.1 983,749 - Psyr_0863 0.20 -1.0 983,749 - Psyr_0863 0.20 -1.3 983,749 - Psyr_0863 0.20 -0.9 984,353 + Psyr_0864 0.46 -1.0 984,354 - Psyr_0864 0.46 +0.5 984,354 - Psyr_0864 0.46 +0.1 984,489 + Psyr_0864 0.77 +0.7 984,490 - Psyr_0864 0.77 +1.9 984,531 + Psyr_0864 0.87 +0.7 984,531 + Psyr_0864 0.87 -2.8 984,605 + -0.1 984,605 + +0.1 984,606 - -0.1 984,652 + +2.1 984,692 + -0.0 984,693 - +1.3 984,781 + +0.7 984,781 + -0.4 984,782 - +0.2 984,782 - +0.6 984,860 - +1.6 984,887 + +0.4 984,888 - +0.2 984,888 - -2.9 984,968 + +0.6 984,968 + +0.9 984,968 + +0.1 984,969 - -0.3 985,026 + Psyr_0865 0.14 +0.3 985,026 + Psyr_0865 0.14 +0.5 985,026 + Psyr_0865 0.14 +1.4 985,026 + Psyr_0865 0.14 +0.2 985,026 + Psyr_0865 0.14 -0.2 985,026 + Psyr_0865 0.14 -0.4 985,026 + Psyr_0865 0.14 +0.1 985,026 + Psyr_0865 0.14 +0.4 985,026 + Psyr_0865 0.14 -0.2 985,027 - Psyr_0865 0.14 +1.0 985,027 - Psyr_0865 0.14 -0.2 985,027 - Psyr_0865 0.14 -0.1 985,027 - Psyr_0865 0.14 +0.2 985,027 - Psyr_0865 0.14 -0.2 985,027 - Psyr_0865 0.14 +0.0 985,027 - Psyr_0865 0.14 +1.0 985,027 - Psyr_0865 0.14 +1.4 985,027 - Psyr_0865 0.14 -0.3 985,027 - Psyr_0865 0.14 -0.2 985,027 - Psyr_0865 0.14 -2.0 985,027 - Psyr_0865 0.14 -1.3 985,027 - Psyr_0865 0.14 -0.8 985,027 - Psyr_0865 0.14 -0.1 985,027 - Psyr_0865 0.14 -2.0 985,027 - Psyr_0865 0.14 -0.5 985,027 - Psyr_0865 0.14 +0.5 985,292 + Psyr_0865 0.36 -0.6 985,310 - Psyr_0865 0.38 +0.4 985,310 - Psyr_0865 0.38 -0.5 985,396 + Psyr_0865 0.45 +0.1 985,396 + Psyr_0865 0.45 +0.2 985,397 - Psyr_0865 0.45 +0.1 985,500 + Psyr_0865 0.53 -0.5 985,500 + Psyr_0865 0.53 +0.6 985,501 - Psyr_0865 0.53 -0.3 985,501 - Psyr_0865 0.53 +0.2 985,501 - Psyr_0865 0.53 -0.4 985,542 + Psyr_0865 0.57 +0.6 985,543 - Psyr_0865 0.57 +1.0 985,548 + Psyr_0865 0.57 -0.6 985,548 + Psyr_0865 0.57 -0.8 985,548 + Psyr_0865 0.57 +0.4 985,548 + Psyr_0865 0.57 -0.4 985,548 + Psyr_0865 0.57 +1.1 985,548 + Psyr_0865 0.57 +1.1 985,548 + Psyr_0865 0.57 -0.0 985,548 + Psyr_0865 0.57 -0.9 985,548 + Psyr_0865 0.57 +0.1 985,548 + Psyr_0865 0.57 -0.1 985,548 + Psyr_0865 0.57 +0.2 985,548 + Psyr_0865 0.57 +1.3 985,548 + Psyr_0865 0.57 +0.1 985,548 + Psyr_0865 0.57 -0.3 985,548 + Psyr_0865 0.57 +0.3 985,549 - Psyr_0865 0.57 -1.1 985,549 - Psyr_0865 0.57 -0.6 985,549 - Psyr_0865 0.57 +0.2 985,549 - Psyr_0865 0.57 -0.6 985,549 - Psyr_0865 0.57 +0.2 985,549 - Psyr_0865 0.57 +0.1 985,549 - Psyr_0865 0.57 -2.3 985,549 - Psyr_0865 0.57 +1.9 985,549 - Psyr_0865 0.57 -0.2 985,549 - Psyr_0865 0.57 -0.3
Or see this region's nucleotide sequence