Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2646

Experiment: KB with Quinine Hdrochloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2645 and Psyr_2646 are separated by 632 nucleotidesPsyr_2646 and Psyr_2647 are separated by 88 nucleotidesPsyr_2647 and Psyr_2648 overlap by 16 nucleotides Psyr_2645: Psyr_2645 - hypothetical protein, at 3,215,082 to 3,215,459 _2645 Psyr_2646: Psyr_2646 - Radical SAM, at 3,216,092 to 3,218,263 _2646 Psyr_2647: Psyr_2647 - hypothetical protein, at 3,218,352 to 3,219,233 _2647 Psyr_2648: Psyr_2648 - hypothetical protein, at 3,219,218 to 3,220,411 _2648 Position (kb) 3216 3217 3218 3219Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3215.095 kb on - strandat 3215.095 kb on - strandat 3215.215 kb on + strand, within Psyr_2645at 3215.240 kb on - strand, within Psyr_2645at 3215.240 kb on - strand, within Psyr_2645at 3215.240 kb on - strand, within Psyr_2645at 3215.240 kb on - strand, within Psyr_2645at 3215.240 kb on - strand, within Psyr_2645at 3215.287 kb on + strand, within Psyr_2645at 3215.287 kb on + strand, within Psyr_2645at 3215.288 kb on - strand, within Psyr_2645at 3215.288 kb on - strand, within Psyr_2645at 3215.288 kb on - strand, within Psyr_2645at 3215.288 kb on - strand, within Psyr_2645at 3215.288 kb on - strand, within Psyr_2645at 3215.288 kb on - strand, within Psyr_2645at 3215.399 kb on + strand, within Psyr_2645at 3215.399 kb on + strand, within Psyr_2645at 3215.405 kb on + strand, within Psyr_2645at 3215.405 kb on + strand, within Psyr_2645at 3215.405 kb on + strand, within Psyr_2645at 3215.405 kb on + strand, within Psyr_2645at 3215.406 kb on - strand, within Psyr_2645at 3215.646 kb on + strandat 3215.646 kb on + strandat 3215.646 kb on + strandat 3215.646 kb on + strandat 3215.646 kb on + strandat 3215.646 kb on + strandat 3215.646 kb on + strandat 3215.646 kb on + strandat 3215.646 kb on + strandat 3215.646 kb on + strandat 3215.646 kb on + strandat 3215.646 kb on + strandat 3215.646 kb on + strandat 3215.646 kb on + strandat 3215.647 kb on - strandat 3215.647 kb on - strandat 3215.647 kb on - strandat 3215.647 kb on - strandat 3215.647 kb on - strandat 3215.732 kb on - strandat 3215.746 kb on - strandat 3215.786 kb on - strandat 3216.027 kb on + strandat 3216.027 kb on + strandat 3216.027 kb on + strandat 3216.028 kb on - strandat 3216.047 kb on + strandat 3216.047 kb on + strandat 3216.047 kb on + strandat 3216.048 kb on - strandat 3216.048 kb on - strandat 3216.055 kb on + strandat 3216.164 kb on + strandat 3216.165 kb on - strandat 3216.165 kb on - strandat 3216.165 kb on - strandat 3216.165 kb on - strandat 3216.165 kb on - strandat 3216.165 kb on - strandat 3216.165 kb on - strandat 3216.165 kb on - strandat 3216.170 kb on + strandat 3216.171 kb on - strandat 3216.171 kb on - strandat 3216.171 kb on - strandat 3216.257 kb on + strandat 3216.257 kb on + strandat 3216.258 kb on - strandat 3216.328 kb on - strand, within Psyr_2646at 3216.570 kb on - strand, within Psyr_2646at 3216.638 kb on + strand, within Psyr_2646at 3216.639 kb on - strand, within