Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3651

Experiment: carbon source Sucrose 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3648 and Pf1N1B4_3649 are separated by 68 nucleotidesPf1N1B4_3649 and Pf1N1B4_3650 are separated by 273 nucleotidesPf1N1B4_3650 and Pf1N1B4_3651 overlap by 1 nucleotidesPf1N1B4_3651 and Pf1N1B4_3652 are separated by 289 nucleotides Pf1N1B4_3648 - hypothetical protein, at 4,053,995 to 4,054,498 _3648 Pf1N1B4_3649 - Excisionase domain protein, at 4,054,567 to 4,054,998 _3649 Pf1N1B4_3650 - hypothetical protein, at 4,055,272 to 4,055,487 _3650 Pf1N1B4_3651 - Antitoxin 1, at 4,055,487 to 4,055,891 _3651 Pf1N1B4_3652 - Mobile element protein, at 4,056,181 to 4,057,209 _3652 Position (kb) 4055 4056Strain fitness (log2 ratio) -2 -1 0 1 2at 4054.542 kb on + strandat 4054.542 kb on + strandat 4054.543 kb on - strandat 4054.544 kb on + strandat 4054.544 kb on + strandat 4054.544 kb on + strandat 4054.544 kb on + strandat 4054.544 kb on + strandat 4054.544 kb on + strandat 4054.545 kb on - strandat 4054.545 kb on - strandat 4054.545 kb on - strandat 4054.545 kb on - strandat 4054.545 kb on - strandat 4054.545 kb on - strandat 4054.545 kb on - strandat 4054.545 kb on - strandat 4055.114 kb on + strandat 4055.114 kb on + strandat 4055.115 kb on - strandat 4055.183 kb on + strandat 4055.375 kb on - strand, within Pf1N1B4_3650at 4055.748 kb on + strand, within Pf1N1B4_3651at 4055.749 kb on - strand, within Pf1N1B4_3651at 4055.814 kb on + strand, within Pf1N1B4_3651at 4055.896 kb on + strandat 4055.930 kb on - strandat 4055.930 kb on - strandat 4055.936 kb on - strandat 4055.936 kb on - strandat 4055.936 kb on - strandat 4055.936 kb on - strandat 4055.936 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 1mM
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4,054,542 + +0.9
4,054,542 + +0.7
4,054,543 - -0.0
4,054,544 + -1.6
4,054,544 + -1.2
4,054,544 + +1.3
4,054,544 + +0.4
4,054,544 + -1.6
4,054,544 + +0.0
4,054,545 - -0.2
4,054,545 - +0.6
4,054,545 - +2.4
4,054,545 - -0.3
4,054,545 - +0.4
4,054,545 - -1.3
4,054,545 - +0.5
4,054,545 - -0.4
4,055,114 + +0.2
4,055,114 + -1.9
4,055,115 - +0.4
4,055,183 + -1.5
4,055,375 - Pf1N1B4_3650 0.48 +1.6
4,055,748 + Pf1N1B4_3651 0.64 -1.2
4,055,749 - Pf1N1B4_3651 0.65 -2.6
4,055,814 + Pf1N1B4_3651 0.81 -1.8
4,055,896 + +2.1
4,055,930 - -0.0
4,055,930 - -1.0
4,055,936 - +1.5
4,055,936 - -2.1
4,055,936 - +0.1
4,055,936 - -2.5
4,055,936 - -1.8

Or see this region's nucleotide sequence