Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1538

Experiment: KB with Quinine Hdrochloride 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Quinine Hdrochloride 10 mM
1,728,007	+		Psyr_1537	0.38	-0.2
1,728,014	-		Psyr_1537	0.39	+1.1
1,728,035	+		Psyr_1537	0.40	-0.6
1,728,095	+		Psyr_1537	0.45	+0.1
1,728,095	+		Psyr_1537	0.45	-0.2
1,728,096	-		Psyr_1537	0.45	+0.5
1,728,150	+		Psyr_1537	0.49	-0.2
1,728,151	-		Psyr_1537	0.49	+0.4
1,728,151	-		Psyr_1537	0.49	-0.4
1,728,373	-				+1.1
1,728,437	+		Psyr_1537	0.70	-0.3
1,728,437	+		Psyr_1537	0.70	-0.8
1,728,466	+		Psyr_1537	0.72	-0.4
1,728,467	-		Psyr_1537	0.72	+0.2
1,728,467	-		Psyr_1537	0.72	+1.7
1,728,505	+		Psyr_1537	0.75	-0.5
1,728,519	+		Psyr_1537	0.76	+0.3
1,728,519	+		Psyr_1537	0.76	-0.6
1,728,519	+		Psyr_1537	0.76	+0.1
1,728,520	-		Psyr_1537	0.76	-0.5
1,728,571	+		Psyr_1537	0.80	-0.2
1,728,571	+		Psyr_1537	0.80	-0.2
1,728,571	+		Psyr_1537	0.80	-0.2
1,728,571	+		Psyr_1537	0.80	-0.9
1,728,572	-		Psyr_1537	0.80	-1.0
1,728,572	-		Psyr_1537	0.80	+1.5
1,728,572	-		Psyr_1537	0.80	+1.2
1,728,587	+		Psyr_1537	0.81	+1.9
1,728,588	-		Psyr_1537	0.81	-0.5
1,728,588	-		Psyr_1537	0.81	-1.2
1,728,713	+				-1.0
1,728,713	+				+0.8
1,728,713	+				-0.5
1,728,713	+				-0.7
1,728,714	-				-0.5
1,728,714	-				-2.0
1,728,714	-				-1.0
1,728,714	-				+0.5
1,728,812	+				+0.1
1,728,812	+				-1.0
1,728,812	+				+0.2
1,728,812	+				-0.6
1,728,812	+				-0.0
1,728,813	-				+3.0
1,728,814	+				-0.3
1,728,814	+				+1.1
1,728,815	-				+0.4
1,728,815	-				+0.7
1,728,815	-				+0.3
1,728,815	-				-1.9
1,728,823	+				+0.1
1,728,823	+				+0.2
1,728,823	+				-0.5
1,728,823	+				-0.9
1,728,823	+				+0.5
1,728,823	+				+0.1
1,728,824	-				+0.0
1,728,824	-				+0.7
1,728,824	-				-2.7
1,728,824	-				-1.0
1,728,824	-				-0.2
1,728,826	+				+0.0
1,728,885	+				+1.1
1,728,886	-				+0.3
1,728,889	+				-1.1
1,728,890	-				-0.3
1,728,890	-				+0.0
1,728,941	+				-0.8
1,728,959	+				+0.4
1,728,960	-				-0.9
1,729,035	+				-0.9
1,729,035	+				-1.3
1,729,035	+				+0.5
1,729,035	+				-0.5
1,729,035	+				-0.7
1,729,035	+				+0.5
1,729,035	+				-1.3
1,729,035	+				+0.1
1,729,035	+				-0.7
1,729,035	+				-0.2
1,729,035	+				+0.4
1,729,035	+				-0.3
1,729,035	+				+0.8
1,729,035	+				+0.0
1,729,035	+				+0.9
1,729,035	+				-1.2
