Experiment: carbon source Sucrose 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_435 and Pf1N1B4_436 are separated by 524 nucleotides Pf1N1B4_436 and Pf1N1B4_437 are separated by 264 nucleotides
Pf1N1B4_435 - hypothetical protein APECO1_2271, at 513,765 to 514,730
_435
Pf1N1B4_436 - Cell division protein FtsH (EC 3.4.24.-), at 515,255 to 516,193
_436
Pf1N1B4_437 - hypothetical protein, at 516,458 to 516,589
_437
Position (kb) 515
516
517 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 514.271 kb on + strand, within Pf1N1B4_435 at 514.306 kb on + strand, within Pf1N1B4_435 at 514.441 kb on + strand, within Pf1N1B4_435 at 514.454 kb on + strand, within Pf1N1B4_435 at 514.455 kb on - strand, within Pf1N1B4_435 at 514.455 kb on - strand, within Pf1N1B4_435 at 514.455 kb on - strand, within Pf1N1B4_435 at 514.458 kb on + strand at 514.458 kb on + strand, within Pf1N1B4_435 at 514.458 kb on + strand, within Pf1N1B4_435 at 514.458 kb on + strand, within Pf1N1B4_435 at 514.458 kb on + strand, within Pf1N1B4_435 at 514.458 kb on + strand, within Pf1N1B4_435 at 514.459 kb on - strand, within Pf1N1B4_435 at 514.459 kb on - strand, within Pf1N1B4_435 at 514.459 kb on - strand, within Pf1N1B4_435 at 514.459 kb on - strand, within Pf1N1B4_435 at 514.502 kb on + strand, within Pf1N1B4_435 at 514.502 kb on + strand, within Pf1N1B4_435 at 514.503 kb on - strand, within Pf1N1B4_435 at 514.503 kb on - strand, within Pf1N1B4_435 at 514.506 kb on + strand, within Pf1N1B4_435 at 514.506 kb on + strand, within Pf1N1B4_435 at 514.506 kb on + strand, within Pf1N1B4_435 at 514.506 kb on + strand, within Pf1N1B4_435 at 514.506 kb on + strand at 514.506 kb on + strand, within Pf1N1B4_435 at 514.506 kb on + strand, within Pf1N1B4_435 at 514.506 kb on + strand, within Pf1N1B4_435 at 514.506 kb on + strand, within Pf1N1B4_435 at 514.506 kb on + strand, within Pf1N1B4_435 at 514.507 kb on - strand, within Pf1N1B4_435 at 514.507 kb on - strand, within Pf1N1B4_435 at 514.507 kb on - strand, within Pf1N1B4_435 at 514.507 kb on - strand, within Pf1N1B4_435 at 514.507 kb on - strand, within Pf1N1B4_435 at 514.507 kb on - strand, within Pf1N1B4_435 at 514.507 kb on - strand, within Pf1N1B4_435 at 514.507 kb on - strand, within Pf1N1B4_435 at 514.528 kb on + strand, within Pf1N1B4_435 at 514.528 kb on + strand, within Pf1N1B4_435 at 514.528 kb on + strand, within Pf1N1B4_435 at 514.528 kb on + strand, within Pf1N1B4_435 at 514.528 kb on + strand, within Pf1N1B4_435 at 514.529 kb on - strand, within Pf1N1B4_435 at 514.529 kb on - strand, within Pf1N1B4_435 at 514.579 kb on + strand, within Pf1N1B4_435 at 514.579 kb on + strand, within Pf1N1B4_435 at 514.579 kb on + strand, within Pf1N1B4_435 at 514.579 kb on + strand, within Pf1N1B4_435 at 514.580 kb on - strand at 514.580 kb on - strand, within Pf1N1B4_435 at 514.580 kb on - strand at 514.662 kb on + strand at 514.662 kb on + strand at 514.663 kb on - strand at 514.663 kb on - strand at 514.681 kb on + strand at 514.681 kb on + strand at 514.681 kb on + strand at 514.681 kb on + strand at 514.681 kb on + strand at 514.681 kb on + strand