Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_336

Experiment: carbon source Sucrose 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_335 and Pf1N1B4_336 are separated by 109 nucleotidesPf1N1B4_336 and Pf1N1B4_337 overlap by 11 nucleotidesPf1N1B4_337 and Pf1N1B4_338 are separated by 117 nucleotides Pf1N1B4_335 - Glycosyltransferase, at 394,633 to 399,384 _335 Pf1N1B4_336 - Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40), at 399,494 to 400,861 _336 Pf1N1B4_337 - O-antigen export system permease protein RfbD, at 400,851 to 401,669 _337 Pf1N1B4_338 - Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-), at 401,787 to 402,794 _338 Position (kb) 399 400 401Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 398.560 kb on + strand, within Pf1N1B4_335at 398.561 kb on - strand, within Pf1N1B4_335at 398.814 kb on + strandat 398.815 kb on - strand, within Pf1N1B4_335at 398.850 kb on - strand, within Pf1N1B4_335at 398.946 kb on - strandat 398.979 kb on - strandat 398.979 kb on - strandat 398.979 kb on - strandat 399.018 kb on - strandat 399.073 kb on - strandat 399.202 kb on - strandat 399.283 kb on - strandat 399.533 kb on - strandat 399.533 kb on - strandat 399.618 kb on + strandat 399.619 kb on - strandat 399.619 kb on - strandat 399.667 kb on - strand, within Pf1N1B4_336at 399.667 kb on - strand, within Pf1N1B4_336at 399.667 kb on - strand, within Pf1N1B4_336at 399.728 kb on + strand, within Pf1N1B4_336at 399.728 kb on + strandat 399.729 kb on - strand, within Pf1N1B4_336at 399.729 kb on - strand, within Pf1N1B4_336at 399.729 kb on - strand, within Pf1N1B4_336at 399.729 kb on - strand, within Pf1N1B4_336at 399.729 kb on - strand, within Pf1N1B4_336at 399.729 kb on - strand, within Pf1N1B4_336at 399.729 kb on - strand, within Pf1N1B4_336at 399.729 kb on - strand, within Pf1N1B4_336at 399.732 kb on + strandat 399.732 kb on + strand, within Pf1N1B4_336at 399.732 kb on + strand, within Pf1N1B4_336at 399.732 kb on + strand, within Pf1N1B4_336at 399.732 kb on + strand, within Pf1N1B4_336at 399.732 kb on + strand, within Pf1N1B4_336at 399.732 kb on + strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.733 kb on - strand, within Pf1N1B4_336at 399.736 kb on + strand, within Pf1N1B4_336at 399.737 kb on - strand, within Pf1N1B4_336at 399.737 kb on - strand, within Pf1N1B4_336at 399.737 kb on - strand, within Pf1N1B4_336at 399.737 kb on - strand, within Pf1N1B4_336at 399.740 kb on - strand, within Pf1N1B4_336at 399.740 kb on - strand, within Pf1N1B4_336at 399.852 kb on + strand, within Pf1N1B4_336at 399.853 kb on - strand, within Pf1N1B4_336at 399.853 kb on - strand, within Pf1N1B4_336at 399.853 kb on - strand, within Pf1N1B4_336at 399.856 kb on + strand, within Pf1N1B4_336at 