1,729,036	-				+1.1
1,729,036	-				+0.8
1,729,036	-				-0.9
1,729,036	-				+0.8
1,729,036	-				-0.4
1,729,036	-				+0.3
1,729,036	-				+0.1
1,729,036	-				-0.6
1,729,036	-				+0.8
1,729,036	-				-0.4
1,729,036	-				-0.1
1,729,036	-				-0.2
1,729,149	-		Psyr_1538	0.17	-0.9
1,729,149	-		Psyr_1538	0.17	-0.3
1,729,149	-		Psyr_1538	0.17	+0.3
1,729,152	+		Psyr_1538	0.17	-0.4
1,729,152	+		Psyr_1538	0.17	+0.9
1,729,152	+		Psyr_1538	0.17	+0.4
1,729,152	+		Psyr_1538	0.17	+0.1
1,729,153	-		Psyr_1538	0.17	-0.7
1,729,153	-		Psyr_1538	0.17	-1.5
1,729,153	-		Psyr_1538	0.17	-0.3
1,729,153	-		Psyr_1538	0.17	+1.0
1,729,154	+		Psyr_1538	0.17	-1.3
1,729,155	-		Psyr_1538	0.18	+0.5
1,729,163	+		Psyr_1538	0.18	+0.1
1,729,178	+		Psyr_1538	0.19	+0.0
1,729,200	-		Psyr_1538	0.21	-0.2
1,729,200	-		Psyr_1538	0.21	-0.5
1,729,223	+		Psyr_1538	0.23	+0.1
1,729,224	-		Psyr_1538	0.23	-0.5
1,729,345	+		Psyr_1538	0.31	-1.1
1,729,552	+		Psyr_1538	0.47	+1.4
1,729,552	+		Psyr_1538	0.47	-0.8
1,729,552	+		Psyr_1538	0.47	-1.0
1,729,552	+		Psyr_1538	0.47	-0.1
1,729,552	+		Psyr_1538	0.47	-0.4
1,729,552	+		Psyr_1538	0.47	-1.8
1,729,552	+		Psyr_1538	0.47	-1.9
1,729,552	+		Psyr_1538	0.47	-0.6
1,729,552	+		Psyr_1538	0.47	-1.1
1,729,552	+		Psyr_1538	0.47	-0.1
1,729,552	+		Psyr_1538	0.47	-3.8
1,729,552	+		Psyr_1538	0.47	-0.4
1,729,553	-		Psyr_1538	0.47	-1.2
1,729,553	-		Psyr_1538	0.47	-0.2
1,729,553	-		Psyr_1538	0.47	-0.8
1,729,553	-		Psyr_1538	0.47	-0.7
1,729,553	-		Psyr_1538	0.47	-0.7
1,729,553	-		Psyr_1538	0.47	+1.1
1,729,553	-		Psyr_1538	0.47	-1.3
1,729,553	-		Psyr_1538	0.47	-0.9
1,729,553	-		Psyr_1538	0.47	+2.3
1,729,554	+		Psyr_1538	0.47	-0.5
1,729,554	+		Psyr_1538	0.47	-0.1
1,729,554	+		Psyr_1538	0.47	-0.2
1,729,554	+		Psyr_1538	0.47	-1.1
1,729,581	+		Psyr_1538	0.49	-0.3
1,729,582	-		Psyr_1538	0.49	+0.4
1,729,582	-		Psyr_1538	0.49	-1.6
1,729,582	-		Psyr_1538	0.49	+0.5
1,729,640	+		Psyr_1538	0.53	-1.0
1,729,640	+		Psyr_1538	0.53	+0.8
1,729,641	-		Psyr_1538	0.53	-1.4
1,729,643	+		Psyr_1538	0.53	-0.9
1,729,644	-				-1.2
1,729,670	-		Psyr_1538	0.55	-0.9
1,729,670	-		Psyr_1538	0.55	-0.2
1,729,670	-		Psyr_1538	0.55	+0.8
1,729,732	+		Psyr_1538	0.60	+0.2
1,729,733	-		Psyr_1538	0.60	-1.5
1,729,809	+		Psyr_1538	0.65	-0.6
1,729,810	-		Psyr_1538	0.65	+0.2
1,729,810	-		Psyr_1538	0.65	+0.4
