Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1888

Experiment: carbon source Sucrose 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source Sucrose 1mM
2,159,106	-				-0.6
2,159,127	+				-1.7
2,159,127	+				-0.6
2,159,127	+				-0.9
2,159,127	+				-0.9
2,159,127	+				-0.9
2,159,127	+				+1.0
2,159,128	-				+2.9
2,159,128	-				+1.6
2,159,128	-				-0.4
2,159,128	-				-0.9
2,159,128	-				-0.8
2,159,128	-				+3.4
2,159,131	+				+0.3
2,159,131	+				-1.0
2,159,131	+				+0.7
2,159,131	+				+0.4
2,159,131	+				-0.0
2,159,131	+				+1.4
2,159,131	+				-2.0
2,159,131	+				+0.7
2,159,131	+				-2.7
2,159,131	+				-0.9
2,159,131	+				-0.1
2,159,131	+				-1.6
2,159,131	+				-1.6
2,159,131	+				+2.0
2,159,131	+				-1.1
2,159,132	-				-0.5
2,159,132	-				-2.2
2,159,203	+		Pf1N1B4_1887	0.30	-2.1
2,159,203	+		Pf1N1B4_1887	0.30	-1.2
2,159,263	+		Pf1N1B4_1887	0.66	+0.8
2,159,263	+		Pf1N1B4_1887	0.66	+0.3
2,159,263	+		Pf1N1B4_1887	0.66	-0.9
2,159,263	+		Pf1N1B4_1887	0.66	-1.1
2,159,263	+		Pf1N1B4_1887	0.66	-1.1
2,159,263	+		Pf1N1B4_1887	0.66	-0.1
2,159,378	+				-0.9
2,159,378	+				-0.4
2,159,378	+				-0.4
2,159,378	+				+1.1
2,159,378	+				+1.2
2,159,410	+				-0.4
2,159,410	+				-0.3
2,159,410	+				+1.2
2,159,410	+				-1.7
2,159,513	+				+0.6
2,159,513	+				-2.7
2,159,514	-				+0.5
2,159,520	-				-1.8
2,159,528	+				-2.4
2,159,529	-				-1.8
2,159,529	-				+1.7
2,159,631	+				+0.7
2,159,632	-				-1.6
2,159,662	+				+2.2
2,159,662	+				-2.1
2,159,662	+				-1.0
2,159,663	-				-2.5
2,159,663	-				-0.1
2,159,703	+				-1.0
2,159,703	+				-0.1
2,159,703	+				+0.5
2,159,703	+				+0.9
2,159,703	+				-0.1
2,159,704	-				-3.8
2,159,704	-				-0.6
2,159,704	-				+2.7
2,159,704	-				-1.0
2,159,717	+				+0.7
2,159,717	+				-1.3
2,159,723	+				-1.1
2,159,724	-				-0.2
2,159,754	-				+2.1
2,159,781	+				-0.3
2,159,816	-				-1.3
2,159,824	+				+0.7
2,159,824	+				-2.2
2,159,824	+				+0.4
2,159,825	-				-1.8
2,159,825	-				-2.2
2,159,825	-				-0.9
2,159,825	-				-1.3
2,159,825	-				-1.0
2,159,899	+				-2.3
2,159,945	+				+1.8
2,159,976	+				+2.3
2,159,976	+				-0.6
2,159,976	+				+1.5
2,159,976	+				-0.5
2,159,976	+				-1.1
2,159,976	+				+1.6
2,159,977	-				+3.0
2,159,977	-				-1.9
2,159,977	-				-1.0
2,159,999	+				-1.6
2,159,999	+				+1.7
2,160,000	-				-3.3
2,160,000	-				-1.1
2,160,000	-				-1.7
2,160,001	+				-0.7
2,160,073	+				-2.5
2,160,074	-				-2.4
2,160,074	-				+0.9
2,160,079	+				-0.9
2,160,080	-				-0.9
2,160,085	+				-2.1
2,160,085	+				+1.3
2,160,086	-				+1.8
2,160,086	-				+2.1
2,160,086	-				-1.5
2,160,103	+				-0.1
2,160,103	+				-1.0
2,160,205	-				-0.1
2,160,223	+		Pf1N1B4_1888	0.10	-1.0
2,160,344	+		Pf1N1B4_1888	0.19	+3.0
2,160,344	+		Pf1N1B4_1888	0.19	+2.1
2,160,344	+		Pf1N1B4_1888	0.19	+0.3
2,160,344	+		Pf1N1B4_1888	0.19	-0.8
2,160,345	-		Pf1N1B4_1888	0.19	-2.4
2,160,345	-		Pf1N1B4_1888	0.19	-2.5
