Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS08535

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS08530 and RALBFv3_RS08535 are separated by 19 nucleotidesRALBFv3_RS08535 and RALBFv3_RS08540 overlap by 4 nucleotides RALBFv3_RS08530: RALBFv3_RS08530 - peptidase M20, at 1,877,270 to 1,878,544 _RS08530 RALBFv3_RS08535: RALBFv3_RS08535 - ureidoglycolate lyase, at 1,878,564 to 1,879,106 _RS08535 RALBFv3_RS08540: RALBFv3_RS08540 - allantoicase, at 1,879,103 to 1,880,113 _RS08540 Position (kb) 1878 1879 1880Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1877.805 kb on + strand, within RALBFv3_RS08530at 1877.805 kb on + strand, within RALBFv3_RS08530at 1877.805 kb on + strand, within RALBFv3_RS08530at 1877.805 kb on + strand, within RALBFv3_RS08530at 1877.805 kb on + strand, within RALBFv3_RS08530at 1877.805 kb on + strand, within RALBFv3_RS08530at 1877.805 kb on + strand, within RALBFv3_RS08530at 1877.806 kb on - strand, within RALBFv3_RS08530at 1877.806 kb on - strand, within RALBFv3_RS08530at 1877.806 kb on - strand, within RALBFv3_RS08530at 1877.806 kb on - strand, within RALBFv3_RS08530at 1877.806 kb on - strand, within RALBFv3_RS08530at 1877.806 kb on - strand, within RALBFv3_RS08530at 1877.806 kb on - strand, within RALBFv3_RS08530at 1877.962 kb on - strand, within RALBFv3_RS08530at 1877.962 kb on - strand, within RALBFv3_RS08530at 1878.029 kb on + strand, within RALBFv3_RS08530at 1878.031 kb on - strand, within RALBFv3_RS08530at 1878.031 kb on - strand, within RALBFv3_RS08530at 1878.111 kb on + strand, within RALBFv3_RS08530at 1878.111 kb on + strand, within RALBFv3_RS08530at 1878.111 kb on + strand, within RALBFv3_RS08530at 1878.111 kb on + strand, within RALBFv3_RS08530at 1878.112 kb on - strand, within RALBFv3_RS08530at 1878.112 kb on - strand, within RALBFv3_RS08530at 1878.112 kb on - strand, within RALBFv3_RS08530at 1878.112 kb on - strand, within RALBFv3_RS08530at 1878.112 kb on - strand, within RALBFv3_RS08530at 1878.112 kb on - strand, within RALBFv3_RS08530at 1878.168 kb on + strand, within RALBFv3_RS08530at 1878.195 kb on + strand, within RALBFv3_RS08530at 1878.195 kb on + strand, within RALBFv3_RS08530at 1878.725 kb on - strand, within RALBFv3_RS08535at 1878.725 kb on - strand, within RALBFv3_RS08535at 1878.808 kb on + strand, within RALBFv3_RS08535at 1878.809 kb on - strand, within RALBFv3_RS08535at 1879.206 kb on + strand, within RALBFv3_RS08540at 1879.207 kb on - strand, within RALBFv3_RS08540at 1879.209 kb on + strand, within RALBFv3_RS08540at 1879.209 kb on + strand, within RALBFv3_RS08540at 1879.209 kb on + strand, within RALBFv3_RS08540at 1879.210 kb on - strand, within RALBFv3_RS08540at 1879.210 kb on - strand, within RALBFv3_RS08540at 1879.530 kb on + strand, within RALBFv3_RS08540at 1879.531 kb on - strand, within RALBFv3_RS08540at 1879.531 kb on - strand, within RALBFv3_RS08540at 1879.609 kb on - strand, within RALBFv3_RS08540at 1879.609 kb on - strand, within RALBFv3_RS08540at 1879.642 kb on - strand, within RALBFv3_RS08540at 1879.665 kb on + strand, within RALBFv3_RS08540at 1879.665 kb on + strand, within RALBFv3_RS08540at 1879.665 kb on + strand, within RALBFv3_RS08540at 1879.665 kb on + strand, within RALBFv3_RS08540at 1879.665 kb on + strand, within RALBFv3_RS08540at 1879.665 kb on + strand, within RALBFv3_RS08540at 1879.666 kb on - strand, within RALBFv3_RS08540at 1879.666 kb on - strand, within RALBFv3_RS08540at 1879.692 kb on + strand, within RALBFv3_RS08540at 1879.692 kb on + strand, within RALBFv3_RS08540at 1879.692 kb on + strand, within RALBFv3_RS08540at 1879.693 kb on - strand, within RALBFv3_RS08540at 1879.946 kb on + strand, within RALBFv3_RS08540at 1879.947 kb on + strand, within RALBFv3_RS08540at 1879.948 kb on - strand, within RALBFv3_RS08540