399.856 kb on + strand, within Pf1N1B4_336at 399.856 kb on + strandat 399.856 kb on + strand, within Pf1N1B4_336at 399.856 kb on + strand, within Pf1N1B4_336at 399.856 kb on + strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.857 kb on - strand, within Pf1N1B4_336at 399.858 kb on + strand, within Pf1N1B4_336at 399.859 kb on - strand, within Pf1N1B4_336at 399.859 kb on - strand, within Pf1N1B4_336at 399.864 kb on + strand, within Pf1N1B4_336at 399.864 kb on + strand, within Pf1N1B4_336at 399.865 kb on - strand, within Pf1N1B4_336at 399.865 kb on - strand, within Pf1N1B4_336at 399.865 kb on - strand, within Pf1N1B4_336at 399.865 kb on - strand, within Pf1N1B4_336at 399.865 kb on - strand, within Pf1N1B4_336at 399.958 kb on + strand, within Pf1N1B4_336at 399.959 kb on - strand, within Pf1N1B4_336at 399.959 kb on - strand, within Pf1N1B4_336at 399.976 kb on + strand, within Pf1N1B4_336at 399.977 kb on - strand, within Pf1N1B4_336at 399.977 kb on - strand, within Pf1N1B4_336at 399.977 kb on - strand, within Pf1N1B4_336at 400.023 kb on - strand, within Pf1N1B4_336at 400.131 kb on + strand, within Pf1N1B4_336at 400.131 kb on + strand, within Pf1N1B4_336at 400.131 kb on + strand, within Pf1N1B4_336at 400.131 kb on + strand, within Pf1N1B4_336at 400.132 kb on - strand, within Pf1N1B4_336at 400.132 kb on - strand, within Pf1N1B4_336at 400.132 kb on - strand, within Pf1N1B4_336at 400.132 kb on - strand, within Pf1N1B4_336at 400.132 kb on - strand, within Pf1N1B4_336at 400.132 kb on - strand, within Pf1N1B4_336at 400.132 kb on - strand, within Pf1N1B4_336at 400.132 kb on - strand, within Pf1N1B4_336at 400.132 kb on - strand, within Pf1N1B4_336at 400.132 kb on - strand, within Pf1N1B4_336at 400.132 kb on - strand, within Pf1N1B4_336at 400.132 kb on - strand, within Pf1N1B4_336at 400.132 kb on - strand, within Pf1N1B4_336at 400.132 kb on - strand, within Pf1N1B4_336at 400.132 kb on - strand, within Pf1N1B4_336at 400.132 kb on - strand, within Pf1N1B4_336at 400.146 kb on + strand, within Pf1N1B4_336at 400.262 kb on - strand, within Pf1N1B4_336at 400.279 kb on + strand, within Pf1N1B4_336at 400.316 kb on + strand, within Pf1N1B4_336at 400.316 kb on + strand, within Pf1N1B4_336at 400.317 kb on - strand, within Pf1N1B4_336at 400.317 kb on - strand, within Pf1N1B4_336at 400.355 kb on + strand, within Pf1N1B4_336at 400.356 kb on - strand, within Pf1N1B4_336at 400.356 kb on - strand, within Pf1N1B4_336at 400.412 kb on - strand, within Pf1N1B4_336at 400.412 kb on - strand, within Pf1N1B4_336at 400.417 kb on - strand, within Pf1N1B4_336at 400.417 kb on - strand, within Pf1N1B4_336at 400.417 kb on - strand, within Pf1N1B4_336at 400.417 kb on - strand, within Pf1N1B4_336at 400.527 kb on + strand, within