Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1204

Experiment: KB with Quinine Hdrochloride 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Quinine Hdrochloride 10 mM
1,360,922	+				+0.2
1,360,926	-				-0.2
1,360,939	+				+0.0
1,360,939	+				-0.8
1,360,939	+				+0.6
1,360,939	+				-1.3
1,360,939	+				+0.8
1,360,939	+				+0.1
1,360,940	-				-1.8
1,360,940	-				-0.5
1,360,940	-				-0.7
1,360,940	-				-0.5
1,360,940	-				-0.6
1,360,948	+				-0.8
1,360,949	-				+0.8
1,360,992	+				-0.3
1,360,993	-				+0.8
1,360,998	-				-0.1
1,360,998	-				+0.1
1,361,042	+				+0.0
1,361,043	-				+0.5
1,361,043	-				-0.1
1,361,047	-				-0.9
1,361,138	+		Psyr_1203	0.11	+0.5
1,361,138	+		Psyr_1203	0.11	-1.2
1,361,139	-		Psyr_1203	0.11	-1.0
1,361,139	-		Psyr_1203	0.11	+0.0
1,361,139	-		Psyr_1203	0.11	-0.3
1,361,157	+		Psyr_1203	0.13	+0.0
1,361,158	-		Psyr_1203	0.14	+0.3
1,361,158	-		Psyr_1203	0.14	-0.4
1,361,160	+		Psyr_1203	0.14	-1.3
1,361,270	+		Psyr_1203	0.27	-1.0
1,361,270	+		Psyr_1203	0.27	+0.4
1,361,317	+		Psyr_1203	0.32	+0.4
1,361,317	+		Psyr_1203	0.32	-1.5
1,361,318	-		Psyr_1203	0.32	-0.2
1,361,341	-		Psyr_1203	0.35	+0.9
1,361,355	+		Psyr_1203	0.36	-0.8
1,361,355	+		Psyr_1203	0.36	-2.3
1,361,409	+		Psyr_1203	0.43	+0.2
1,361,438	+		Psyr_1203	0.46	-1.0
1,361,438	+		Psyr_1203	0.46	-1.5
1,361,438	+		Psyr_1203	0.46	-2.1
1,361,438	+		Psyr_1203	0.46	-0.9
1,361,438	+		Psyr_1203	0.46	-2.2
1,361,439	-		Psyr_1203	0.46	-1.4
1,361,439	-		Psyr_1203	0.46	+1.7
1,361,439	-		Psyr_1203	0.46	-0.8
1,361,439	-		Psyr_1203	0.46	-0.1
1,361,442	+		Psyr_1203	0.47	+0.0
1,361,443	-		Psyr_1203	0.47	+0.0
1,361,533	-		Psyr_1203	0.57	-1.3
1,361,573	-		Psyr_1203	0.62	+0.0
1,361,635	-		Psyr_1203	0.69	-0.2
1,361,690	+		Psyr_1203	0.75	-2.0
1,361,799	-		Psyr_1203	0.88	-0.5
1,361,799	-		Psyr_1203	0.88	-1.5
1,361,799	-		Psyr_1203	0.88	-0.3
1,361,799	-		Psyr_1203	0.88	-0.9
1,361,799	-		Psyr_1203	0.88	-2.5
1,361,802	+		Psyr_1203	0.88	+1.1
1,361,832	+				+0.7
1,361,885	+				-1.5
1,361,885	+				-1.8
1,361,886	-				-0.0
1,361,886	-				-0.5
1,361,949	-				+1.0
1,361,949	-				-0.1
1,361,949	-				+0.7
1,361,949	-				+2.4
1,361,985	+				-0.2
1,361,985	+				+0.5
1,362,079	+		Psyr_1204	0.11	-1.4
1,362,080	-		Psyr_1204	0.11	+0.1
1,362,198	+		Psyr_1204	0.18	-0.2
1,362,210	+		Psyr_1204	0.18	-0.6
1,362,211	-		Psyr_1204	0.18	+0.3
1,362,211	-		Psyr_1204	0.18	-0.8
1,362,213	+		Psyr_1204	0.18	-1.2
1,362,214	-		Psyr_1204	0.19	+0.0
