Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS10885

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS10875 and RALBFv3_RS10880 are separated by 210 nucleotidesRALBFv3_RS10880 and RALBFv3_RS10885 are separated by 140 nucleotidesRALBFv3_RS10885 and RALBFv3_RS10890 are separated by 66 nucleotidesRALBFv3_RS10890 and RALBFv3_RS10895 are separated by 70 nucleotides RALBFv3_RS10875: RALBFv3_RS10875 - phosphoenolpyruvate--protein phosphotransferase, at 2,407,961 to 2,409,721 _RS10875 RALBFv3_RS10880: RALBFv3_RS10880 - (2Fe-2S)-binding protein, at 2,409,932 to 2,410,207 _RS10880 RALBFv3_RS10885: RALBFv3_RS10885 - bacterioferritin, at 2,410,348 to 2,410,827 _RS10885 RALBFv3_RS10890: RALBFv3_RS10890 - molybdopterin-synthase adenylyltransferase MoeB, at 2,410,894 to 2,411,643 _RS10890 RALBFv3_RS10895: RALBFv3_RS10895 - S41 family peptidase, at 2,411,714 to 2,413,330 _RS10895 Position (kb) 2410 2411Strain fitness (log2 ratio) -1 0 1at 2409.776 kb on - strandat 2410.360 kb on - strandat 2410.360 kb on - strandat 2410.421 kb on - strand, within RALBFv3_RS10885at 2410.480 kb on + strand, within RALBFv3_RS10885at 2410.480 kb on + strand, within RALBFv3_RS10885at 2410.480 kb on + strand, within RALBFv3_RS10885at 2410.792 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
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2,409,776 - -0.4
2,410,360 - -0.7
2,410,360 - +0.7
2,410,421 - RALBFv3_RS10885 0.15 -1.5
2,410,480 + RALBFv3_RS10885 0.28 +0.7
2,410,480 + RALBFv3_RS10885 0.28 -0.8
2,410,480 + RALBFv3_RS10885 0.28 +0.3
2,410,792 + -0.5

Or see this region's nucleotide sequence