Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5947

Experiment: carbon source Sucrose 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5946 and Pf1N1B4_5947 are separated by 45 nucleotidesPf1N1B4_5947 and Pf1N1B4_5948 are separated by 780 nucleotides Pf1N1B4_5946 - Tyrosine-protein kinase Wzc (EC 2.7.10.2), at 394,421 to 396,649 _5946 Pf1N1B4_5947 - Low molecular weight protein-tyrosine-phosphatase Wzb (EC 3.1.3.48), at 396,695 to 397,012 _5947 Pf1N1B4_5948 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 397,793 to 398,626 _5948 Position (kb) 396 397 398Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 397.174 kb on - strandat 397.174 kb on - strandat 397.350 kb on - strandat 397.418 kb on + strandat 397.443 kb on - strandat 397.444 kb on + strandat 397.444 kb on + strandat 397.445 kb on - strandat 397.445 kb on - strandat 397.774 kb on + strandat 397.888 kb on + strand, within Pf1N1B4_5948at 397.888 kb on + strand, within Pf1N1B4_5948at 397.942 kb on + strand, within Pf1N1B4_5948at 397.942 kb on + strand, within Pf1N1B4_5948at 397.942 kb on + strand, within Pf1N1B4_5948at 397.942 kb on + strandat 397.942 kb on + strand, within Pf1N1B4_5948at 397.942 kb on + strand, within Pf1N1B4_5948at 397.943 kb on - strand, within Pf1N1B4_5948at 397.943 kb on - strand, within Pf1N1B4_5948at 397.943 kb on - strand, within Pf1N1B4_5948at 397.943 kb on - strand, within Pf1N1B4_5948

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 1mM
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397,174 - -3.3
397,174 - -1.4
397,350 - +0.7
397,418 + -3.4
397,443 - -1.8
397,444 + -3.1
397,444 + -2.1
397,445 - -1.8
397,445 - -1.3
397,774 + -2.2
397,888 + Pf1N1B4_5948 0.11 -1.9
397,888 + Pf1N1B4_5948 0.11 +1.2
397,942 + Pf1N1B4_5948 0.18 +1.3
397,942 + Pf1N1B4_5948 0.18 +0.4
397,942 + Pf1N1B4_5948 0.18 -0.7
397,942 + +3.0
397,942 + Pf1N1B4_5948 0.18 -2.2
397,942 + Pf1N1B4_5948 0.18 +1.6
397,943 - Pf1N1B4_5948 0.18 -3.6
397,943 - Pf1N1B4_5948 0.18 +0.0
397,943 - Pf1N1B4_5948 0.18 -2.2
397,943 - Pf1N1B4_5948 0.18 +1.0

Or see this region's nucleotide sequence