1,362,310	+		Psyr_1204	0.24	+1.0
1,362,310	+		Psyr_1204	0.24	+1.0
1,362,310	+		Psyr_1204	0.24	-0.8
1,362,311	-		Psyr_1204	0.24	-1.8
1,362,311	-		Psyr_1204	0.24	-0.2
1,362,385	+		Psyr_1204	0.29	+0.7
1,362,385	+		Psyr_1204	0.29	+0.1
1,362,385	+		Psyr_1204	0.29	-1.4
1,362,385	+		Psyr_1204	0.29	+0.4
1,362,385	+		Psyr_1204	0.29	-0.5
1,362,386	-		Psyr_1204	0.29	-1.6
1,362,386	-		Psyr_1204	0.29	-0.4
1,362,386	-		Psyr_1204	0.29	+1.3
1,362,386	-		Psyr_1204	0.29	-0.6
1,362,386	-		Psyr_1204	0.29	-0.2
1,362,386	-		Psyr_1204	0.29	-0.9
1,362,386	-		Psyr_1204	0.29	+1.0
1,362,386	-		Psyr_1204	0.29	+0.5
1,362,419	+		Psyr_1204	0.31	-0.5
1,362,420	-		Psyr_1204	0.31	-0.5
1,362,420	-		Psyr_1204	0.31	+0.2
1,362,420	-		Psyr_1204	0.31	-0.9
1,362,451	+		Psyr_1204	0.32	-0.3
1,362,456	-		Psyr_1204	0.33	+0.7
1,362,575	+		Psyr_1204	0.40	-2.0
1,362,575	+		Psyr_1204	0.40	-0.2
1,362,576	-		Psyr_1204	0.40	-1.1
1,362,576	-		Psyr_1204	0.40	-0.1
1,362,576	-		Psyr_1204	0.40	+1.6
1,362,576	-		Psyr_1204	0.40	-0.3
1,362,628	+		Psyr_1204	0.43	-0.5
1,362,629	-		Psyr_1204	0.43	+0.2
1,362,639	-		Psyr_1204	0.43	-0.8
1,362,715	+		Psyr_1204	0.48	-1.0
1,362,715	+		Psyr_1204	0.48	-0.6
1,362,715	+		Psyr_1204	0.48	-0.6
1,362,716	-		Psyr_1204	0.48	+0.2
1,362,716	-		Psyr_1204	0.48	-0.3
1,362,716	-		Psyr_1204	0.48	+0.0
1,362,716	-		Psyr_1204	0.48	-0.2
1,362,721	+		Psyr_1204	0.48	+0.0
1,362,721	+		Psyr_1204	0.48	-0.8
1,362,721	+		Psyr_1204	0.48	-0.5
1,362,721	+		Psyr_1204	0.48	-0.4
1,362,721	+		Psyr_1204	0.48	+0.0
1,362,722	-		Psyr_1204	0.48	-0.0
1,362,722	-		Psyr_1204	0.48	-0.1
1,362,722	-		Psyr_1204	0.48	-0.3
1,362,722	-		Psyr_1204	0.48	+0.3
1,362,722	-		Psyr_1204	0.48	+0.1
1,362,722	-		Psyr_1204	0.48	-1.5
1,362,722	-		Psyr_1204	0.48	-0.2
1,362,722	-		Psyr_1204	0.48	+0.7
1,362,761	+		Psyr_1204	0.51	-0.2
1,362,761	+		Psyr_1204	0.51	-0.7
1,362,761	+		Psyr_1204	0.51	-1.2
1,362,762	-		Psyr_1204	0.51	-0.7
1,362,762	-		Psyr_1204	0.51	-0.8
1,362,865	+		Psyr_1204	0.57	-0.6
1,362,865	+		Psyr_1204	0.57	-1.2
1,362,987	+		Psyr_1204	0.64	+0.2
1,362,988	-		Psyr_1204	0.64	-0.3
1,362,988	-		Psyr_1204	0.64	-0.3
1,363,008	+		Psyr_1204	0.65	+0.7
1,363,008	+		Psyr_1204	0.65	-1.0
1,363,008	+		Psyr_1204	0.65	+0.8
1,363,099	+		Psyr_1204	0.70	-2.0
1,363,099	+		Psyr_1204	0.70	+0.0
1,363,099	+		Psyr_1204	0.70	-0.4
1,363,100	-		Psyr_1204	0.71	-2.2
1,363,100	-		Psyr_1204	0.71	+0.2
1,363,113	+		Psyr_1204	0.71	-0.1
1,363,114	-		Psyr_1204	0.71	-0.2
1,363,114	-		Psyr_1204	0.71	+0.8
