Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_834

Experiment: carbon source Sucrose 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_833 and Pf1N1B4_834 are separated by 62 nucleotidesPf1N1B4_834 and Pf1N1B4_835 are separated by 92 nucleotides Pf1N1B4_833 - PTS system, glucose-specific IIA component / Phosphotransferase system, phosphocarrier protein HPr / Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 953,352 to 955,886 _833 Pf1N1B4_834 - Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein), at 955,949 to 957,172 _834 Pf1N1B4_835 - Trehalose-6-phosphate hydrolase (EC 3.2.1.93), at 957,265 to 958,914 _835 Position (kb) 955 956 957 958Strain fitness (log2 ratio) -2 -1 0 1 2 3at 955.271 kb on + strand, within Pf1N1B4_833at 955.272 kb on - strand, within Pf1N1B4_833at 955.272 kb on - strand, within Pf1N1B4_833at 955.549 kb on + strand, within Pf1N1B4_833at 955.549 kb on + strand, within Pf1N1B4_833at 955.549 kb on + strand, within Pf1N1B4_833at 955.550 kb on - strand, within Pf1N1B4_833at 955.550 kb on - strand, within Pf1N1B4_833at 955.584 kb on + strand, within Pf1N1B4_833at 955.585 kb on - strand, within Pf1N1B4_833at 955.585 kb on - strand, within Pf1N1B4_833at 955.585 kb on - strand, within Pf1N1B4_833at 955.773 kb on - strandat 955.773 kb on - strandat 955.950 kb on + strandat 955.951 kb on - strandat 956.085 kb on + strand, within Pf1N1B4_834at 956.085 kb on + strand, within Pf1N1B4_834at 956.085 kb on + strand, within Pf1N1B4_834at 956.085 kb on + strand, within Pf1N1B4_834at 956.085 kb on + strand, within Pf1N1B4_834at 956.085 kb on + strand, within Pf1N1B4_834at 956.086 kb on - strand, within Pf1N1B4_834at 956.086 kb on - strand, within Pf1N1B4_834at 956.086 kb on - strand, within Pf1N1B4_834at 956.086 kb on - strand, within Pf1N1B4_834at 956.086 kb on - strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.091 kb on + strand, within Pf1N1B4_834at 956.092 kb on - strand, within Pf1N1B4_834at 956.092 kb on - strand, within Pf1N1B4_834at 956.092 kb on - strand, within Pf1N1B4_834at 956.092 kb on - strand, within Pf1N1B4_834at 956.092 kb on - strandat 956.092 kb on - strand, within Pf1N1B4_834at 956.092 kb on - strand, within Pf1N1B4_834at 956.094 kb on + strand, within Pf1N1B4_834at 956.095 kb on - strand, within Pf1N1B4_834at 956.095 kb on - strand, within Pf1N1B4_834at 956.248 kb on - strand, within Pf1N1B4_834at 956.313 kb on + strand, within Pf1N1B4_834at 956.417 kb on - strand, within Pf1N1B4_834at 956.419 kb on - strand, within Pf1N1B4_834at 956.464 kb on + strand, within Pf1N1B4_834at 956.465 kb on - strandat 956.465 kb on - strand, within Pf1N1B4_834at 956.465 kb on - strand, within Pf1N1B4_834at 956.465 kb on - strand, within Pf1N1B4_834at 956.554 kb on - strand, within Pf1N1B4_834at 956.554 kb on - strand, within Pf1N1B4_834at 956.554 kb on - strand, within Pf1N1B4_834at 956.554 kb on - strand, within Pf1N1B4_834at 956.554 kb on - strand, within Pf1N1B4_834at 956.628 kb on + strand, within Pf1N1B4_834at 956.628 kb on + strand, within Pf1N1B4_834at 956.628 kb on + strand, within Pf1N1B4_834at 956.628 kb on + strand, within Pf1N1B4_834at 956.628 kb