Experiment: carbon source Sucrose 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5920 and Pf1N1B4_5921 are separated by 216 nucleotides Pf1N1B4_5921 and Pf1N1B4_5922 are separated by 164 nucleotides
Pf1N1B4_5920 - Transcriptional regulator, AraC family, at 363,983 to 364,933
_5920
Pf1N1B4_5921 - Pirin, at 365,150 to 365,872
_5921
Pf1N1B4_5922 - ABC transporter ATP-binding protein, at 366,037 to 367,848
_5922
Position (kb) 365
366 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 364.207 kb on + strand, within Pf1N1B4_5920 at 364.488 kb on + strand at 364.489 kb on - strand, within Pf1N1B4_5920 at 364.489 kb on - strand at 364.489 kb on - strand, within Pf1N1B4_5920 at 364.545 kb on + strand, within Pf1N1B4_5920 at 364.546 kb on - strand, within Pf1N1B4_5920 at 364.689 kb on + strand, within Pf1N1B4_5920 at 364.689 kb on + strand, within Pf1N1B4_5920 at 364.690 kb on - strand, within Pf1N1B4_5920 at 364.971 kb on - strand at 365.004 kb on + strand at 365.016 kb on + strand at 365.017 kb on - strand at 365.017 kb on - strand at 365.078 kb on + strand at 365.164 kb on + strand at 365.215 kb on + strand at 365.215 kb on + strand at 365.348 kb on + strand, within Pf1N1B4_5921 at 365.348 kb on + strand, within Pf1N1B4_5921 at 365.349 kb on - strand, within Pf1N1B4_5921 at 365.452 kb on + strand, within Pf1N1B4_5921 at 365.625 kb on + strand, within Pf1N1B4_5921 at 365.626 kb on - strand, within Pf1N1B4_5921 at 365.626 kb on - strand, within Pf1N1B4_5921 at 365.643 kb on + strand, within Pf1N1B4_5921 at 365.643 kb on + strand at 365.646 kb on - strand, within Pf1N1B4_5921 at 365.646 kb on - strand, within Pf1N1B4_5921 at 365.702 kb on + strand, within Pf1N1B4_5921 at 365.708 kb on + strand, within Pf1N1B4_5921 at 365.708 kb on + strand, within Pf1N1B4_5921 at 365.708 kb on + strand, within Pf1N1B4_5921 at 365.709 kb on - strand, within Pf1N1B4_5921 at 365.709 kb on - strand, within Pf1N1B4_5921 at 366.311 kb on + strand, within Pf1N1B4_5922 at 366.311 kb on + strand, within Pf1N1B4_5922 at 366.311 kb on + strand, within Pf1N1B4_5922 at 366.311 kb on + strand, within Pf1N1B4_5922 at 366.312 kb on - strand, within Pf1N1B4_5922 at 366.312 kb on - strand, within Pf1N1B4_5922 at 366.312 kb on - strand, within Pf1N1B4_5922 at 366.312 kb on - strand, within Pf1N1B4_5922 at 366.383 kb on - strand, within Pf1N1B4_5922 at 366.484 kb on - strand, within Pf1N1B4_5922 at 366.484 kb on - strand, within Pf1N1B4_5922 at 366.530 kb on + strand, within Pf1N1B4_5922 at 366.531 kb on - strand, within Pf1N1B4_5922 at 366.531 kb on - strand, within Pf1N1B4_5922 at 366.609 kb on + strand, within Pf1N1B4_5922 at 366.610 kb on - strand, within Pf1N1B4_5922 at 366.848 kb on + strand, within Pf1N1B4_5922 at 366.849 kb on - strand, within Pf1N1B4_5922
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 0.5mM remove 364,207 + Pf1N1B4_5920 0.24 +1.2 364,488 + -1.5 364,489 - Pf1N1B4_5920 0.53 +1.4 364,489 - +0.9 364,489 - Pf1N1B4_5920 0.53 +2.1 364,545 + Pf1N1B4_5920 0.59 +0.7 364,546 - Pf1N1B4_5920 0.59 -0.6 364,689 + Pf1N1B4_5920 0.74 -0.2 364,689 + Pf1N1B4_5920 0.74 +1.5 364,690 - Pf1N1B4_5920 0.74 -2.0 364,971 - -1.0 365,004 + -1.2 365,016 + -0.5 365,017 - +3.4 365,017 - -0.7 365,078 + +2.7 365,164 + -1.7 365,215 + +1.6 365,215 + -2.0 365,348 + Pf1N1B4_5921 0.27 -1.3 365,348 + Pf1N1B4_5921 0.27 +0.2 365,349 - Pf1N1B4_5921 0.28 -1.3 365,452 + Pf1N1B4_5921 0.42 +2.1 365,625 + Pf1N1B4_5921 0.66 -0.3 365,626 - Pf1N1B4_5921 0.66 +2.3 365,626 - Pf1N1B4_5921 0.66 +1.1 365,643 + Pf1N1B4_5921 0.68 +2.2 365,643 + -1.2 365,646 - Pf1N1B4_5921 0.69 +2.9 365,646 - Pf1N1B4_5921 0.69 -1.9 365,702 + Pf1N1B4_5921 0.76 +2.9 365,708 + Pf1N1B4_5921 0.77 -0.2 365,708 + Pf1N1B4_5921 0.77 +0.6 365,708 + Pf1N1B4_5921 0.77 -1.2 365,709 - Pf1N1B4_5921 0.77 +1.8 365,709 - Pf1N1B4_5921 0.77 -0.9 366,311 + Pf1N1B4_5922 0.15 +1.2 366,311 + Pf1N1B4_5922 0.15 -0.5 366,311 + Pf1N1B4_5922 0.15 -3.0 366,311 + Pf1N1B4_5922 0.15 -1.1 366,312 - Pf1N1B4_5922 0.15 -0.1 366,312 - Pf1N1B4_5922 0.15 +0.1 366,312 - Pf1N1B4_5922 0.15 -2.2 366,312 - Pf1N1B4_5922 0.15 -2.3 366,383 - Pf1N1B4_5922 0.19 -2.3 366,484 - Pf1N1B4_5922 0.25 -0.6 366,484 - Pf1N1B4_5922 0.25 -0.5 366,530 + Pf1N1B4_5922 0.27 -1.9 366,531 - Pf1N1B4_5922 0.27 +0.7 366,531 - Pf1N1B4_5922 0.27 -1.5 366,609 + Pf1N1B4_5922 0.32 +2.1 366,610 - Pf1N1B4_5922 0.32 -3.5 366,848 + Pf1N1B4_5922 0.45 -2.6 366,849 - Pf1N1B4_5922 0.45 -0.2
Or see this region's nucleotide sequence