Pf1N1B4_336at 400.528 kb on - strand, within Pf1N1B4_336at 400.528 kb on - strand, within Pf1N1B4_336at 400.752 kb on + strandat 400.752 kb on + strandat 400.752 kb on + strandat 400.752 kb on + strandat 400.806 kb on + strandat 400.807 kb on - strandat 400.807 kb on - strandat 400.810 kb on + strandat 400.810 kb on + strandat 400.811 kb on - strandat 400.849 kb on + strandat 400.850 kb on - strandat 400.850 kb on - strandat 400.850 kb on - strandat 400.850 kb on - strandat 400.850 kb on - strandat 400.852 kb on + strandat 400.874 kb on + strandat 400.928 kb on + strandat 400.929 kb on - strandat 400.930 kb on + strandat 400.931 kb on - strandat 400.931 kb on - strandat 400.931 kb on - strandat 400.931 kb on - strandat 400.931 kb on - strandat 400.931 kb on - strandat 400.931 kb on - strandat 400.931 kb on - strandat 400.931 kb on - strandat 400.933 kb on + strand, within Pf1N1B4_337at 400.933 kb on + strand, within Pf1N1B4_337at 400.934 kb on - strand, within Pf1N1B4_337at 400.934 kb on - strandat 400.934 kb on - strand, within Pf1N1B4_337at 400.934 kb on - strand, within Pf1N1B4_337at 400.960 kb on - strand, within Pf1N1B4_337at 400.960 kb on - strand, within Pf1N1B4_337at 401.216 kb on + strand, within Pf1N1B4_337at 401.217 kb on - strand, within Pf1N1B4_337at 401.217 kb on - strand, within Pf1N1B4_337at 401.264 kb on + strand, within Pf1N1B4_337at 401.316 kb on + strand, within Pf1N1B4_337at 401.344 kb on - strand, within Pf1N1B4_337at 401.386 kb on - strand, within Pf1N1B4_337at 401.405 kb on + strand, within Pf1N1B4_337at 401.406 kb on - strand, within Pf1N1B4_337at 401.406 kb on - strand, within Pf1N1B4_337at 401.432 kb on + strand, within Pf1N1B4_337at 401.432 kb on + strand, within Pf1N1B4_337at 401.655 kb on - strandat 401.675 kb on - strandat 401.735 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 1mM
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398,560 + Pf1N1B4_335 0.83 +2.4
398,561 - Pf1N1B4_335 0.83 -2.9
398,814 + -1.1
398,815 - Pf1N1B4_335 0.88 -3.5
398,850 - Pf1N1B4_335 0.89 -2.4
398,946 - -1.7
398,979 - -1.5
398,979 - -1.5
398,979 - -3.0
399,018 - -1.7
399,073 - -2.3
399,202 - -1.9
399,283 - -2.6
399,533 - -1.2
399,533 - -1.1
399,618 + -0.8
399,619 - -2.3
399,619 - +0.4
399,667 - Pf1N1B4_336 0.13 +0.1
399,667 - Pf1N1B4_336 0.13 -1.8
399,667 - Pf1N1B4_336 0.13 -2.0
399,728 + Pf1N1B4_336 0.17 -1.5
399,728 + -1.4
399,729 - Pf1N1B4_336 0.17 -1.3
399,729 - Pf1N1B4_336 0.17 -1.9
399,729 - Pf1N1B4_336 0.17 -1.5
399,729 - Pf1N1B4_336 0.17 -2.0
399,729 - Pf1N1B4_336 0.17 -1.8
399,729 - Pf1N1B4_336 0.17 -2.4
399,729 - Pf1N1B4_336 0.17 -0.8
399,729 - Pf1N1B4_336 0.17 +1.2
399,732 + +0.1
399,732 + Pf1N1B4_336 0.17 -0.0
399,732 + Pf1N1B4_336 0.17 -1.1
399,732 + Pf1N1B4_336 0.17 -0.2
