Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1934

Experiment: carbon source Sucrose 1mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_1933 and Pf1N1B4_1934 are separated by 552 nucleotidesPf1N1B4_1934 and Pf1N1B4_1935 overlap by 4 nucleotidesPf1N1B4_1935 and Pf1N1B4_1936 are separated by 18 nucleotides Pf1N1B4_1933 - GTPase and tRNA-U34 5-formylation enzyme TrmE, at 2,211,519 to 2,212,889 _1933 Pf1N1B4_1934 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 2,213,442 to 2,215,340 _1934 Pf1N1B4_1935 - rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB, at 2,215,337 to 2,215,981 _1935 Pf1N1B4_1936 - Chromosome (plasmid) partitioning protein ParA, at 2,216,000 to 2,216,797 _1936 Position (kb) 2213 2214 2215 2216Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2212.887 kb on + strandat 2212.887 kb on + strandat 2212.887 kb on + strandat 2212.887 kb on + strandat 2212.887 kb on + strandat 2212.887 kb on + strandat 2212.887 kb on + strandat 2212.887 kb on + strandat 2212.887 kb on + strandat 2212.887 kb on + strandat 2212.887 kb on + strandat 2212.887 kb on + strandat 2212.888 kb on - strandat 2212.888 kb on - strandat 2212.888 kb on - strandat 2212.888 kb on - strandat 2212.888 kb on - strandat 2212.888 kb on - strandat 2212.888 kb on - strandat 2212.888 kb on - strandat 2212.888 kb on - strandat 2212.888 kb on - strandat 2212.888 kb on - strandat 2213.035 kb on - strandat 2213.048 kb on - strandat 2213.048 kb on - strandat 2213.070 kb on + strandat 2213.094 kb on - strandat 2213.134 kb on + strandat 2213.135 kb on - strandat 2213.163 kb on - strandat 2213.163 kb on - strandat 2213.163 kb on - strandat 2213.191 kb on - strandat 2213.191 kb on - strandat 2213.191 kb on - strandat 2213.191 kb on - strandat 2213.204 kb on - strandat 2213.204 kb on - strandat 2213.222 kb on - strandat 2213.256 kb on - strandat 2213.288 kb on + strandat 2213.288 kb on + strandat 2213.295 kb on + strandat 2213.295 kb on + strandat 2213.345 kb on + strandat 2213.363 kb on + strandat 2213.365 kb on + strandat 2213.365 kb on + strandat 2213.365 kb on + strandat 2213.365 kb on + strandat 2213.401 kb on + strandat 2213.401 kb on + strandat 2213.401 kb on + strandat 2216.010 kb on + strandat 2216.010 kb on + strandat 2216.010 kb on + strandat 2216.011 kb on - strandat 2216.011 kb on - strandat 2216.011 kb on - strandat 2216.060 kb on - strandat 2216.060 kb on - strandat 2216.225 kb on + strand, within Pf1N1B4_1936at 2216.226 kb on - strand, within Pf1N1B4_1936at 2216.226 kb on - strand, within Pf1N1B4_1936at 2216.322 kb on + strand, within Pf1N1B4_1936

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 1mM
remove
2,212,887 + +1.7
2,212,887 + -1.7
2,212,887 + +1.9
2,212,887 + -0.6
2,212,887 + -1.6
2,212,887 + -2.0
2,212,887 + -0.0
2,212,887 + -2.2
2,212,887 + +0.7
2,212,887 + -0.3
2,212,887 + -0.7
2,212,887 + +0.3
2,212,888 - -1.6
2,212,888 - -1.7
2,212,888 - +2.2
2,212,888 - -2.2
2,212,888 - -1.2
2,212,888 - +1.4
2,212,888 - +0.2
2,212,888 - +3.3
2,212,888 - -0.9
2,212,888 - -0.6
2,212,888 - -0.4
2,213,035 - -0.3
2,213,048 - +1.4
2,213,048 - +2.7
2,213,070 + +0.1
2,213,094 - -1.3
2,213,134 + -3.8
2,213,135 - -1.9
2,213,163 - +0.1
2,213,163 - +1.6
2,213,163 - +0.5
2,213,191 - -0.5
2,213,191 - +1.1
2,213,191 - -0.4
2,213,191 - +1.5
2,213,204 - +1.1
2,213,204 - -1.8
2,213,222 - -0.7
2,213,256 - -0.3
2,213,288 + +1.0
2,213,288 + -3.1
2,213,295 + -0.3
2,213,295 + +0.1
2,213,345 + -0.7
2,213,363 + -0.8
2,213,365 + +2.2
2,213,365 + -0.7
2,213,365 + +1.4
2,213,365 + -2.9
2,213,401 + -1.0
2,213,401 + -1.6
2,213,401 + -1.3
2,216,010 + -1.4
2,216,010 + -1.4
2,216,010 + +1.0
2,216,011 - -1.2
2,216,011 - +0.8
2,216,011 - -0.2
2,216,060 - -0.8
2,216,060 - +1.7
2,216,225 + Pf1N1B4_1936 0.28 -0.4
2,216,226 - Pf1N1B4_1936 0.28 +0.3
2,216,226 - Pf1N1B4_1936 0.28 +1.3
2,216,322 + Pf1N1B4_1936 0.40 -0.3

Or see this region's nucleotide sequence