Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1932

Experiment: carbon source Sucrose 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1930 and Pf1N1B4_1931 overlap by 20 nucleotidesPf1N1B4_1931 and Pf1N1B4_1932 are separated by 240 nucleotidesPf1N1B4_1932 and Pf1N1B4_1933 are separated by 79 nucleotides Pf1N1B4_1930 - LSU ribosomal protein L34p, at 2,208,958 to 2,209,092 _1930 Pf1N1B4_1931 - Ribonuclease P protein component (EC 3.1.26.5), at 2,209,073 to 2,209,510 _1931 Pf1N1B4_1932 - Inner membrane protein translocase component YidC, long form, at 2,209,751 to 2,211,439 _1932 Pf1N1B4_1933 - GTPase and tRNA-U34 5-formylation enzyme TrmE, at 2,211,519 to 2,212,889 _1933 Position (kb) 2209 2210 2211 2212Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2208.791 kb on + strandat 2208.797 kb on + strandat 2208.799 kb on + strandat 2208.841 kb on + strandat 2208.841 kb on + strandat 2208.845 kb on + strandat 2208.845 kb on + strandat 2208.845 kb on + strandat 2208.847 kb on + strandat 2209.615 kb on + strandat 2211.403 kb on + strandat 2211.437 kb on + strandat 2211.442 kb on + strandat 2211.442 kb on + strandat 2211.442 kb on + strandat 2211.442 kb on + strandat 2211.442 kb on + strandat 2211.442 kb on + strandat 2211.442 kb on + strandat 2211.489 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 1mM
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2,208,791 + -2.2
2,208,797 + -0.9
2,208,799 + +2.1
2,208,841 + +0.8
2,208,841 + -0.5
2,208,845 + +2.8
2,208,845 + -1.0
2,208,845 + +2.9
2,208,847 + +0.4
2,209,615 + -1.7
2,211,403 + -0.3
2,211,437 + -3.4
2,211,442 + +0.7
2,211,442 + -1.2
2,211,442 + -2.1
2,211,442 + -0.7
2,211,442 + +1.4
2,211,442 + -0.8
2,211,442 + -1.2
2,211,489 + -0.5

Or see this region's nucleotide sequence