399,732 + Pf1N1B4_336 0.17 -1.3
399,732 + Pf1N1B4_336 0.17 -0.2
399,732 + Pf1N1B4_336 0.17 -3.6
399,733 - Pf1N1B4_336 0.17 -2.8
399,733 - Pf1N1B4_336 0.17 +1.0
399,733 - Pf1N1B4_336 0.17 -0.8
399,733 - Pf1N1B4_336 0.17 -2.3
399,733 - Pf1N1B4_336 0.17 -0.8
399,733 - Pf1N1B4_336 0.17 -1.4
399,733 - Pf1N1B4_336 0.17 -2.5
399,733 - Pf1N1B4_336 0.17 -1.7
399,733 - Pf1N1B4_336 0.17 -1.5
399,733 - Pf1N1B4_336 0.17 -2.1
399,733 - Pf1N1B4_336 0.17 -3.0
399,733 - Pf1N1B4_336 0.17 -2.3
399,733 - Pf1N1B4_336 0.17 -1.4
399,733 - Pf1N1B4_336 0.17 -0.7
399,733 - Pf1N1B4_336 0.17 -2.9
399,733 - Pf1N1B4_336 0.17 -2.3
399,733 - Pf1N1B4_336 0.17 -1.2
399,733 - Pf1N1B4_336 0.17 -3.0
399,733 - Pf1N1B4_336 0.17 -2.5
399,733 - Pf1N1B4_336 0.17 -2.4
399,733 - Pf1N1B4_336 0.17 -1.4
399,733 - Pf1N1B4_336 0.17 -3.2
399,733 - Pf1N1B4_336 0.17 -2.2
399,733 - Pf1N1B4_336 0.17 -2.1
399,733 - Pf1N1B4_336 0.17 -2.8
399,733 - Pf1N1B4_336 0.17 -1.4
399,733 - Pf1N1B4_336 0.17 -0.8
399,733 - Pf1N1B4_336 0.17 -2.2
399,736 + Pf1N1B4_336 0.18 -0.8
399,737 - Pf1N1B4_336 0.18 -1.9
399,737 - Pf1N1B4_336 0.18 -2.4
399,737 - Pf1N1B4_336 0.18 -2.1
399,737 - Pf1N1B4_336 0.18 -2.5
399,740 - Pf1N1B4_336 0.18 -3.1
399,740 - Pf1N1B4_336 0.18 -2.8
399,852 + Pf1N1B4_336 0.26 -2.1
399,853 - Pf1N1B4_336 0.26 -1.8
399,853 - Pf1N1B4_336 0.26 -1.4
399,853 - Pf1N1B4_336 0.26 -1.5
399,856 + Pf1N1B4_336 0.26 -2.0
399,856 + Pf1N1B4_336 0.26 -0.8
399,856 + -0.6
399,856 + Pf1N1B4_336 0.26 -2.1
399,856 + Pf1N1B4_336 0.26 -1.0
399,856 + Pf1N1B4_336 0.26 -3.4
399,857 - Pf1N1B4_336 0.27 -1.3
399,857 - Pf1N1B4_336 0.27 -2.3
399,857 - Pf1N1B4_336 0.27 -2.1
399,857 - Pf1N1B4_336 0.27 -1.5
399,857 - Pf1N1B4_336 0.27 -2.5
399,857 - Pf1N1B4_336 0.27 -1.4
399,857 - Pf1N1B4_336 0.27 -2.3
399,857 - Pf1N1B4_336 0.27 -0.6
399,857 - Pf1N1B4_336 0.27 -2.3
399,857 - Pf1N1B4_336 0.27 -1.4
399,857 - Pf1N1B4_336 0.27 -2.9
399,857 - Pf1N1B4_336 0.27 -2.6
399,857 - Pf1N1B4_336 0.27 -1.8
399,857 - Pf1N1B4_336 0.27 -2.6
399,857 - Pf1N1B4_336 0.27 -0.2
399,857 - Pf1N1B4_336 0.27 +0.8
399,857 - Pf1N1B4_336 0.27 -0.8
399,857 - Pf1N1B4_336 0.27 -2.7
399,857 - Pf1N1B4_336 0.27 -0.7
399,857 - Pf1N1B4_336 0.27 +0.5
399,857 - Pf1N1B4_336 0.27 -3.0
399,857 - Pf1N1B4_336 0.27 -1.6
399,857 - Pf1N1B4_336 0.27 -2.9
399,857 - Pf1N1B4_336 0.27 -2.4
399,857 - Pf1N1B4_336 0.27 -2.3
399,857 - Pf1N1B4_336 0.27 -3.2
399,857 - Pf1N1B4_336 0.27 -2.6
399,857 - Pf1N1B4_336 0.27 -1.5
399,857 - Pf1N1B4_336 0.27 -0.8
399,857 - Pf1N1B4_336 0.27 -2.9
399,858 + Pf1N1B4_336 0.27 -2.6
399,859 - Pf1N1B4_336 0.27 -1.8
399,859 - Pf1N1B4_336 0.27 -2.3
399,864 + Pf1N1B4_336 0.27 -0.7
399,864 + Pf1N1B4_336 0.27 +0.5
399,865 - Pf1N1B4_336 0.27 -1.5
399,865 - Pf1N1B4_336 0.27 -3.4
399,865 - Pf1N1B4_336 0.27 -2.3