1,729,826	+		Psyr_1538	0.67	+0.5
1,729,849	+		Psyr_1538	0.68	+0.3
1,729,849	+		Psyr_1538	0.68	-0.0
1,729,850	-		Psyr_1538	0.68	-0.2
1,729,850	-		Psyr_1538	0.68	-0.6
1,729,889	+		Psyr_1538	0.71	-0.2
1,729,890	-		Psyr_1538	0.71	+0.1
1,729,890	-		Psyr_1538	0.71	-0.9
1,729,955	-		Psyr_1538	0.76	-0.5
1,729,955	-		Psyr_1538	0.76	-2.5
1,729,967	+		Psyr_1538	0.77	+0.0
1,729,967	+		Psyr_1538	0.77	-0.1
1,730,013	+		Psyr_1538	0.80	+0.4
1,730,014	-		Psyr_1538	0.80	+0.1
1,730,014	-		Psyr_1538	0.80	-3.0
1,730,029	-		Psyr_1538	0.81	+0.1
1,730,029	-		Psyr_1538	0.81	-0.2
1,730,029	-		Psyr_1538	0.81	-2.0
1,730,029	-		Psyr_1538	0.81	+0.5
1,730,088	-		Psyr_1538	0.86	-0.1
1,730,088	-		Psyr_1538	0.86	-0.3
1,730,088	-		Psyr_1538	0.86	-0.6
1,730,089	+		Psyr_1538	0.86	-0.0
1,730,089	+		Psyr_1538	0.86	+0.5
1,730,089	+		Psyr_1538	0.86	+0.5
1,730,089	+		Psyr_1538	0.86	+0.7
1,730,089	+		Psyr_1538	0.86	+0.2
1,730,089	+		Psyr_1538	0.86	-0.5
1,730,089	+		Psyr_1538	0.86	-1.8
1,730,090	-		Psyr_1538	0.86	-1.2
1,730,090	-		Psyr_1538	0.86	-0.1
1,730,108	+		Psyr_1538	0.87	+0.3
1,730,109	-		Psyr_1538	0.87	-1.0
1,730,246	+				+0.8
1,730,268	+				+0.4
1,730,268	+				-1.0
1,730,268	+				+0.3
1,730,334	-				+3.4
1,730,334	-				+0.3
1,730,455	+				-0.5
1,730,456	-				+0.0
1,730,456	-				-2.2
1,730,456	-				-1.9
1,730,457	+				-0.0
1,730,457	+				+2.4
1,730,457	+				-0.9
1,730,457	+				+0.3
1,730,457	+				+0.8
1,730,457	+				-0.2
1,730,457	+				-1.0
1,730,457	+				+0.0
1,730,457	+				-0.3
1,730,457	+				-1.4
1,730,458	-				+0.2
1,730,458	-				+1.4
1,730,458	-				-0.7
1,730,458	-				-1.1
1,730,458	-				+0.2
1,730,458	-				-0.3
1,730,458	-				+0.5
1,730,458	-				-0.4
1,730,458	-				-0.4
1,730,458	-				-0.5
1,730,549	+				+1.0
1,730,549	+				-0.3
1,730,549	+				+0.5
1,730,549	+				-1.5
1,730,549	+				+0.2
1,730,549	+				-0.5
1,730,549	+				-0.9
1,730,549	+				-0.5
1,730,549	+				-0.3
1,730,549	+				+0.1
1,730,550	-				+0.3
1,730,550	-				-0.3
1,730,550	-				+0.8
1,730,550	-				-1.5
1,730,550	-				+0.1
1,730,550	-				+0.3
1,730,550	-				-0.0
1,730,550	-				-1.0
1,730,550	-				-0.7
1,730,550	-				-0.1
1,730,550	-				+1.7
1,730,550	-				+0.9
1,730,556	+				+0.4
1,730,556	+				-0.8
1,730,556	+				+0.3
1,730,556	+				+0.4
1,730,556	+				-1.0
1,730,556	+				-0.1
1,730,556	+				+1.1
1,730,556	+				-2.0