at 514.681 kb on + strand at 514.682 kb on - strand at 514.739 kb on + strand at 514.739 kb on + strand at 514.739 kb on + strand at 514.739 kb on + strand at 514.739 kb on + strand at 514.739 kb on + strand at 514.739 kb on + strand at 514.739 kb on + strand at 514.740 kb on - strand at 514.740 kb on - strand at 514.740 kb on - strand at 514.740 kb on - strand at 514.740 kb on - strand at 514.740 kb on - strand at 514.740 kb on - strand at 514.749 kb on + strand at 514.749 kb on + strand at 514.750 kb on - strand at 514.750 kb on - strand at 514.755 kb on + strand at 514.755 kb on + strand at 514.755 kb on + strand at 514.756 kb on - strand at 514.756 kb on - strand at 514.756 kb on - strand at 514.757 kb on + strand at 514.757 kb on + strand at 514.757 kb on + strand at 514.758 kb on - strand at 514.758 kb on - strand at 514.781 kb on + strand at 514.782 kb on - strand at 514.782 kb on - strand at 514.802 kb on + strand at 514.802 kb on + strand at 514.802 kb on + strand at 514.802 kb on + strand at 514.803 kb on - strand at 514.894 kb on + strand at 514.980 kb on + strand at 514.980 kb on + strand at 515.049 kb on - strand at 515.067 kb on + strand at 515.073 kb on + strand at 515.073 kb on + strand at 515.073 kb on + strand at 515.082 kb on + strand at 515.083 kb on - strand at 515.083 kb on - strand at 515.083 kb on - strand at 515.083 kb on - strand at 515.084 kb on + strand at 515.084 kb on + strand at 515.084 kb on + strand at 515.085 kb on - strand at 515.156 kb on + strand at 515.205 kb on + strand at 515.205 kb on + strand at 515.205 kb on + strand at 515.205 kb on + strand at 515.206 kb on - strand at 515.242 kb on + strand at 515.254 kb on - strand at 515.254 kb on - strand at 515.254 kb on - strand at 515.260 kb on + strand at 515.260 kb on + strand at 515.261 kb on - strand at 515.264 kb on - strand at 515.264 kb on - strand at 515.269 kb on + strand at 515.269 kb on + strand at 515.270 kb on - strand at 515.270 kb on - strand at 515.270 kb on - strand at 515.270 kb on - strand at 515.270 kb on - strand at 515.304 kb on - strand at 515.343 kb on + strand at 515.343 kb on + strand at 515.343 kb on + strand at 515.343 kb on + strand at 515.344 kb on - strand at 515.344 kb on - strand at 515.344 kb on - strand at 515.344 kb on - strand at 515.389 kb on - strand, within Pf1N1B4_436 at 515.437 kb on + strand, within Pf1N1B4_436 at 515.464 kb on - strand, within Pf1N1B4_436 at 515.464 kb on - strand, within Pf1N1B4_436 at 515.466 kb on + strand, within Pf1N1B4_436 at 515.467 kb on - strand at 515.635 kb on + strand, within Pf1N1B4_436 at 515.654 kb on + strand, within Pf1N1B4_436 at 515.655 kb on - strand, within Pf1N1B4_436 at 515.892 kb on + strand, within Pf1N1B4_436 at 515.892 kb on + strand, within Pf1N1B4_436 at 515.893 kb on - strand, within Pf1N1B4_436 at 515.917 kb on + strand, within Pf1N1B4_436 at 515.917 kb on + strand, within Pf1N1B4_436 at 515.917 kb on + strand, within Pf1N1B4_436 at 515.917 kb on + strand, within Pf1N1B4_436 at 515.918 kb on - strand, within Pf1N1B4_436 at 515.918 kb on - strand, within Pf1N1B4_436 at 515.918 kb