399,865 - Pf1N1B4_336 0.27 -1.3
399,865 - Pf1N1B4_336 0.27 -0.6
399,958 + Pf1N1B4_336 0.34 -2.3
399,959 - Pf1N1B4_336 0.34 -3.1
399,959 - Pf1N1B4_336 0.34 -1.9
399,976 + Pf1N1B4_336 0.35 -2.0
399,977 - Pf1N1B4_336 0.35 -2.2
399,977 - Pf1N1B4_336 0.35 -2.9
399,977 - Pf1N1B4_336 0.35 -1.0
400,023 - Pf1N1B4_336 0.39 -2.7
400,131 + Pf1N1B4_336 0.47 -0.9
400,131 + Pf1N1B4_336 0.47 -1.9
400,131 + Pf1N1B4_336 0.47 -1.5
400,131 + Pf1N1B4_336 0.47 -0.9
400,132 - Pf1N1B4_336 0.47 -1.5
400,132 - Pf1N1B4_336 0.47 -1.6
400,132 - Pf1N1B4_336 0.47 -2.8
400,132 - Pf1N1B4_336 0.47 +0.1
400,132 - Pf1N1B4_336 0.47 -2.4
400,132 - Pf1N1B4_336 0.47 -3.6
400,132 - Pf1N1B4_336 0.47 -2.1
400,132 - Pf1N1B4_336 0.47 -0.4
400,132 - Pf1N1B4_336 0.47 -1.9
400,132 - Pf1N1B4_336 0.47 -3.2
400,132 - Pf1N1B4_336 0.47 -2.2
400,132 - Pf1N1B4_336 0.47 -0.7
400,132 - Pf1N1B4_336 0.47 -1.1
400,132 - Pf1N1B4_336 0.47 -1.2
400,132 - Pf1N1B4_336 0.47 -1.4
400,132 - Pf1N1B4_336 0.47 -2.5
400,146 + Pf1N1B4_336 0.48 -0.7
400,262 - Pf1N1B4_336 0.56 -0.4
400,279 + Pf1N1B4_336 0.57 -1.8
400,316 + Pf1N1B4_336 0.60 -3.4
400,316 + Pf1N1B4_336 0.60 -2.5
400,317 - Pf1N1B4_336 0.60 -2.1
400,317 - Pf1N1B4_336 0.60 -1.9
400,355 + Pf1N1B4_336 0.63 -2.0
400,356 - Pf1N1B4_336 0.63 -0.6
400,356 - Pf1N1B4_336 0.63 -2.4
400,412 - Pf1N1B4_336 0.67 -1.9
400,412 - Pf1N1B4_336 0.67 -2.6
400,417 - Pf1N1B4_336 0.67 -2.0
400,417 - Pf1N1B4_336 0.67 -1.5
400,417 - Pf1N1B4_336 0.67 -0.9
400,417 - Pf1N1B4_336 0.67 -2.6
400,527 + Pf1N1B4_336 0.76 -2.8
400,528 - Pf1N1B4_336 0.76 -2.3
400,528 - Pf1N1B4_336 0.76 -0.8
400,752 + -3.0
400,752 + -2.1
400,752 + -2.4
400,752 + -1.5
400,806 + -2.8
400,807 - -1.1
400,807 - -2.6
400,810 + -1.8
400,810 + -1.9
400,811 - -0.8
400,849 + -2.7
400,850 - +0.3
400,850 - -2.9
400,850 - -3.1
400,850 - -2.7
400,850 - -1.9
400,852 + -1.1
400,874 + -2.9
400,928 + -1.1
400,929 - -2.5
400,930 + -1.2
400,931 - -3.4
400,931 - -2.0
400,931 - -1.9
400,931 - -1.7
400,931 - -1.9
400,931 - -1.8
400,931 - -1.3
400,931 - -2.6
400,931 - -1.9
400,933 + Pf1N1B4_337 0.10 -1.5
400,933 + Pf1N1B4_337 0.10 -0.9
400,934 - Pf1N1B4_337 0.10 -2.4
400,934 - -0.8
400,934 - Pf1N1B4_337 0.10 -2.7
400,934 - Pf1N1B4_337 0.10 -2.6
400,960 - Pf1N1B4_337 0.13 -2.3
400,960 - Pf1N1B4_337 0.13 -2.6
401,216 + Pf1N1B4_337 0.45 -1.9
401,217 - Pf1N1B4_337 0.45 -1.9
401,217 - Pf1N1B4_337 0.45 -0.3
401,264 + Pf1N1B4_337 0.50 -1.8
401,316 + Pf1N1B4_337 0.57 -2.9
401,344 - Pf1N1B4_337 0.60 -0.2
401,386 - Pf1N1B4_337 0.65 -2.3
401,405 + Pf1N1B4_337 0.68 -0.6
401,406 - Pf1N1B4_337 0.68 -1.6
401,406 - Pf1N1B4_337 0.68 -0.2
401,432 + Pf1N1B4_337 0.71 +3.0
401,432 + Pf1N1B4_337 0.71 -1.7
401,655 - -2.2
401,675 - -0.9
401,735 + -1.2

Or see this region's nucleotide sequence