on + strand, within Pf1N1B4_834at 956.628 kb on + strandat 956.629 kb on - strand, within Pf1N1B4_834at 956.629 kb on - strand, within Pf1N1B4_834at 956.629 kb on - strand, within Pf1N1B4_834at 956.629 kb on - strand, within Pf1N1B4_834at 956.667 kb on + strand, within Pf1N1B4_834at 956.667 kb on + strand, within Pf1N1B4_834at 956.667 kb on + strand, within Pf1N1B4_834at 956.667 kb on + strandat 956.668 kb on - strand, within Pf1N1B4_834at 956.668 kb on - strand, within Pf1N1B4_834at 956.668 kb on - strand, within Pf1N1B4_834at 956.673 kb on + strand, within Pf1N1B4_834at 956.673 kb on + strand, within Pf1N1B4_834at 956.673 kb on + strand, within Pf1N1B4_834at 956.674 kb on - strand, within Pf1N1B4_834at 956.733 kb on + strand, within Pf1N1B4_834at 956.736 kb on + strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.737 kb on - strand, within Pf1N1B4_834at 956.769 kb on + strand, within Pf1N1B4_834at 956.769 kb on + strand, within Pf1N1B4_834at 956.770 kb on - strand, within Pf1N1B4_834at 956.770 kb on - strand, within Pf1N1B4_834at 956.770 kb on - strand, within Pf1N1B4_834at 956.832 kb on + strand, within Pf1N1B4_834at 956.832 kb on + strand, within Pf1N1B4_834at 956.832 kb on + strand, within Pf1N1B4_834at 956.832 kb on + strand, within Pf1N1B4_834at 956.832 kb on + strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834at 956.833 kb on - strand, within Pf1N1B4_834at 956.890 kb on - strand, within Pf1N1B4_834at 956.890 kb on - strand, within Pf1N1B4_834at 956.898 kb on + strand, within Pf1N1B4_834at 956.898 kb on + strand, within Pf1N1B4_834at 956.898 kb on + strandat 956.898 kb on + strandat 956.898 kb on + strand, within Pf1N1B4_834at 956.898 kb on + strand, within Pf1N1B4_834at 956.899 kb on - strand, within Pf1N1B4_834at 956.979 kb on + strand, within Pf1N1B4_834at 956.980 kb on - strand, within Pf1N1B4_834at 956.980 kb on - strand, within Pf1N1B4_834at 956.980 kb on - strand, within Pf1N1B4_834at 956.980 kb on - strand, within Pf1N1B4_834at 956.980 kb on - strandat 957.084 kb on + strandat 957.085 kb on - strandat 957.159 kb on - strandat 957.159 kb on - strandat 957.191 kb on + strandat 957.299 kb on + strandat 957.422 kb on + strandat 957.499 kb on + strand, within Pf1N1B4_835at 957.972 kb on + strand, within Pf1N1B4_835

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 1mM
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955,271 + Pf1N1B4_833 0.76 +2.2
955,272 - Pf1N1B4_833 0.76 -0.2
955,272 - Pf1N1B4_833 0.76 +0.5
955,549 + Pf1N1B4_833 0.87 -1.6
955,549 + Pf1N1B4_833 0.87 +0.4
955,549 + Pf1N1B4_833 0.87 -2.3
955,550 - Pf1N1B4_833 0.87 +1.7
955,550 - Pf1N1B4_833 0.87 -0.6
955,584 + Pf1N1B4_833 0.88 -1.5
955,585 - Pf1N1B4_833 0.88 +0.4
955,585 - Pf1N1B4_833 0.88 +0.7
955,585 - Pf1N1B4_833 0.88 -0.7
955,773 - -1.1
955,773 - +2.6
955,950 + -0.8
955,951 - -0.7
956,085 + Pf1N1B4_834 0.11 -0.2
956,085 + Pf1N1B4_834 0.11 +1.1
956,085 + Pf1N1B4_834 0.11 +0.5
956,085 + Pf1N1B4_834 0.11 +1.7
956,085 + Pf1N1B4_834 0.11 -0.0
956,085 + Pf1N1B4_834 0.11 +0.7
956,086 - Pf1N1B4_834 0.11 -1.2
956,086 - Pf1N1B4_834 0.11 -1.9
956,086 - Pf1N1B4_834 0.11 -0.2
956,086 - Pf1N1B4_834 0.11 +0.1
