Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS05770 and RALBFv3_RS05775 are separated by 70 nucleotides RALBFv3_RS05775 and RALBFv3_RS05780 are separated by 72 nucleotides RALBFv3_RS05780 and RALBFv3_RS05785 overlap by 4 nucleotides
RALBFv3_RS05770: RALBFv3_RS05770 - NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha, at 1,284,356 to 1,285,495
_RS05770
RALBFv3_RS05775: RALBFv3_RS05775 - aspartate 1-decarboxylase, at 1,285,566 to 1,285,928
_RS05775
RALBFv3_RS05780: RALBFv3_RS05780 - NAD(P) transhydrogenase subunit alpha, at 1,286,001 to 1,286,321
_RS05780
RALBFv3_RS05785: RALBFv3_RS05785 - NAD(P) transhydrogenase subunit beta, at 1,286,318 to 1,287,775
_RS05785
Position (kb) 1285
1286 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1284.732 kb on + strand, within RALBFv3_RS05770 at 1284.732 kb on + strand, within RALBFv3_RS05770 at 1284.732 kb on + strand, within RALBFv3_RS05770 at 1284.733 kb on - strand, within RALBFv3_RS05770 at 1284.733 kb on - strand, within RALBFv3_RS05770 at 1284.733 kb on - strand, within RALBFv3_RS05770 at 1284.768 kb on - strand, within RALBFv3_RS05770 at 1285.043 kb on + strand, within RALBFv3_RS05770 at 1285.043 kb on + strand, within RALBFv3_RS05770 at 1285.043 kb on + strand, within RALBFv3_RS05770 at 1285.044 kb on - strand, within RALBFv3_RS05770 at 1285.343 kb on + strand, within RALBFv3_RS05770 at 1285.343 kb on + strand, within RALBFv3_RS05770 at 1285.356 kb on + strand, within RALBFv3_RS05770 at 1285.384 kb on + strand at 1285.493 kb on + strand at 1285.577 kb on + strand at 1285.630 kb on - strand, within RALBFv3_RS05775 at 1285.705 kb on - strand, within RALBFv3_RS05775 at 1285.737 kb on + strand, within RALBFv3_RS05775 at 1285.737 kb on + strand, within RALBFv3_RS05775 at 1285.738 kb on - strand, within RALBFv3_RS05775 at 1285.830 kb on - strand, within RALBFv3_RS05775 at 1285.830 kb on - strand, within RALBFv3_RS05775 at 1285.833 kb on + strand, within RALBFv3_RS05775 at 1286.055 kb on + strand, within RALBFv3_RS05780 at 1286.056 kb on - strand, within RALBFv3_RS05780 at 1286.099 kb on + strand, within RALBFv3_RS05780 at 1286.100 kb on - strand, within RALBFv3_RS05780 at 1286.345 kb on + strand at 1286.345 kb on + strand at 1286.345 kb on + strand at 1286.346 kb on - strand at 1286.421 kb on + strand at 1286.421 kb on + strand at 1286.577 kb on - strand, within RALBFv3_RS05785 at 1286.822 kb on + strand, within RALBFv3_RS05785 at 1286.823 kb on - strand, within RALBFv3_RS05785 at 1286.854 kb on - strand, within RALBFv3_RS05785
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days remove 1,284,732 + RALBFv3_RS05770 0.33 +0.5 1,284,732 + RALBFv3_RS05770 0.33 -0.3 1,284,732 + RALBFv3_RS05770 0.33 -0.6 1,284,733 - RALBFv3_RS05770 0.33 -0.2 1,284,733 - RALBFv3_RS05770 0.33 -0.4 1,284,733 - RALBFv3_RS05770 0.33 +0.2 1,284,768 - RALBFv3_RS05770 0.36 -2.9 1,285,043 + RALBFv3_RS05770 0.60 -1.3 1,285,043 + RALBFv3_RS05770 0.60 +0.5 1,285,043 + RALBFv3_RS05770 0.60 +0.4 1,285,044 - RALBFv3_RS05770 0.60 +0.1 1,285,343 + RALBFv3_RS05770 0.87 -0.2 1,285,343 + RALBFv3_RS05770 0.87 -1.4 1,285,356 + RALBFv3_RS05770 0.88 +0.9 1,285,384 + -0.3 1,285,493 + +1.3 1,285,577 + +0.7 1,285,630 - RALBFv3_RS05775 0.18 -2.1 1,285,705 - RALBFv3_RS05775 0.38 -1.9 1,285,737 + RALBFv3_RS05775 0.47 -0.3 1,285,737 + RALBFv3_RS05775 0.47 +1.3 1,285,738 - RALBFv3_RS05775 0.47 -0.5 1,285,830 - RALBFv3_RS05775 0.73 -0.6 1,285,830 - RALBFv3_RS05775 0.73 -0.4 1,285,833 + RALBFv3_RS05775 0.74 -1.3 1,286,055 + RALBFv3_RS05780 0.17 +0.2 1,286,056 - RALBFv3_RS05780 0.17 -0.1 1,286,099 + RALBFv3_RS05780 0.31 +0.7 1,286,100 - RALBFv3_RS05780 0.31 -0.1 1,286,345 + +0.7 1,286,345 + +0.6 1,286,345 + +1.4 1,286,346 - +0.3 1,286,421 + +0.5 1,286,421 + +0.7 1,286,577 - RALBFv3_RS05785 0.18 -0.7 1,286,822 + RALBFv3_RS05785 0.35 +1.0 1,286,823 - RALBFv3_RS05785 0.35 +1.3 1,286,854 - RALBFv3_RS05785 0.37 +0.9
Or see this region's nucleotide sequence