1,363,114	-		Psyr_1204	0.71	+0.1
1,363,215	-		Psyr_1204	0.77	-3.0
1,363,215	-		Psyr_1204	0.77	-0.2
1,363,216	+		Psyr_1204	0.77	-1.3
1,363,217	-		Psyr_1204	0.77	-1.2
1,363,243	-		Psyr_1204	0.79	-0.2
1,363,323	-		Psyr_1204	0.84	+0.3
1,363,417	-		Psyr_1204	0.89	-0.8
1,363,456	-				-0.5
1,363,456	-				-0.4
1,363,456	-				+0.4
1,363,456	-				-2.1
1,363,483	+				-2.0
1,363,484	-				-0.7
1,363,510	+				-1.8
1,363,513	+				-0.9
1,363,514	-				-0.8
1,363,514	-				-0.7
1,363,514	-				-0.9
1,363,536	+				-1.5
1,363,566	-				-1.3
1,363,605	+				+0.6
1,363,606	-				+0.1
1,363,606	-				-0.8
1,363,632	-				-0.3
1,363,647	-				-0.5
1,363,658	+				-0.4
1,363,711	-				-0.1
1,363,711	-				+0.5
1,363,711	-				-0.4
1,363,713	-				-0.2
1,363,713	-				-0.5
1,363,713	-				+1.0
1,363,728	+				+0.7
1,363,758	+				-1.2
1,363,759	-				-0.4
1,363,785	+				-1.7
1,363,799	-				-0.8
1,363,854	+				-0.2
1,363,855	-				-2.4
1,363,897	-				-0.9
1,363,897	-				-1.1
1,363,922	+				-0.6
1,363,923	-				-1.9
1,363,925	+				+0.1
1,363,925	+				+0.5
1,363,925	+				+0.5
1,363,941	+				-0.2
1,363,942	-				-1.3
1,364,043	+				-1.2
1,364,049	-				-1.0
1,364,087	+				-0.2
1,364,095	+				-2.4
1,364,095	+				-0.3
1,364,095	+				+0.6
1,364,096	-				+0.4
1,364,096	-				-1.7
1,364,096	-				-0.7
1,364,096	-				+0.2
1,364,096	-				-0.3
1,364,096	-				-1.5
1,364,096	-				+0.5
1,364,096	-				-0.8
1,364,126	+				+0.0
1,364,126	+				-0.4
1,364,197	+				+0.6
1,364,197	+				-0.9
1,364,197	+				-1.8
1,364,197	+				+0.5
1,364,198	-				+0.0
1,364,198	-				-1.1
1,364,198	-				-1.0
1,364,198	-				-0.2
1,364,235	-				+1.0
1,364,236	+				+0.4
1,364,236	+				-1.7
1,364,236	+				+0.3
1,364,236	+				+0.7
1,364,236	+				+1.0
1,364,237	-				+0.0
1,364,237	-				+0.0
1,364,237	-				-0.3
1,364,237	-				-0.2
1,364,237	-				+1.0
1,364,392	+		Psyr_1205	0.24	+1.3
1,364,392	+		Psyr_1205	0.24	-0.8
1,364,393	-		Psyr_1205	0.24	-0.3
1,364,393	-		Psyr_1205	0.24	+0.8
1,364,393	-		Psyr_1205	0.24	-0.5
1,364,393	-		Psyr_1205	0.24	-0.5
1,364,393	-		Psyr_1205	0.24	+0.8
1,364,393	-		Psyr_1205	0.24	+0.3
1,364,408	-		Psyr_1205	0.25	+0.6
1,364,542	+		Psyr_1205	0.38	+0.3
1,364,543	-		Psyr_1205	0.38	-0.7
1,364,543	-		Psyr_1205	0.38	-1.2
1,364,543	-		Psyr_1205	0.38	+0.5
1,364,593	+		Psyr_1205	0.43	-0.8
1,364,593	+		Psyr_1205	0.43	+0.8
1,364,593	+		Psyr_1205	0.43	-0.1
1,364,594	-		Psyr_1205	0.43	-0.2
1,364,594	-		Psyr_1205	0.43	-0.5
1,364,594	-		Psyr_1205	0.43	-0.8