Experiment: KB with Quinine Hdrochloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4268 and Psyr_4269 are separated by 69 nucleotides Psyr_4269 and Psyr_4270 are separated by 344 nucleotides
Psyr_4268: Psyr_4268 - Amidase, at 5,089,512 to 5,090,963
_4268
Psyr_4269: Psyr_4269 - type III effector HopAE1, at 5,091,033 to 5,093,777
_4269
Psyr_4270: Psyr_4270 - serine hydroxymethyltransferase, at 5,094,122 to 5,095,375
_4270
Position (kb) 5091
5092
5093
5094 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5090.315 kb on - strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.392 kb on - strand, within Psyr_4268 at 5090.392 kb on - strand, within Psyr_4268 at 5090.392 kb on - strand, within Psyr_4268 at 5090.475 kb on + strand, within Psyr_4268 at 5090.583 kb on + strand, within Psyr_4268 at 5090.584 kb on - strand, within Psyr_4268 at 5090.584 kb on - strand, within Psyr_4268 at 5090.584 kb on - strand, within Psyr_4268 at 5090.646 kb on + strand, within Psyr_4268 at 5090.817 kb on + strand, within Psyr_4268 at 5091.034 kb on + strand at 5091.035 kb on - strand at 5091.035 kb on - strand at 5091.100 kb on + strand at 5091.101 kb on - strand at 5091.193 kb on + strand at 5091.194 kb on - strand at 5091.194 kb on - strand at 5091.259 kb on + strand at 5091.507 kb on + strand, within Psyr_4269 at 5091.619 kb on + strand, within Psyr_4269 at 5091.619 kb on + strand, within Psyr_4269 at 5091.619 kb on + strand, within Psyr_4269 at 5091.620 kb on - strand, within Psyr_4269 at 5091.727 kb on + strand, within Psyr_4269 at 5091.727 kb on + strand, within Psyr_4269 at 5091.727 kb on + strand, within Psyr_4269 at 5091.728 kb on - strand, within Psyr_4269 at 5091.775 kb on + strand, within Psyr_4269 at 5091.775 kb on + strand, within Psyr_4269 at 5091.776 kb on - strand, within Psyr_4269 at 5091.776 kb on - strand, within Psyr_4269 at 5091.943 kb on - strand, within Psyr_4269 at 5092.069 kb on + strand, within Psyr_4269 at 5092.181 kb on - strand, within Psyr_4269 at 5092.182 kb on - strand, within Psyr_4269 at 5092.523 kb on + strand, within Psyr_4269 at 5092.670 kb on + strand, within Psyr_4269 at 5092.671 kb on - strand, within Psyr_4269 at 5092.816 kb on + strand, within Psyr_4269 at 5092.816 kb on + strand, within Psyr_4269 at 5092.816 kb on + strand, within Psyr_4269 at 5092.971 kb on + strand, within Psyr_4269 at 5092.972 kb on - strand, within Psyr_4269 at 5092.972 kb on - strand, within Psyr_4269 at 5092.972 kb on - strand, within Psyr_4269 at 5093.206 kb on + strand, within Psyr_4269 at 5093.206 kb on + strand, within Psyr_4269 at 5093.207 kb on - strand, within Psyr_4269 at 5093.670 kb on - strand at 5093.787 kb on - strand at 5093.790 kb on + strand at 5093.790 kb on + strand at 5093.790 kb on + strand at 5093.791 kb on - strand at 5093.862 kb on + strand at 5094.056 kb on + strand at 5094.056 kb on + strand at 5094.057 kb on - strand at 5094.066 kb on - strand at 5094.066 kb on - strand at 5094.066 kb on - strand at 5094.066 kb on - strand at 5094.085 kb on + strand at 5094.086 kb on - strand at 5094.152 kb on + strand at 5094.153 kb on - strand at 5094.233 kb on + strand at 5094.234 kb on - strand at 5094.234 kb on - strand at 5094.284 kb on + strand, within Psyr_4270 at 5094.284 kb on + strand, within Psyr_4270 at 5094.284 kb on + strand, within Psyr_4270 at 5094.284 kb on + strand, within Psyr_4270 at 5094.285 kb on - strand, within Psyr_4270 at 5094.285 kb on - strand, within Psyr_4270 at 5094.285 kb on - strand, within Psyr_4270 at 5094.285 kb on - strand, within Psyr_4270 at 5094.285 kb on - strand, within Psyr_4270 at 5094.296 kb on + strand, within Psyr_4270 at 5094.297 kb on - strand, within Psyr_4270 at 5094.314 kb on + strand, within Psyr_4270 at 5094.315 kb on - strand, within