956,086 - Pf1N1B4_834 0.11 +1.0
956,091 + Pf1N1B4_834 0.12 +2.1
956,091 + Pf1N1B4_834 0.12 -0.2
956,091 + Pf1N1B4_834 0.12 +0.2
956,091 + Pf1N1B4_834 0.12 -0.3
956,091 + Pf1N1B4_834 0.12 -0.2
956,091 + Pf1N1B4_834 0.12 -1.0
956,091 + Pf1N1B4_834 0.12 -1.0
956,091 + Pf1N1B4_834 0.12 +1.0
956,091 + Pf1N1B4_834 0.12 -1.6
956,091 + Pf1N1B4_834 0.12 +1.6
956,092 - Pf1N1B4_834 0.12 -0.5
956,092 - Pf1N1B4_834 0.12 -1.0
956,092 - Pf1N1B4_834 0.12 +1.9
956,092 - Pf1N1B4_834 0.12 -1.4
956,092 - -1.0
956,092 - Pf1N1B4_834 0.12 -0.0
956,092 - Pf1N1B4_834 0.12 -2.6
956,094 + Pf1N1B4_834 0.12 -1.5
956,095 - Pf1N1B4_834 0.12 -1.5
956,095 - Pf1N1B4_834 0.12 -0.7
956,248 - Pf1N1B4_834 0.24 +1.4
956,313 + Pf1N1B4_834 0.30 -0.0
956,417 - Pf1N1B4_834 0.38 +1.9
956,419 - Pf1N1B4_834 0.38 -0.9
956,464 + Pf1N1B4_834 0.42 -2.3
956,465 - -1.0
956,465 - Pf1N1B4_834 0.42 -2.7
956,465 - Pf1N1B4_834 0.42 +1.1
956,465 - Pf1N1B4_834 0.42 -1.8
956,554 - Pf1N1B4_834 0.49 -1.7
956,554 - Pf1N1B4_834 0.49 -2.2
956,554 - Pf1N1B4_834 0.49 -1.9
956,554 - Pf1N1B4_834 0.49 +0.3
956,554 - Pf1N1B4_834 0.49 -2.1
956,628 + Pf1N1B4_834 0.55 +1.9
956,628 + Pf1N1B4_834 0.55 +0.8
956,628 + Pf1N1B4_834 0.55 +3.4
956,628 + Pf1N1B4_834 0.55 +2.0
956,628 + Pf1N1B4_834 0.55 -2.3
956,628 + -0.2
956,629 - Pf1N1B4_834 0.56 +1.0
956,629 - Pf1N1B4_834 0.56 +1.0
956,629 - Pf1N1B4_834 0.56 -1.4
956,629 - Pf1N1B4_834 0.56 +0.8
956,667 + Pf1N1B4_834 0.59 -0.9
956,667 + Pf1N1B4_834 0.59 -0.7
956,667 + Pf1N1B4_834 0.59 -0.0
956,667 + -0.9
956,668 - Pf1N1B4_834 0.59 -0.6
956,668 - Pf1N1B4_834 0.59 +0.7
956,668 - Pf1N1B4_834 0.59 +2.3
956,673 + Pf1N1B4_834 0.59 +0.2
956,673 + Pf1N1B4_834 0.59 -1.9
956,673 + Pf1N1B4_834 0.59 -1.3
956,674 - Pf1N1B4_834 0.59 +0.4
956,733 + Pf1N1B4_834 0.64 -1.0
956,736 + Pf1N1B4_834 0.64 -2.1
956,737 - Pf1N1B4_834 0.64 -2.0
956,737 - Pf1N1B4_834 0.64 -1.1
956,737 - Pf1N1B4_834 0.64 +1.5
956,737 - Pf1N1B4_834 0.64 +0.2
956,737 - Pf1N1B4_834 0.64 +0.9
956,737 - Pf1N1B4_834 0.64 +0.1
956,769 + Pf1N1B4_834 0.67 +0.1
956,769 + Pf1N1B4_834 0.67 -0.3
956,770 - Pf1N1B4_834 0.67 -1.2
956,770 - Pf1N1B4_834 0.67 +0.1
956,770 - Pf1N1B4_834 0.67 -0.5
956,832 + Pf1N1B4_834 0.72 -2.7
956,832 + Pf1N1B4_834 0.72 +2.1
956,832 + Pf1N1B4_834 0.72 +2.3
956,832 + Pf1N1B4_834 0.72 -1.4
956,832 + Pf1N1B4_834 0.72 +0.6
956,833 - Pf1N1B4_834 0.72 -0.0
956,833 - Pf1N1B4_834 0.72 +0.7
956,833 - Pf1N1B4_834 0.72 +2.6
956,833 - Pf1N1B4_834 0.72 +0.9
956,833 - Pf1N1B4_834 0.72 -0.4
956,833 - Pf1N1B4_834 0.72 -1.4
956,890 - Pf1N1B4_834 0.77 -1.3
956,890 - Pf1N1B4_834 0.77 +1.2
956,898 + Pf1N1B4_834 0.78 +0.5
956,898 + Pf1N1B4_834 0.78 -0.4
956,898 + +0.3
956,898 + +2.6
956,898 + Pf1N1B4_834 0.78 -1.3
956,898 + Pf1N1B4_834 0.78 -1.7
956,899 - Pf1N1B4_834 0.78 -1.0
956,979 + Pf1N1B4_834 0.84 -0.7
956,980 - Pf1N1B4_834 0.84 +0.6
956,980 - Pf1N1B4_834 0.84 -0.2
956,980 - Pf1N1B4_834 0.84 -0.6
956,980 - Pf1N1B4_834 0.84 -1.2
956,980 - +0.8
957,084 + +1.5
957,085 - +0.5
957,159 - -1.2
957,159 - +1.6
957,191 + +0.7
957,299 + -1.0
957,422 + +1.4
957,499 + Pf1N1B4_835 0.14 +2.2
957,972 + Pf1N1B4_835 0.43 +1.3

Or see this region's nucleotide sequence