on - strand, within Pf1N1B4_436 at 515.918 kb on - strand, within Pf1N1B4_436 at 515.951 kb on + strand, within Pf1N1B4_436 at 515.975 kb on - strand, within Pf1N1B4_436 at 516.029 kb on - strand, within Pf1N1B4_436 at 516.029 kb on - strand, within Pf1N1B4_436 at 516.029 kb on - strand, within Pf1N1B4_436 at 516.090 kb on + strand, within Pf1N1B4_436 at 516.090 kb on + strand, within Pf1N1B4_436 at 516.129 kb on + strand at 516.242 kb on - strand at 516.315 kb on + strand at 516.316 kb on - strand at 516.410 kb on + strand at 516.411 kb on - strand at 516.415 kb on - strand at 516.514 kb on + strand, within Pf1N1B4_437 at 516.514 kb on + strand, within Pf1N1B4_437 at 516.542 kb on + strand, within Pf1N1B4_437 at 516.542 kb on + strand, within Pf1N1B4_437 at 516.543 kb on - strand, within Pf1N1B4_437 at 516.543 kb on - strand, within Pf1N1B4_437 at 516.543 kb on - strand, within Pf1N1B4_437 at 516.563 kb on + strand, within Pf1N1B4_437 at 516.564 kb on - strand, within Pf1N1B4_437 at 516.564 kb on - strand, within Pf1N1B4_437 at 516.564 kb on - strand, within Pf1N1B4_437 at 516.564 kb on - strand, within Pf1N1B4_437 at 516.602 kb on + strand at 516.602 kb on + strand at 516.603 kb on - strand at 516.603 kb on - strand at 516.603 kb on - strand at 516.603 kb on - strand at 516.604 kb on + strand at 516.794 kb on - strand at 516.897 kb on + strand at 516.959 kb on + strand at 517.077 kb on + strand at 517.079 kb on + strand at 517.079 kb on + strand at 517.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 0.5mM remove 514,271 + Pf1N1B4_435 0.52 -1.5 514,306 + Pf1N1B4_435 0.56 +1.5 514,441 + Pf1N1B4_435 0.70 -2.3 514,454 + Pf1N1B4_435 0.71 -0.0 514,455 - Pf1N1B4_435 0.71 -0.5 514,455 - Pf1N1B4_435 0.71 -1.1 514,455 - Pf1N1B4_435 0.71 +0.4 514,458 + -1.9 514,458 + Pf1N1B4_435 0.72 +1.8 514,458 + Pf1N1B4_435 0.72 +2.0 514,458 + Pf1N1B4_435 0.72 -2.2 514,458 + Pf1N1B4_435 0.72 -0.1 514,458 + Pf1N1B4_435 0.72 -2.0 514,459 - Pf1N1B4_435 0.72 +0.0 514,459 - Pf1N1B4_435 0.72 -0.5 514,459 - Pf1N1B4_435 0.72 +1.2 514,459 - Pf1N1B4_435 0.72 -1.6 514,502 + Pf1N1B4_435 0.76 -1.3 514,502 + Pf1N1B4_435 0.76 -2.4 514,503 - Pf1N1B4_435 0.76 -1.2 514,503 - Pf1N1B4_435 0.76 -2.8 514,506 + Pf1N1B4_435 0.77 -1.6 514,506 + Pf1N1B4_435 0.77 -1.9 514,506 + Pf1N1B4_435 0.77 -3.1 514,506 + Pf1N1B4_435 0.77 +1.2 514,506 + -1.6 514,506 + Pf1N1B4_435 0.77 +0.2 514,506 + Pf1N1B4_435 0.77 -1.0 514,506 + Pf1N1B4_435 0.77 -1.5 514,506 + Pf1N1B4_435 0.77 -0.3 514,506 + Pf1N1B4_435 0.77 -0.6 514,507 - Pf1N1B4_435 0.77 -2.9 514,507 - Pf1N1B4_435 0.77 -3.8 514,507 - Pf1N1B4_435 0.77 +1.4 514,507 - Pf1N1B4_435 0.77 -2.3 514,507 - Pf1N1B4_435 0.77 +2.0 514,507 - Pf1N1B4_435 0.77 +0.5 514,507 - Pf1N1B4_435 0.77 +0.4 514,507 - Pf1N1B4_435 0.77 +1.7 514,528 + Pf1N1B4_435 0.79 +1.0 514,528 + Pf1N1B4_435 0.79 -0.1 514,528 + Pf1N1B4_435 0.79 -2.4 514,528 + Pf1N1B4_435 0.79 +1.0 514,528 + Pf1N1B4_435 0.79 -1.0 514,529 - Pf1N1B4_435 0.79 +0.1 514,529 - Pf1N1B4_435 0.79 +1.8 514,579 + Pf1N1B4_435 0.84 -1.1 514,579 + Pf1N1B4_435 0.84 -1.6 514,579 + Pf1N1B4_435 0.84 +1.1 514,579 + Pf1N1B4_435 0.84 -2.2 