Psyr_2646at 3216.639 kb on - strand, within Psyr_2646at 3216.734 kb on + strand, within Psyr_2646at 3216.735 kb on - strand, within Psyr_2646at 3216.899 kb on - strand, within Psyr_2646at 3216.899 kb on - strand, within Psyr_2646at 3216.902 kb on + strand, within Psyr_2646at 3216.902 kb on + strand, within Psyr_2646at 3216.903 kb on - strand, within Psyr_2646at 3216.903 kb on - strand, within Psyr_2646at 3216.903 kb on - strand, within Psyr_2646at 3216.903 kb on - strand, within Psyr_2646at 3217.132 kb on + strand, within Psyr_2646at 3217.139 kb on + strand, within Psyr_2646at 3217.139 kb on + strand, within Psyr_2646at 3217.139 kb on + strand, within Psyr_2646at 3217.164 kb on + strand, within Psyr_2646at 3217.165 kb on - strand, within Psyr_2646at 3217.266 kb on + strand, within Psyr_2646at 3217.353 kb on + strand, within Psyr_2646at 3217.353 kb on + strand, within Psyr_2646at 3217.353 kb on + strand, within Psyr_2646at 3217.353 kb on + strand, within Psyr_2646at 3217.353 kb on + strand, within Psyr_2646at 3217.353 kb on + strand, within Psyr_2646at 3217.353 kb on + strand, within Psyr_2646at 3217.353 kb on + strand, within Psyr_2646at 3217.354 kb on - strand, within Psyr_2646at 3217.354 kb on - strand, within Psyr_2646at 3217.354 kb on - strand, within Psyr_2646at 3217.354 kb on - strand, within Psyr_2646at 3217.354 kb on - strandat 3217.354 kb on - strand, within Psyr_2646at 3217.354 kb on - strand, within Psyr_2646at 3217.354 kb on - strand, within Psyr_2646at 3217.354 kb on - strand, within Psyr_2646at 3217.354 kb on - strand, within Psyr_2646at 3217.414 kb on - strand, within Psyr_2646at 3217.459 kb on - strand, within Psyr_2646at 3217.469 kb on - strand, within Psyr_2646at 3217.524 kb on - strand, within Psyr_2646at 3217.524 kb on - strand, within Psyr_2646at 3217.689 kb on + strand, within Psyr_2646at 3217.820 kb on + strand, within Psyr_2646at 3217.820 kb on + strand, within Psyr_2646at 3217.820 kb on + strand, within Psyr_2646at 3217.820 kb on + strand, within Psyr_2646at 3217.820 kb on + strand, within Psyr_2646at 3217.820 kb on + strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.859 kb on + strand, within Psyr_2646at 3217.907 kb on + strand, within Psyr_2646at 3217.908 kb on - strand, within Psyr_2646at 3217.908 kb on - strand, within Psyr_2646at 3217.935 kb on + strand, within Psyr_2646at 3217.936 kb on - strand, within Psyr_2646at 3217.945 kb on + strand, within Psyr_2646at 3217.945 kb on + strand, within Psyr_2646at 3217.946 kb on - strand, within Psyr_2646at 3218.295 kb on + strandat 3218.296 kb on - strandat 3218.327 kb on + strandat 3218.327 kb on + strandat 3218.328 kb on - strandat 3218.328 kb on - strandat 3218.328 kb on - strandat 3218.328 kb on - strandat 3218.379 kb on + strandat 3218.457 kb on - strand, within Psyr_2647at 3218.457 kb on - strand, within Psyr_2647at 3218.457 kb on - strand, within Psyr_2647at 3218.492 kb on + strand, within Psyr_2647at 3218.492 kb on + strand, within Psyr_2647at 3218.493 kb on - strand, within Psyr_2647at 3218.549 kb on + strand, within Psyr_2647at 