1,730,556	+				-1.3
1,730,556	+				-2.2
1,730,556	+				-0.7
1,730,556	+				-0.4
1,730,556	+				-0.0
1,730,556	+				-0.1
1,730,556	+				-1.0
1,730,556	+				+1.0
1,730,557	-				-0.6
1,730,557	-				+0.4
1,730,557	-				+0.4
1,730,557	-				-1.0
1,730,557	-				-1.9
1,730,557	-				-0.2
1,730,557	-				-0.3
1,730,557	-				-1.0
1,730,557	-				-1.1
1,730,557	-				-1.1
1,730,557	-				-1.0
1,730,572	-				-1.0
1,730,603	+				+0.6
1,730,603	+				-0.4
1,730,603	+				+0.6
1,730,604	-				+0.4
1,730,604	-				-0.3
1,730,604	-				-0.2
1,730,604	-				+1.4
1,730,604	-				+0.1
1,730,721	+				+2.7
1,730,722	-				-0.8
1,730,722	-				-0.4
1,730,808	+				-0.2
1,730,808	+				+0.1
1,730,808	+				+0.3
1,730,808	+				-0.1
1,730,919	+				-0.0
1,730,920	-				-2.1
1,730,991	+				-0.7
1,730,992	-				-1.8
1,730,992	-				-0.6
1,730,992	-				+0.3
1,730,992	-				-0.2
1,730,992	-				+0.8
1,730,992	-				-0.1
1,731,065	+				-2.3
1,731,065	+				+0.1
1,731,065	+				-0.9
1,731,065	+				-0.0
1,731,065	+				+0.4
1,731,065	+				-0.3
1,731,065	+				-0.7
1,731,065	+				-1.8
1,731,065	+				+0.7
1,731,065	+				-1.7
1,731,065	+				-2.0
1,731,065	+				-0.5
1,731,066	-				-0.9
1,731,066	-				+0.4
1,731,066	-				-1.4
1,731,066	-				-0.7
1,731,066	-				+0.5
1,731,066	-				+0.1
1,731,066	-				-0.5
1,731,066	-				+0.5
1,731,066	-				+0.4
1,731,066	-				-0.9
1,731,066	-				-0.3
1,731,066	-				-0.1
1,731,066	-				+0.3
1,731,066	-				-0.1
1,731,066	-				+0.6
1,731,069	+				-2.3
1,731,069	+				-0.7
1,731,069	+				-1.9
1,731,103	-				+2.1
1,731,128	+				+1.5
1,731,128	+				+1.5
1,731,129	-				-0.1
1,731,129	-				-0.4
1,731,129	-				+0.6
1,731,222	+				-0.1
1,731,222	+				-0.2
1,731,237	+				-0.0
1,731,237	+				+0.5
1,731,238	-				-1.7
1,731,238	-				+0.4
1,731,238	-				+1.3
1,731,238	-				-0.6
1,731,238	-				+0.1
1,731,238	-				+0.8
1,731,238	-				+0.5
1,731,238	-				-0.5
1,731,247	+				+0.2
1,731,247	+				+1.8
1,731,247	+				+0.2
1,731,248	-				+0.4
1,731,248	-				+0.2
1,731,248	-				-2.2
1,731,252	-				+0.9
1,731,268	+				-0.2
1,731,268	+				-0.3
1,731,268	+				+0.4
1,731,269	-				-1.9
1,731,269	-				-0.2
1,731,269	-				+0.7
1,731,269	-				+0.3
1,731,269	-				-1.3
1,731,269	-				+0.5
1,731,273	+				+1.1
1,731,273	+				+0.8
1,731,274	-				-0.5
1,731,274	-				+1.1
1,731,274	-				-0.9
1,731,274	-				+0.6