514,580 - +1.4 514,580 - Pf1N1B4_435 0.84 -0.8 514,580 - +0.0 514,662 + -0.1 514,662 + -1.0 514,663 - -0.2 514,663 - -2.2 514,681 + -2.4 514,681 + +1.2 514,681 + +2.4 514,681 + +1.2 514,681 + +0.5 514,681 + -1.5 514,681 + -0.1 514,682 - -0.1 514,739 + -0.6 514,739 + -0.1 514,739 + -0.4 514,739 + -2.0 514,739 + -0.2 514,739 + -0.5 514,739 + +1.4 514,739 + +0.5 514,740 - -2.9 514,740 - +2.9 514,740 - -1.1 514,740 - +0.0 514,740 - -1.0 514,740 - +2.5 514,740 - +0.9 514,749 + -1.0 514,749 + +0.0 514,750 - -0.7 514,750 - -1.1 514,755 + +0.2 514,755 + +2.1 514,755 + -1.7 514,756 - +1.8 514,756 - -1.6 514,756 - +1.4 514,757 + +0.5 514,757 + -2.6 514,757 + -1.4 514,758 - +0.3 514,758 - -1.1 514,781 + -0.5 514,782 - -1.1 514,782 - -2.3 514,802 + +1.8 514,802 + -2.6 514,802 + +1.3 514,802 + -0.0 514,803 - -2.2 514,894 + -2.8 514,980 + -0.1 514,980 + -1.0 515,049 - +0.3 515,067 + -1.3 515,073 + -2.9 515,073 + -0.6 515,073 + -1.2 515,082 + -1.1 515,083 - -0.3 515,083 - -0.8 515,083 - -0.9 515,083 - -1.7 515,084 + -2.6 515,084 + +1.5 515,084 + -0.2 515,085 - +3.3 515,156 + -0.4 515,205 + -1.6 515,205 + -1.1 515,205 + +0.5 515,205 + -3.0 515,206 - -0.6 515,242 + -0.2 515,254 - -1.8 515,254 - +1.0 515,254 - +0.4 515,260 + -0.2 515,260 + +1.1 515,261 - +2.4 515,264 - -1.2 515,264 - +3.4 515,269 + +2.7 515,269 + -2.1 515,270 - -0.8 515,270 - -1.6 515,270 - -1.6 515,270 - -1.6 515,270 - +1.3 515,304 - +1.9 515,343 + -2.3 515,343 + +0.7 515,343 + +0.1 515,343 + +1.9 515,344 - -0.9 515,344 - -1.6 515,344 - -1.6 515,344 - +1.2 515,389 - Pf1N1B4_436 0.14 -2.5 515,437 + Pf1N1B4_436 0.19 -2.6 515,464 - Pf1N1B4_436 0.22 +1.5 515,464 - Pf1N1B4_436 0.22 -0.9 515,466 + Pf1N1B4_436 0.22 +0.7 515,467 - +2.4 515,635 + Pf1N1B4_436 0.40 +0.9 515,654 + Pf1N1B4_436 0.42 -1.6 515,655 - Pf1N1B4_436 0.43 +1.0 515,892 + Pf1N1B4_436 0.68 -0.7 515,892 + Pf1N1B4_436 0.68 -2.5 515,893 - Pf1N1B4_436 0.68 +0.4 515,917 + Pf1N1B4_436 0.71 -2.4 515,917 + Pf1N1B4_436 0.71 -0.4 515,917 + Pf1N1B4_436 0.71 -2.0 515,917 + Pf1N1B4_436 0.71 +2.7 515,918 - Pf1N1B4_436 0.71 -2.3 515,918 - Pf1N1B4_436 0.71 -2.8 515,918 - Pf1N1B4_436 0.71 +0.9 515,918 - Pf1N1B4_436 0.71 -1.8 515,951 + Pf1N1B4_436 0.74 -0.3 515,975 - Pf1N1B4_436 0.77 +2.2 516,029 - Pf1N1B4_436 0.82 -2.0 516,029 - Pf1N1B4_436 0.82 +0.9 516,029 - Pf1N1B4_436 0.82 +0.0 516,090 + Pf1N1B4_436 0.89 +0.9 516,090 + Pf1N1B4_436 0.89 +0.7 516,129 + -3.5 516,242 - -2.8 516,315 + -0.6 516,316 - +0.0 516,410 + -0.9 516,411 - -0.2 516,415 - +1.2 516,514 + Pf1N1B4_437 0.42 -1.6 516,514 + Pf1N1B4_437 0.42 +2.4 516,542 + Pf1N1B4_437 0.64 -1.6 516,542 + Pf1N1B4_437 0.64 -0.8 516,543 - Pf1N1B4_437 0.64 -2.3 516,543 - Pf1N1B4_437 0.64 -0.5 516,543 - Pf1N1B4_437 0.64 +1.0 516,563 + Pf1N1B4_437 0.80 -1.9 516,564 - Pf1N1B4_437 0.80 +1.4 516,564 - Pf1N1B4_437 0.80 -1.8 516,564 - Pf1N1B4_437 0.80 +0.3 516,564 - Pf1N1B4_437 0.80 +0.6 516,602 + -2.2 516,602 + -1.7 516,603 - -0.2 516,603 - +2.4 516,603 - -1.3 516,603 - -1.2 516,604 + -1.3 516,794 - +0.8 516,897 + +1.0 516,959 + +0.5 517,077 + -1.9 517,079 + -0.8 517,079 + +0.3 517,183 - +2.2
Or see this region's nucleotide sequence