Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2895

Experiment: carbon source Sucrose 0.5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source Sucrose 0.5mM
3,247,438	+		Pf1N1B4_2893	0.59	-1.7
3,247,438	+		Pf1N1B4_2893	0.59	-1.9
3,247,438	+		Pf1N1B4_2893	0.59	-2.3
3,247,438	+		Pf1N1B4_2893	0.59	-2.0
3,247,438	+		Pf1N1B4_2893	0.59	-3.0
3,247,438	+		Pf1N1B4_2893	0.59	-4.3
3,247,439	-		Pf1N1B4_2893	0.59	-3.7
3,247,439	-		Pf1N1B4_2893	0.59	-2.0
3,247,439	-		Pf1N1B4_2893	0.59	-0.5
3,247,439	-		Pf1N1B4_2893	0.59	-1.3
3,247,439	-		Pf1N1B4_2893	0.59	-2.3
3,247,439	-		Pf1N1B4_2893	0.59	-1.5
3,247,441	+		Pf1N1B4_2893	0.59	-0.3
3,247,441	+		Pf1N1B4_2893	0.59	-0.6
3,247,442	-		Pf1N1B4_2893	0.59	-2.1
3,247,542	+		Pf1N1B4_2893	0.75	-2.1
3,247,542	+		Pf1N1B4_2893	0.75	-1.1
3,247,603	+		Pf1N1B4_2893	0.84	-2.8
3,247,603	+		Pf1N1B4_2893	0.84	-4.1
3,247,603	+				-1.2
3,247,603	+		Pf1N1B4_2893	0.84	-0.4
3,247,604	-		Pf1N1B4_2893	0.84	-2.1
3,247,604	-		Pf1N1B4_2893	0.84	-2.1
3,247,604	-		Pf1N1B4_2893	0.84	-3.6
3,247,676	-				-1.9
3,247,676	-				-1.5
3,247,702	+				-0.1
3,247,702	+				-2.6
3,247,702	+				-2.3
3,247,702	+				-2.0
3,247,702	+				+0.8
3,247,703	-				-2.3
3,247,703	-				-2.9
3,247,703	-				+0.8
3,247,703	-				-0.0
3,247,703	-				-1.7
3,247,983	+		Pf1N1B4_2894	0.52	+0.7
3,247,984	-		Pf1N1B4_2894	0.52	-0.2
3,247,984	-		Pf1N1B4_2894	0.52	-1.3
3,248,121	+		Pf1N1B4_2894	0.78	-3.2
3,248,121	+		Pf1N1B4_2894	0.78	-0.8
3,248,121	+		Pf1N1B4_2894	0.78	-1.3
3,248,121	+		Pf1N1B4_2894	0.78	+1.4
3,248,122	-		Pf1N1B4_2894	0.78	+0.3
3,248,174	+		Pf1N1B4_2894	0.88	-2.2
3,248,184	+				-2.1
3,248,184	+				-1.4
3,248,185	-				+1.1
3,248,185	-				-0.9
3,248,236	+				-0.7
3,248,236	+				+3.9
3,248,260	+				+0.1
3,248,260	+				-0.1
3,248,273	+				-2.5
3,248,305	+				+2.9
3,248,305	+				+0.9
3,248,305	+				-2.0
3,248,305	+				+2.5
3,248,305	+				-1.5
3,248,306	-				-0.7
3,248,306	-				+2.0
3,248,340	+				-2.0
3,248,350	+				-3.0
3,248,351	-				+1.3
3,248,417	+				-2.1
3,248,417	+				+2.9
3,248,417	+				-1.5
3,248,417	+				+1.5
3,248,417	+				+0.7
3,248,418	-				-0.5
3,248,546	+		Pf1N1B4_2895	0.11	+0.9
3,248,546	+		Pf1N1B4_2895	0.11	-1.3
3,248,546	+		Pf1N1B4_2895	0.11	+1.0
3,248,546	+		Pf1N1B4_2895	0.11	-2.5
3,248,547	-		Pf1N1B4_2895	0.11	+2.8
3,248,547	-		Pf1N1B4_2895	0.11	-1.8
3,248,547	-		Pf1N1B4_2895	0.11	+0.3
3,248,547	-		Pf1N1B4_2895	0.11	-0.6
3,248,547	-		Pf1N1B4_2895	0.11	+1.3
3,248,547	-				-0.8
3,248,596	-		Pf1N1B4_2895	0.15	-1.1
3,248,732	+		Pf1N1B4_2895	0.27	-2.5
3,248,733	-		Pf1N1B4_2895	0.27	+1.3
3,248,733	-				-0.1
3,248,733	-		Pf1N1B4_2895	0.27	-2.3
3,248,733	-		Pf1N1B4_2895	0.27	+2.0
3,248,733	-		Pf1N1B4_2895	0.27	+0.2
3,248,733	-		Pf1N1B4_2895	0.27	-1.3
3,248,753	+		Pf1N1B4_2895	0.29	-0.5
3,248,762	+		Pf1N1B4_2895	0.29	+2.1
3,248,762	+		Pf1N1B4_2895	0.29	-1.3
3,248,762	+		Pf1N1B4_2895	0.29	-1.4
3,248,762	+		Pf1N1B4_2895	0.29	+1.6