Psyr_4270 at 5094.315 kb on - strand, within Psyr_4270 at 5094.329 kb on + strand, within Psyr_4270 at 5094.329 kb on + strand, within Psyr_4270 at 5094.329 kb on + strand, within Psyr_4270 at 5094.329 kb on + strand, within Psyr_4270 at 5094.329 kb on + strand, within Psyr_4270 at 5094.330 kb on - strand, within Psyr_4270 at 5094.539 kb on + strand, within Psyr_4270 at 5094.539 kb on + strand, within Psyr_4270 at 5094.539 kb on + strand, within Psyr_4270 at 5094.540 kb on - strand, within Psyr_4270 at 5094.540 kb on - strand, within Psyr_4270 at 5094.540 kb on - strand, within Psyr_4270 at 5094.650 kb on + strand, within Psyr_4270 at 5094.707 kb on + strand, within Psyr_4270 at 5094.708 kb on - strand, within Psyr_4270
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quinine Hdrochloride 10 mM remove 5,090,315 - Psyr_4268 0.55 -1.5 5,090,391 + Psyr_4268 0.61 +1.6 5,090,391 + Psyr_4268 0.61 +0.1 5,090,391 + Psyr_4268 0.61 +0.1 5,090,391 + Psyr_4268 0.61 -0.2 5,090,391 + Psyr_4268 0.61 -0.7 5,090,392 - Psyr_4268 0.61 -0.1 5,090,392 - Psyr_4268 0.61 +0.4 5,090,392 - Psyr_4268 0.61 -0.3 5,090,475 + Psyr_4268 0.66 +0.1 5,090,583 + Psyr_4268 0.74 -1.2 5,090,584 - Psyr_4268 0.74 +0.6 5,090,584 - Psyr_4268 0.74 -0.4 5,090,584 - Psyr_4268 0.74 +2.7 5,090,646 + Psyr_4268 0.78 +0.1 5,090,817 + Psyr_4268 0.90 -0.6 5,091,034 + +0.1 5,091,035 - -0.3 5,091,035 - -0.8 5,091,100 + -2.2 5,091,101 - +0.3 5,091,193 + -0.1 5,091,194 - -0.2 5,091,194 - +0.4 5,091,259 + +0.9 5,091,507 + Psyr_4269 0.17 +0.6 5,091,619 + Psyr_4269 0.21 +0.5 5,091,619 + Psyr_4269 0.21 -0.3 5,091,619 + Psyr_4269 0.21 +0.9 5,091,620 - Psyr_4269 0.21 +0.9 5,091,727 + Psyr_4269 0.25 -1.2 5,091,727 + Psyr_4269 0.25 +0.7 5,091,727 + Psyr_4269 0.25 +0.3 5,091,728 - Psyr_4269 0.25 -0.1 5,091,775 + Psyr_4269 0.27 +0.9 5,091,775 + Psyr_4269 0.27 -0.7 5,091,776 - Psyr_4269 0.27 +0.6 5,091,776 - Psyr_4269 0.27 +0.8 5,091,943 - Psyr_4269 0.33 +0.4 5,092,069 + Psyr_4269 0.38 +0.2 5,092,181 - Psyr_4269 0.42 +1.1 5,092,182 - Psyr_4269 0.42 +0.4 5,092,523 + Psyr_4269 0.54 +0.2 5,092,670 + Psyr_4269 0.60 -0.9 5,092,671 - Psyr_4269 0.60 -0.3 5,092,816 + Psyr_4269 0.65 +0.3 5,092,816 + Psyr_4269 0.65 -0.1 5,092,816 + Psyr_4269 0.65 +1.3 5,092,971 + Psyr_4269 0.71 -0.1 5,092,972 - Psyr_4269 0.71 +0.2 5,092,972 - Psyr_4269 0.71 -0.1 5,092,972 - Psyr_4269 0.71 +0.5 5,093,206 + Psyr_4269 0.79 -0.2 5,093,206 + Psyr_4269 0.79 +0.3 5,093,207 - Psyr_4269 0.79 -1.4 5,093,670 - +0.5 5,093,787 - -0.4 5,093,790 + -0.4 5,093,790 + -0.4 5,093,790 + +0.3 5,093,791 - -0.1 5,093,862 + -0.9 5,094,056 + -0.3 5,094,056 + +1.4 5,094,057 - +0.5 5,094,066 - +0.0 5,094,066 - +1.9 5,094,066 - +0.1 5,094,066 - -1.0 5,094,085 + +0.0 5,094,086 - +0.2 5,094,152 + +0.6 5,094,153 - +0.1 5,094,233 + +0.5 5,094,234 - -0.1 5,094,234 - +0.6 5,094,284 + Psyr_4270 0.13 +1.3 5,094,284 + Psyr_4270 0.13 -1.3 5,094,284 + Psyr_4270 0.13 +0.7 5,094,284 + Psyr_4270 0.13 +3.1 5,094,285 - Psyr_4270 0.13 -0.5 5,094,285 - Psyr_4270 0.13 +0.4 5,094,285 - Psyr_4270 0.13 +0.4 5,094,285 - Psyr_4270 0.13 -1.0 5,094,285 - Psyr_4270 0.13 -0.4 5,094,296 + Psyr_4270 0.14 +0.0 5,094,297 - Psyr_4270 0.14 -0.8 5,094,314 + Psyr_4270 0.15 +0.4 5,094,315 - Psyr_4270 0.15 +0.4 5,094,315 - Psyr_4270 0.15 +1.3 5,094,329 + Psyr_4270 0.17 -0.6 5,094,329 + Psyr_4270 0.17 +0.1 5,094,329 + Psyr_4270 0.17 +0.1 5,094,329 + Psyr_4270 0.17 +0.1 5,094,329 + Psyr_4270 0.17 +0.9 5,094,330 - Psyr_4270 0.17 +3.1 5,094,539 + Psyr_4270 0.33 +1.1 5,094,539 + Psyr_4270 0.33 -0.9 5,094,539 + Psyr_4270 0.33 -0.3 5,094,540 - Psyr_4270 0.33 +1.0 5,094,540 - Psyr_4270 0.33 -0.6 5,094,540 - Psyr_4270 0.33 -0.3 5,094,650 + Psyr_4270 0.42 +0.5 5,094,707 + Psyr_4270 0.47 -0.5 5,094,708 - Psyr_4270 0.47 +0.6
Or see this region's nucleotide sequence