Experiment: carbon source Sucrose 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1933 and Pf1N1B4_1934 are separated by 552 nucleotides Pf1N1B4_1934 and Pf1N1B4_1935 overlap by 4 nucleotides Pf1N1B4_1935 and Pf1N1B4_1936 are separated by 18 nucleotides
Pf1N1B4_1933 - GTPase and tRNA-U34 5-formylation enzyme TrmE, at 2,211,519 to 2,212,889
_1933
Pf1N1B4_1934 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 2,213,442 to 2,215,340
_1934
Pf1N1B4_1935 - rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB, at 2,215,337 to 2,215,981
_1935
Pf1N1B4_1936 - Chromosome (plasmid) partitioning protein ParA, at 2,216,000 to 2,216,797
_1936
Position (kb)
2213
2214
2215
2216 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2212.887 kb on + strand at 2212.887 kb on + strand at 2212.887 kb on + strand at 2212.887 kb on + strand at 2212.887 kb on + strand at 2212.887 kb on + strand at 2212.887 kb on + strand at 2212.887 kb on + strand at 2212.887 kb on + strand at 2212.887 kb on + strand at 2212.887 kb on + strand at 2212.887 kb on + strand at 2212.888 kb on - strand at 2212.888 kb on - strand at 2212.888 kb on - strand at 2212.888 kb on - strand at 2212.888 kb on - strand at 2212.888 kb on - strand at 2212.888 kb on - strand at 2212.888 kb on - strand at 2212.888 kb on - strand at 2212.888 kb on - strand at 2212.888 kb on - strand at 2213.035 kb on - strand at 2213.048 kb on - strand at 2213.048 kb on - strand at 2213.070 kb on + strand at 2213.094 kb on - strand at 2213.134 kb on + strand at 2213.135 kb on - strand at 2213.163 kb on - strand at 2213.163 kb on - strand at 2213.163 kb on - strand at 2213.191 kb on - strand at 2213.191 kb on - strand at 2213.191 kb on - strand at 2213.191 kb on - strand at 2213.204 kb on - strand at 2213.204 kb on - strand at 2213.222 kb on - strand at 2213.256 kb on - strand at 2213.288 kb on + strand at 2213.288 kb on + strand at 2213.295 kb on + strand at 2213.295 kb on + strand at 2213.345 kb on + strand at 2213.363 kb on + strand at 2213.365 kb on + strand at 2213.365 kb on + strand at 2213.365 kb on + strand at 2213.365 kb on + strand at 2213.401 kb on + strand at 2213.401 kb on + strand at 2213.401 kb on + strand at 2216.010 kb on + strand at 2216.010 kb on + strand at 2216.010 kb on + strand at 2216.011 kb on - strand at 2216.011 kb on - strand at 2216.011 kb on - strand at 2216.060 kb on - strand at 2216.060 kb on - strand at 2216.225 kb on + strand, within Pf1N1B4_1936 at 2216.226 kb on - strand, within Pf1N1B4_1936 at 2216.226 kb on - strand, within Pf1N1B4_1936 at 2216.322 kb on + strand, within Pf1N1B4_1936
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 1mM remove 2,212,887 + +1.7 2,212,887 + -1.7 2,212,887 + +1.9 2,212,887 + -0.6 2,212,887 + -1.6 2,212,887 + -2.0 2,212,887 + -0.0 2,212,887 + -2.2 2,212,887 + +0.7 2,212,887 + -0.3 2,212,887 + -0.7 2,212,887 + +0.3 2,212,888 - -1.6 2,212,888 - -1.7 2,212,888 - +2.2 2,212,888 - -2.2 2,212,888 - -1.2 2,212,888 - +1.4 2,212,888 - +0.2 2,212,888 - +3.3 2,212,888 - -0.9 2,212,888 - -0.6 2,212,888 - -0.4 2,213,035 - -0.3 2,213,048 - +1.4 2,213,048 - +2.7 2,213,070 + +0.1 2,213,094 - -1.3 2,213,134 + -3.8 2,213,135 - -1.9 2,213,163 - +0.1 2,213,163 - +1.6 2,213,163 - +0.5 2,213,191 - -0.5 2,213,191 - +1.1 2,213,191 - -0.4 2,213,191 - +1.5 2,213,204 - +1.1 2,213,204 - -1.8 2,213,222 - -0.7 2,213,256 - -0.3 2,213,288 + +1.0 2,213,288 + -3.1 2,213,295 + -0.3 2,213,295 + +0.1 2,213,345 + -0.7 2,213,363 + -0.8 2,213,365 + +2.2 2,213,365 + -0.7 2,213,365 + +1.4 2,213,365 + -2.9 2,213,401 + -1.0 2,213,401 + -1.6 2,213,401 + -1.3 2,216,010 + -1.4 2,216,010 + -1.4 2,216,010 + +1.0 2,216,011 - -1.2 2,216,011 - +0.8 2,216,011 - -0.2 2,216,060 - -0.8 2,216,060 - +1.7 2,216,225 + Pf1N1B4_1936 0.28 -0.4 2,216,226 - Pf1N1B4_1936 0.28 +0.3 2,216,226 - Pf1N1B4_1936 0.28 +1.3 2,216,322 + Pf1N1B4_1936 0.40 -0.3
Or see this region's nucleotide sequence