Experiment: carbon source Sucrose 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5937 and Pf1N1B4_5938 overlap by 4 nucleotides Pf1N1B4_5938 and Pf1N1B4_5939 are separated by 45 nucleotides Pf1N1B4_5939 and Pf1N1B4_5940 overlap by 4 nucleotides
Pf1N1B4_5937 - dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13), at 382,060 to 382,599
_5937
Pf1N1B4_5938 - Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24), at 382,596 to 383,474
_5938
Pf1N1B4_5939 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 383,520 to 384,587
_5939
Pf1N1B4_5940 - Alpha-D-GlcNAc alpha-1,2-L-rhamnosyltransferase (EC 2.4.1.-), at 384,584 to 385,711
_5940
Position (kb) 383
384
385 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 382.568 kb on - strand at 382.614 kb on - strand at 382.865 kb on - strand, within Pf1N1B4_5938 at 382.865 kb on - strand, within Pf1N1B4_5938 at 382.949 kb on - strand, within Pf1N1B4_5938 at 382.949 kb on - strand, within Pf1N1B4_5938 at 382.955 kb on - strand, within Pf1N1B4_5938 at 382.955 kb on - strand, within Pf1N1B4_5938 at 382.955 kb on - strand, within Pf1N1B4_5938 at 383.141 kb on - strand, within Pf1N1B4_5938 at 383.174 kb on + strand, within Pf1N1B4_5938 at 383.175 kb on - strand, within Pf1N1B4_5938 at 383.322 kb on - strand, within Pf1N1B4_5938 at 383.322 kb on - strand at 383.329 kb on - strand, within Pf1N1B4_5938 at 383.356 kb on - strand at 383.372 kb on - strand, within Pf1N1B4_5938 at 383.372 kb on - strand, within Pf1N1B4_5938 at 383.372 kb on - strand, within Pf1N1B4_5938 at 383.390 kb on - strand at 383.413 kb on - strand at 383.427 kb on - strand at 383.597 kb on - strand at 383.738 kb on - strand at 383.738 kb on - strand, within Pf1N1B4_5939 at 384.191 kb on + strand, within Pf1N1B4_5939 at 384.192 kb on - strand, within Pf1N1B4_5939 at 384.268 kb on + strand, within Pf1N1B4_5939 at 384.268 kb on + strand, within Pf1N1B4_5939 at 384.325 kb on - strand, within Pf1N1B4_5939 at 384.325 kb on - strand, within Pf1N1B4_5939 at 384.325 kb on - strand, within Pf1N1B4_5939 at 384.325 kb on - strand, within Pf1N1B4_5939 at 384.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 1mM remove 382,568 - -1.9 382,614 - +1.0 382,865 - Pf1N1B4_5938 0.31 +2.2 382,865 - Pf1N1B4_5938 0.31 -1.6 382,949 - Pf1N1B4_5938 0.40 +0.2 382,949 - Pf1N1B4_5938 0.40 -1.8 382,955 - Pf1N1B4_5938 0.41 -3.0 382,955 - Pf1N1B4_5938 0.41 -0.8 382,955 - Pf1N1B4_5938 0.41 -0.9 383,141 - Pf1N1B4_5938 0.62 -1.9 383,174 + Pf1N1B4_5938 0.66 -1.1 383,175 - Pf1N1B4_5938 0.66 -2.2 383,322 - Pf1N1B4_5938 0.83 -3.0 383,322 - -0.9 383,329 - Pf1N1B4_5938 0.83 -3.0 383,356 - -0.8 383,372 - Pf1N1B4_5938 0.88 -0.5 383,372 - Pf1N1B4_5938 0.88 -1.2 383,372 - Pf1N1B4_5938 0.88 -1.7 383,390 - -1.4 383,413 - +0.7 383,427 - -2.0 383,597 - +1.5 383,738 - +2.5 383,738 - Pf1N1B4_5939 0.20 -0.8 384,191 + Pf1N1B4_5939 0.63 -1.5 384,192 - Pf1N1B4_5939 0.63 -2.7 384,268 + Pf1N1B4_5939 0.70 -1.2 384,268 + Pf1N1B4_5939 0.70 -1.6 384,325 - Pf1N1B4_5939 0.75 -1.6 384,325 - Pf1N1B4_5939 0.75 -3.1 384,325 - Pf1N1B4_5939 0.75 +0.7 384,325 - Pf1N1B4_5939 0.75 -0.6 384,576 - -0.1
Or see this region's nucleotide sequence