Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5946

Experiment: carbon source Sucrose 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5945 and Pf1N1B4_5946 are separated by 123 nucleotidesPf1N1B4_5946 and Pf1N1B4_5947 are separated by 45 nucleotides Pf1N1B4_5945 - UDP-glucose dehydrogenase (EC 1.1.1.22), at 392,789 to 394,297 _5945 Pf1N1B4_5946 - Tyrosine-protein kinase Wzc (EC 2.7.10.2), at 394,421 to 396,649 _5946 Pf1N1B4_5947 - Low molecular weight protein-tyrosine-phosphatase Wzb (EC 3.1.3.48), at 396,695 to 397,012 _5947 Position (kb) 394 395 396 397Strain fitness (log2 ratio) -3 -2 -1 0 1at 394.119 kb on - strand, within Pf1N1B4_5945at 394.210 kb on - strandat 397.174 kb on - strandat 397.174 kb on - strandat 397.350 kb on - strandat 397.418 kb on + strandat 397.443 kb on - strandat 397.444 kb on + strandat 397.444 kb on + strandat 397.445 kb on - strandat 397.445 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 1mM
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394,119 - Pf1N1B4_5945 0.88 -1.8
394,210 - -0.5
397,174 - -3.3
397,174 - -1.4
397,350 - +0.7
397,418 + -3.4
397,443 - -1.8
397,444 + -3.1
397,444 + -2.1
397,445 - -1.8
397,445 - -1.3

Or see this region's nucleotide sequence