3218.550 kb on - strand, within Psyr_2647at 3218.577 kb on - strand, within Psyr_2647at 3218.577 kb on - strand, within Psyr_2647at 3218.790 kb on - strand, within Psyr_2647at 3218.806 kb on + strand, within Psyr_2647at 3218.806 kb on + strand, within Psyr_2647at 3218.806 kb on + strand, within Psyr_2647at 3218.806 kb on + strand, within Psyr_2647at 3218.825 kb on + strand, within Psyr_2647at 3218.825 kb on + strand, within Psyr_2647at 3218.826 kb on - strand, within Psyr_2647at 3218.826 kb on - strand, within Psyr_2647at 3218.826 kb on - strand, within Psyr_2647at 3218.826 kb on - strand, within Psyr_2647at 3218.909 kb on + strand, within Psyr_2647at 3218.910 kb on - strand, within Psyr_2647at 3218.985 kb on + strandat 3218.985 kb on + strand, within Psyr_2647at 3218.986 kb on - strand, within Psyr_2647at 3218.986 kb on - strand, within Psyr_2647at 3218.986 kb on - strand, within Psyr_2647at 3219.012 kb on - strand, within Psyr_2647at 3219.041 kb on - strand, within Psyr_2647at 3219.095 kb on - strand, within Psyr_2647at 3219.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Quinine Hdrochloride 10 mM
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3,215,095 - +0.0
3,215,095 - +1.3
3,215,215 + Psyr_2645 0.35 -0.7
3,215,240 - Psyr_2645 0.42 -1.2
3,215,240 - Psyr_2645 0.42 -1.4
3,215,240 - Psyr_2645 0.42 +0.6
3,215,240 - Psyr_2645 0.42 -1.2
3,215,240 - Psyr_2645 0.42 -0.1
3,215,287 + Psyr_2645 0.54 +0.5
3,215,287 + Psyr_2645 0.54 -1.7
3,215,288 - Psyr_2645 0.54 +0.6
3,215,288 - Psyr_2645 0.54 -0.3
3,215,288 - Psyr_2645 0.54 -0.9
3,215,288 - Psyr_2645 0.54 +0.1
3,215,288 - Psyr_2645 0.54 +0.0
3,215,288 - Psyr_2645 0.54 +2.5
3,215,399 + Psyr_2645 0.84 -1.1
3,215,399 + Psyr_2645 0.84 +0.3
3,215,405 + Psyr_2645 0.85 -0.6
3,215,405 + Psyr_2645 0.85 +0.3
3,215,405 + Psyr_2645 0.85 -0.7
3,215,405 + Psyr_2645 0.85 -0.5
3,215,406 - Psyr_2645 0.86 +1.3
3,215,646 + -0.3
3,215,646 + -0.2
3,215,646 + -0.7
3,215,646 + -1.0
3,215,646 + +1.7
3,215,646 + +0.0
3,215,646 + -0.7
3,215,646 + -0.4
3,215,646 + -2.0
3,215,646 + -1.6
3,215,646 + -0.1
3,215,646 + +0.7
3,215,646 + -1.1
3,215,646 + -0.5
3,215,647 - +0.8
3,215,647 - +2.1
3,215,647 - -0.8
3,215,647 - +0.8
3,215,647 - +0.9
3,215,732 - -0.3
3,215,746 - +0.6
3,215,786 - -0.3
3,216,027 + -0.9
3,216,027 + +1.3
3,216,027 + +0.5
3,216,028 - -0.1
3,216,047 + +0.1
3,216,047 + +0.7
3,216,047 + -0.3
3,216,048 - +0.8
3,216,048 - +0.9
3,216,055 + +0.1
3,216,164 + -0.0
3,216,165 - -0.9
3,216,165 - +1.4
3,216,165 - -2.3
3,216,165 - +0.8
3,216,165 - +0.1
3,216,165 - +1.1
3,216,165 - -1.3
3,216,165 - -0.1
3,216,170 + +0.9
3,216,171 - -1.3
3,216,171 - +1.3
3,216,171 - -1.3
3,216,257 + +1.3
3,216,257 + +0.9
3,216,258 - +0.4
3,216,328 - Psyr_2646 0.11 +0.5
3,216,570 - Psyr_2646 0.22 +0.0
3,216,638 + Psyr_2646 0.25 +0.9
3,216,639 - Psyr_2646 0.25 +0.1
3,216,639 - Psyr_2646 0.25 +0.5
3,216,734 + Psyr_2646 0.30 +2.3
3,216,735 - Psyr_2646 0.30 +1.2
3,216,899 - Psyr_2646 0.37 +1.7
3,216,899 - Psyr_2646 0.37 +2.6
3,216,902 + Psyr_2646 0.37 -0.4
3,216,902 + Psyr_2646 0.37 +1.0
3,216,903 - Psyr_2646 0.37 +1.1