2,160,449	-		Pf1N1B4_1888	0.27	-1.7
2,160,458	+		Pf1N1B4_1888	0.28	-0.7
2,160,459	-		Pf1N1B4_1888	0.28	-0.3
2,160,698	+		Pf1N1B4_1888	0.46	-1.9
2,160,698	+				-0.3
2,160,699	-		Pf1N1B4_1888	0.46	-1.4
2,160,794	+		Pf1N1B4_1888	0.53	-0.7
2,160,794	+		Pf1N1B4_1888	0.53	-2.3
2,160,794	+		Pf1N1B4_1888	0.53	-1.0
2,160,794	+		Pf1N1B4_1888	0.53	-0.9
2,160,794	+		Pf1N1B4_1888	0.53	-2.6
2,160,794	+		Pf1N1B4_1888	0.53	-1.4
2,160,795	-		Pf1N1B4_1888	0.53	-0.3
2,160,795	-		Pf1N1B4_1888	0.53	-1.0
2,160,898	-				+2.7
2,161,038	-		Pf1N1B4_1888	0.71	-0.9
2,161,074	-		Pf1N1B4_1888	0.74	-1.5
2,161,321	+				+0.1
2,161,321	+				-0.5
2,161,321	+				-0.7
2,161,321	+				-2.2
2,161,322	-				-0.3
2,161,322	-				+0.7
2,161,322	-				+1.5
2,161,322	-				-1.9
2,161,322	-				-0.8
2,161,322	-				-1.5
2,161,325	+				-1.4
2,161,325	+				-0.7
2,161,325	+				+0.7
2,161,326	-				+1.9
2,161,326	-				-1.3
2,161,326	-				-1.9
2,161,326	-				-1.9
2,161,326	-				+0.8
2,161,536	+				-0.9
2,161,536	+				-2.2
2,161,539	+				-1.5
2,161,540	-				-1.8
2,161,540	-				-1.9
2,161,581	-				+3.0
2,161,589	-				-3.0
2,161,627	+				+4.0
2,161,628	-				+2.3
2,161,628	-				+4.5
2,162,004	+		Pf1N1B4_1889	0.31	+3.1
2,162,004	+		Pf1N1B4_1889	0.31	+4.2
2,162,004	+		Pf1N1B4_1889	0.31	+3.5
2,162,004	+		Pf1N1B4_1889	0.31	+4.0
2,162,004	+		Pf1N1B4_1889	0.31	+2.8
2,162,004	+		Pf1N1B4_1889	0.31	+1.3
2,162,004	+		Pf1N1B4_1889	0.31	+4.0
2,162,004	+		Pf1N1B4_1889	0.31	+5.0
2,162,004	+		Pf1N1B4_1889	0.31	+4.7
2,162,005	-		Pf1N1B4_1889	0.31	+3.3
2,162,005	-		Pf1N1B4_1889	0.31	+1.1
2,162,005	-		Pf1N1B4_1889	0.31	+1.7
2,162,005	-		Pf1N1B4_1889	0.31	-1.7
2,162,005	-		Pf1N1B4_1889	0.31	+4.2
2,162,005	-		Pf1N1B4_1889	0.31	+3.3
2,162,005	-		Pf1N1B4_1889	0.31	+3.5
2,162,005	-		Pf1N1B4_1889	0.31	+3.4
2,162,055	+		Pf1N1B4_1889	0.35	+4.5
2,162,055	+		Pf1N1B4_1889	0.35	+4.4
2,162,055	+		Pf1N1B4_1889	0.35	+4.1
2,162,056	-		Pf1N1B4_1889	0.35	+6.0
2,162,056	-		Pf1N1B4_1889	0.35	+5.6
2,162,056	-		Pf1N1B4_1889	0.35	+3.4
2,162,056	-		Pf1N1B4_1889	0.35	+2.1
2,162,056	-		Pf1N1B4_1889	0.35	+3.5
2,162,056	-		Pf1N1B4_1889	0.35	+3.8
2,162,099	+		Pf1N1B4_1889	0.39	+3.5
2,162,099	+		Pf1N1B4_1889	0.39	+3.4
2,162,099	+		Pf1N1B4_1889	0.39	+4.3
2,162,099	+		Pf1N1B4_1889	0.39	+4.3
2,162,099	+		Pf1N1B4_1889	0.39	+2.8
2,162,100	-		Pf1N1B4_1889	0.39	+4.9
2,162,100	-		Pf1N1B4_1889	0.39	+3.1
2,162,240	+		Pf1N1B4_1889	0.50	+4.1
2,162,240	+		Pf1N1B4_1889	0.50	+1.6
2,162,241	-		Pf1N1B4_1889	0.50	+3.9
2,162,241	-		Pf1N1B4_1889	0.50	+3.9
2,162,241	-		Pf1N1B4_1889	0.50	+4.4
2,162,241	-		Pf1N1B4_1889	0.50	+0.8
2,162,385	+		Pf1N1B4_1889	0.62	+4.3
2,162,385	+		Pf1N1B4_1889	0.62	+4.0
2,162,386	-		Pf1N1B4_1889	0.62	+4.4
2,162,386	-		Pf1N1B4_1889	0.62	+3.8
2,162,402	+		Pf1N1B4_1889	0.63	+4.5
2,162,402	+		Pf1N1B4_1889	0.63	+4.2
2,162,403	-		Pf1N1B4_1889	0.63	+2.6
2,162,403	-		Pf1N1B4_1889	0.63	+3.7