3,248,762	+		Pf1N1B4_2895	0.29	-0.4
3,248,762	+		Pf1N1B4_2895	0.29	-0.8
3,248,763	-				-0.7
3,248,763	-		Pf1N1B4_2895	0.30	-0.1
3,248,763	-		Pf1N1B4_2895	0.30	-0.8
3,248,763	-		Pf1N1B4_2895	0.30	+1.6
3,248,792	-		Pf1N1B4_2895	0.32	-2.7
3,248,852	+		Pf1N1B4_2895	0.37	-1.5
3,248,871	+		Pf1N1B4_2895	0.39	-1.1
3,248,871	+		Pf1N1B4_2895	0.39	-0.7
3,248,871	+		Pf1N1B4_2895	0.39	-2.2
3,248,872	-		Pf1N1B4_2895	0.39	+1.1
3,248,872	-		Pf1N1B4_2895	0.39	+1.3
3,248,872	-		Pf1N1B4_2895	0.39	+2.2
3,248,872	-		Pf1N1B4_2895	0.39	-0.5
3,248,872	-		Pf1N1B4_2895	0.39	-0.1
3,248,875	+		Pf1N1B4_2895	0.39	+0.7
3,248,955	-		Pf1N1B4_2895	0.46	-0.6
3,248,955	-		Pf1N1B4_2895	0.46	+0.3
3,248,955	-		Pf1N1B4_2895	0.46	+1.0
3,248,966	+		Pf1N1B4_2895	0.47	-3.2
3,248,966	+		Pf1N1B4_2895	0.47	-1.6
3,248,966	+				+4.0
3,248,967	-		Pf1N1B4_2895	0.47	-2.1
3,248,967	-		Pf1N1B4_2895	0.47	+2.3
3,248,972	+		Pf1N1B4_2895	0.47	-1.9
3,248,972	+		Pf1N1B4_2895	0.47	-1.2
3,248,972	+		Pf1N1B4_2895	0.47	+0.6
3,248,973	-		Pf1N1B4_2895	0.47	-2.0
3,248,973	-				+1.5
3,249,119	+		Pf1N1B4_2895	0.60	+0.2
3,249,143	+		Pf1N1B4_2895	0.62	+0.4
3,249,143	+		Pf1N1B4_2895	0.62	-0.7
3,249,215	+		Pf1N1B4_2895	0.68	+1.1
3,249,223	-		Pf1N1B4_2895	0.69	+0.2
3,249,223	-				-1.2
3,249,223	-		Pf1N1B4_2895	0.69	-1.2
3,249,224	+		Pf1N1B4_2895	0.69	-0.1
3,249,224	+		Pf1N1B4_2895	0.69	+0.8
3,249,224	+		Pf1N1B4_2895	0.69	-0.1
3,249,224	+		Pf1N1B4_2895	0.69	+0.8
3,249,225	-		Pf1N1B4_2895	0.69	-3.0
3,249,225	-		Pf1N1B4_2895	0.69	+0.2
3,249,267	-		Pf1N1B4_2895	0.72	+0.9
3,249,312	-		Pf1N1B4_2895	0.76	+0.8
3,249,334	-		Pf1N1B4_2895	0.78	+0.5
3,249,341	+		Pf1N1B4_2895	0.79	+1.1
3,249,341	+		Pf1N1B4_2895	0.79	+1.0
3,249,342	-		Pf1N1B4_2895	0.79	-0.1
3,249,401	-		Pf1N1B4_2895	0.84	-1.1
3,249,401	-		Pf1N1B4_2895	0.84	-2.0
3,249,416	+		Pf1N1B4_2895	0.85	+1.3
3,249,416	+		Pf1N1B4_2895	0.85	-0.7
3,249,416	+		Pf1N1B4_2895	0.85	+2.0
3,249,417	-		Pf1N1B4_2895	0.85	+1.0
3,249,480	-				-1.7
3,249,546	+				-1.7
3,249,586	+				+0.5
3,249,587	-				+2.1
3,249,587	-				-0.5
3,249,634	+				+2.0
3,249,635	-				+1.9
3,249,635	-				+2.4
3,249,635	-				+1.0
3,249,635	-				+0.9
3,249,635	-				-1.2
3,249,635	-				+0.4
3,249,635	-				-1.1
3,249,635	-				-1.7
3,249,638	+				+0.8
3,249,638	+				+3.3
3,249,638	+				-0.5
3,249,638	+				-0.4
3,249,639	-				-0.0
3,249,639	-				+1.0
3,249,647	+				+0.6
3,249,647	+				-0.2
3,249,647	+				+1.0
3,249,647	+				-3.3
3,249,647	+				-0.1
3,249,648	-				-0.4
3,249,648	-				-1.5
3,249,828	+				-2.9
3,249,828	+				-2.7
3,249,829	-				-0.7
3,249,921	+				+1.4
3,249,921	+				+1.5
3,249,921	+				-0.2
3,249,921	+				+2.4
3,250,139	+		Pf1N1B4_2896	0.23	+0.6
3,250,209	+		Pf1N1B4_2896	0.28	-1.1
3,250,209	+		Pf1N1B4_2896	0.28	-0.3
3,250,225	-		Pf1N1B4_2896	0.29	-1.4
3,250,447	-		Pf1N1B4_2896	0.45	+0.7
3,250,504	+		Pf1N1B4_2896	0.50	+1.4
3,250,563	-		Pf1N1B4_2896	0.54	-1.6