3,216,903 - Psyr_2646 0.37 +1.3
3,216,903 - Psyr_2646 0.37 +0.5
3,216,903 - Psyr_2646 0.37 +1.5
3,217,132 + Psyr_2646 0.48 +0.3
3,217,139 + Psyr_2646 0.48 -0.5
3,217,139 + Psyr_2646 0.48 +1.3
3,217,139 + Psyr_2646 0.48 +1.1
3,217,164 + Psyr_2646 0.49 -0.5
3,217,165 - Psyr_2646 0.49 +0.1
3,217,266 + Psyr_2646 0.54 +0.5
3,217,353 + Psyr_2646 0.58 -0.5
3,217,353 + Psyr_2646 0.58 +1.5
3,217,353 + Psyr_2646 0.58 +0.5
3,217,353 + Psyr_2646 0.58 +0.9
3,217,353 + Psyr_2646 0.58 +0.5
3,217,353 + Psyr_2646 0.58 -1.2
3,217,353 + Psyr_2646 0.58 +1.9
3,217,353 + Psyr_2646 0.58 -0.2
3,217,354 - Psyr_2646 0.58 -1.1
3,217,354 - Psyr_2646 0.58 +1.1
3,217,354 - Psyr_2646 0.58 -3.0
3,217,354 - Psyr_2646 0.58 +1.7
3,217,354 - +1.3
3,217,354 - Psyr_2646 0.58 -2.1
3,217,354 - Psyr_2646 0.58 +1.7
3,217,354 - Psyr_2646 0.58 +0.7
3,217,354 - Psyr_2646 0.58 +1.3
3,217,354 - Psyr_2646 0.58 -2.6
3,217,414 - Psyr_2646 0.61 +0.3
3,217,459 - Psyr_2646 0.63 -0.1
3,217,469 - Psyr_2646 0.63 -0.4
3,217,524 - Psyr_2646 0.66 -1.1
3,217,524 - Psyr_2646 0.66 -0.7
3,217,689 + Psyr_2646 0.74 -0.1
3,217,820 + Psyr_2646 0.80 +0.0
3,217,820 + Psyr_2646 0.80 +0.7
3,217,820 + Psyr_2646 0.80 -0.1
3,217,820 + Psyr_2646 0.80 -0.4
3,217,820 + Psyr_2646 0.80 +1.0
3,217,820 + Psyr_2646 0.80 +0.5
3,217,821 - Psyr_2646 0.80 +0.3
3,217,821 - Psyr_2646 0.80 -2.4
3,217,821 - Psyr_2646 0.80 +0.9
3,217,821 - Psyr_2646 0.80 +1.1
3,217,821 - Psyr_2646 0.80 +0.9
3,217,821 - Psyr_2646 0.80 +1.3
3,217,821 - Psyr_2646 0.80 +0.3
3,217,821 - Psyr_2646 0.80 +1.0
3,217,821 - Psyr_2646 0.80 +1.7
3,217,821 - Psyr_2646 0.80 +1.0
3,217,859 + Psyr_2646 0.81 +0.3
3,217,907 + Psyr_2646 0.84 +2.3
3,217,908 - Psyr_2646 0.84 +1.3
3,217,908 - Psyr_2646 0.84 -0.5
3,217,935 + Psyr_2646 0.85 +1.8
3,217,936 - Psyr_2646 0.85 +0.5
3,217,945 + Psyr_2646 0.85 +1.1
3,217,945 + Psyr_2646 0.85 +1.9
3,217,946 - Psyr_2646 0.85 +0.6
3,218,295 + +1.5
3,218,296 - +1.3
3,218,327 + -2.3
3,218,327 + +2.0
3,218,328 - -0.8
3,218,328 - +0.8
3,218,328 - +0.4
3,218,328 - -0.3
3,218,379 + +0.8
3,218,457 - Psyr_2647 0.12 +1.1
3,218,457 - Psyr_2647 0.12 -0.1
3,218,457 - Psyr_2647 0.12 +1.0
3,218,492 + Psyr_2647 0.16 +2.1
3,218,492 + Psyr_2647 0.16 +1.3
3,218,493 - Psyr_2647 0.16 +0.3
3,218,549 + Psyr_2647 0.22 -1.3
3,218,550 - Psyr_2647 0.22 -1.2
3,218,577 - Psyr_2647 0.26 +0.3
3,218,577 - Psyr_2647 0.26 -0.3
3,218,790 - Psyr_2647 0.50 +0.2
3,218,806 + Psyr_2647 0.51 +1.4
3,218,806 + Psyr_2647 0.51 -0.2
3,218,806 + Psyr_2647 0.51 -1.7
3,218,806 + Psyr_2647 0.51 +0.2
3,218,825 + Psyr_2647 0.54 -0.2
3,218,825 + Psyr_2647 0.54 -0.6
3,218,826 - Psyr_2647 0.54 +1.3
3,218,826 - Psyr_2647 0.54 +0.8
3,218,826 - Psyr_2647 0.54 +1.4
3,218,826 - Psyr_2647 0.54 -0.1
3,218,909 + Psyr_2647 0.63 +0.2
3,218,910 - Psyr_2647 0.63 -1.1
3,218,985 + +2.8
3,218,985 + Psyr_2647 0.72 +0.5
3,218,986 - Psyr_2647 0.72 -0.1
3,218,986 - Psyr_2647 0.72 +0.3
3,218,986 - Psyr_2647 0.72 -0.0
3,219,012 - Psyr_2647 0.75 +0.7
3,219,041 - Psyr_2647 0.78 -0.4
3,219,095 - Psyr_2647 0.84 +0.4
3,219,235 + +1.6

Or see this region's nucleotide sequence