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
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1,877,805 + RALBFv3_RS08530 0.42 -0.1
1,877,805 + RALBFv3_RS08530 0.42 +0.2
1,877,805 + RALBFv3_RS08530 0.42 +2.8
1,877,805 + RALBFv3_RS08530 0.42 -0.1
1,877,805 + RALBFv3_RS08530 0.42 +0.4
1,877,805 + RALBFv3_RS08530 0.42 +0.0
1,877,805 + RALBFv3_RS08530 0.42 +1.2
1,877,806 - RALBFv3_RS08530 0.42 -0.0
1,877,806 - RALBFv3_RS08530 0.42 +0.4
1,877,806 - RALBFv3_RS08530 0.42 -2.0
1,877,806 - RALBFv3_RS08530 0.42 +0.4
1,877,806 - RALBFv3_RS08530 0.42 +1.0
1,877,806 - RALBFv3_RS08530 0.42 +0.0
1,877,806 - RALBFv3_RS08530 0.42 -2.1
1,877,962 - RALBFv3_RS08530 0.54 -0.0
1,877,962 - RALBFv3_RS08530 0.54 +0.1
1,878,029 + RALBFv3_RS08530 0.60 -0.3
1,878,031 - RALBFv3_RS08530 0.60 -0.7
1,878,031 - RALBFv3_RS08530 0.60 -1.3
1,878,111 + RALBFv3_RS08530 0.66 -2.2
1,878,111 + RALBFv3_RS08530 0.66 +0.4
1,878,111 + RALBFv3_RS08530 0.66 -0.1
1,878,111 + RALBFv3_RS08530 0.66 +3.0
1,878,112 - RALBFv3_RS08530 0.66 -1.0
1,878,112 - RALBFv3_RS08530 0.66 -0.3
1,878,112 - RALBFv3_RS08530 0.66 +0.4
1,878,112 - RALBFv3_RS08530 0.66 -4.2
1,878,112 - RALBFv3_RS08530 0.66 +1.6
1,878,112 - RALBFv3_RS08530 0.66 -0.1
1,878,168 + RALBFv3_RS08530 0.70 -1.3
1,878,195 + RALBFv3_RS08530 0.73 -0.8
1,878,195 + RALBFv3_RS08530 0.73 +1.4
1,878,725 - RALBFv3_RS08535 0.30 -1.9
1,878,725 - RALBFv3_RS08535 0.30 -1.4
1,878,808 + RALBFv3_RS08535 0.45 +0.4
1,878,809 - RALBFv3_RS08535 0.45 -1.1
1,879,206 + RALBFv3_RS08540 0.10 -2.5
1,879,207 - RALBFv3_RS08540 0.10 +0.4
1,879,209 + RALBFv3_RS08540 0.10 -2.1
1,879,209 + RALBFv3_RS08540 0.10 -1.7
1,879,209 + RALBFv3_RS08540 0.10 -1.2
1,879,210 - RALBFv3_RS08540 0.11 +2.0
1,879,210 - RALBFv3_RS08540 0.11 +0.1
1,879,530 + RALBFv3_RS08540 0.42 +0.4
1,879,531 - RALBFv3_RS08540 0.42 -1.2
1,879,531 - RALBFv3_RS08540 0.42 -1.6
1,879,609 - RALBFv3_RS08540 0.50 -1.1
1,879,609 - RALBFv3_RS08540 0.50 -0.1
1,879,642 - RALBFv3_RS08540 0.53 -4.0
1,879,665 + RALBFv3_RS08540 0.56 -2.2
1,879,665 + RALBFv3_RS08540 0.56 -1.7
1,879,665 + RALBFv3_RS08540 0.56 -2.6
1,879,665 + RALBFv3_RS08540 0.56 -2.3
1,879,665 + RALBFv3_RS08540 0.56 +0.4
1,879,665 + RALBFv3_RS08540 0.56 -1.5
1,879,666 - RALBFv3_RS08540 0.56 -0.5
1,879,666 - RALBFv3_RS08540 0.56 -2.0
1,879,692 + RALBFv3_RS08540 0.58 -1.5
1,879,692 + RALBFv3_RS08540 0.58 -3.7
1,879,692 + RALBFv3_RS08540 0.58 -1.5
1,879,693 - RALBFv3_RS08540 0.58 -2.3
1,879,946 + RALBFv3_RS08540 0.83 -1.6
1,879,947 + RALBFv3_RS08540 0.83 -2.6
1,879,948 - RALBFv3_RS08540 0.84 -0.9

Or see this region's nucleotide sequence