Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03135 and RALBFv3_RS03140 are separated by 217 nucleotides RALBFv3_RS03140 and RALBFv3_RS03145 are separated by 23 nucleotides
RALBFv3_RS03135: RALBFv3_RS03135 - LysR family transcriptional regulator, at 685,916 to 686,860
_RS03135
RALBFv3_RS03140: RALBFv3_RS03140 - xanthine dehydrogenase small subunit, at 687,078 to 688,613
_RS03140
RALBFv3_RS03145: RALBFv3_RS03145 - xanthine dehydrogenase molybdopterin binding subunit, at 688,637 to 691,003
_RS03145
Position (kb) 687
688
689 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 686.085 kb on + strand, within RALBFv3_RS03135 at 686.085 kb on + strand, within RALBFv3_RS03135 at 686.085 kb on + strand, within RALBFv3_RS03135 at 686.085 kb on + strand, within RALBFv3_RS03135 at 686.086 kb on - strand, within RALBFv3_RS03135 at 686.250 kb on + strand, within RALBFv3_RS03135 at 686.250 kb on + strand, within RALBFv3_RS03135 at 686.251 kb on - strand, within RALBFv3_RS03135 at 686.252 kb on - strand, within RALBFv3_RS03135 at 686.283 kb on + strand, within RALBFv3_RS03135 at 686.815 kb on - strand at 686.832 kb on + strand at 686.832 kb on + strand at 686.833 kb on - strand at 686.833 kb on - strand at 686.926 kb on - strand at 686.926 kb on - strand at 686.926 kb on - strand at 686.926 kb on - strand at 687.038 kb on - strand at 687.048 kb on + strand at 687.162 kb on + strand at 687.163 kb on - strand at 687.456 kb on + strand, within RALBFv3_RS03140 at 687.585 kb on + strand, within RALBFv3_RS03140 at 687.585 kb on + strand, within RALBFv3_RS03140 at 687.586 kb on - strand, within RALBFv3_RS03140 at 687.586 kb on - strand, within RALBFv3_RS03140 at 687.670 kb on - strand, within RALBFv3_RS03140 at 687.705 kb on + strand, within RALBFv3_RS03140 at 687.834 kb on + strand, within RALBFv3_RS03140 at 687.835 kb on - strand, within RALBFv3_RS03140 at 687.835 kb on - strand, within RALBFv3_RS03140 at 687.859 kb on - strand, within RALBFv3_RS03140 at 687.921 kb on + strand, within RALBFv3_RS03140 at 688.002 kb on - strand, within RALBFv3_RS03140 at 688.128 kb on + strand, within RALBFv3_RS03140 at 688.128 kb on + strand, within RALBFv3_RS03140 at 688.128 kb on + strand, within RALBFv3_RS03140 at 688.137 kb on + strand, within RALBFv3_RS03140 at 688.138 kb on - strand, within RALBFv3_RS03140 at 688.227 kb on + strand, within RALBFv3_RS03140 at 688.227 kb on + strand, within RALBFv3_RS03140 at 688.228 kb on - strand, within RALBFv3_RS03140 at 688.318 kb on + strand, within RALBFv3_RS03140 at 688.319 kb on - strand, within RALBFv3_RS03140 at 688.512 kb on - strand at 688.773 kb on - strand at 688.773 kb on - strand at 688.985 kb on + strand, within RALBFv3_RS03145 at 688.986 kb on - strand, within RALBFv3_RS03145 at 689.229 kb on - strand, within RALBFv3_RS03145 at 689.249 kb on + strand, within RALBFv3_RS03145 at 689.250 kb on - strand, within RALBFv3_RS03145
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days remove 686,085 + RALBFv3_RS03135 0.18 -1.2 686,085 + RALBFv3_RS03135 0.18 -3.2 686,085 + RALBFv3_RS03135 0.18 -0.1 686,085 + RALBFv3_RS03135 0.18 +0.1 686,086 - RALBFv3_RS03135 0.18 -1.8 686,250 + RALBFv3_RS03135 0.35 -1.1 686,250 + RALBFv3_RS03135 0.35 -1.6 686,251 - RALBFv3_RS03135 0.35 -0.1 686,252 - RALBFv3_RS03135 0.36 +0.2 686,283 + RALBFv3_RS03135 0.39 +0.3 686,815 - +0.8 686,832 + -0.2 686,832 + +2.8 686,833 - -0.5 686,833 - -0.9 686,926 - +0.1 686,926 - -0.3 686,926 - -0.1 686,926 - +1.1 687,038 - -2.2 687,048 + -0.7 687,162 + -0.4 687,163 - -2.9 687,456 + RALBFv3_RS03140 0.25 +0.4 687,585 + RALBFv3_RS03140 0.33 -3.1 687,585 + RALBFv3_RS03140 0.33 -2.9 687,586 - RALBFv3_RS03140 0.33 +0.0 687,586 - RALBFv3_RS03140 0.33 -2.7 687,670 - RALBFv3_RS03140 0.39 -2.6 687,705 + RALBFv3_RS03140 0.41 -0.2 687,834 + RALBFv3_RS03140 0.49 -0.3 687,835 - RALBFv3_RS03140 0.49 -2.2 687,835 - RALBFv3_RS03140 0.49 -3.5 687,859 - RALBFv3_RS03140 0.51 -2.8 687,921 + RALBFv3_RS03140 0.55 -3.6 688,002 - RALBFv3_RS03140 0.60 -4.6 688,128 + RALBFv3_RS03140 0.68 -1.8 688,128 + RALBFv3_RS03140 0.68 -3.6 688,128 + RALBFv3_RS03140 0.68 -2.1 688,137 + RALBFv3_RS03140 0.69 -2.0 688,138 - RALBFv3_RS03140 0.69 -2.7 688,227 + RALBFv3_RS03140 0.75 -2.3 688,227 + RALBFv3_RS03140 0.75 +0.8 688,228 - RALBFv3_RS03140 0.75 -2.2 688,318 + RALBFv3_RS03140 0.81 -2.2 688,319 - RALBFv3_RS03140 0.81 -3.0 688,512 - -2.9 688,773 - +0.8 688,773 - -0.2 688,985 + RALBFv3_RS03145 0.15 -1.6 688,986 - RALBFv3_RS03145 0.15 +0.8 689,229 - RALBFv3_RS03145 0.25 -1.6 689,249 + RALBFv3_RS03145 0.26 -1.4 689,250 - RALBFv3_RS03145 0.26 -1.9
Or see this region's nucleotide sequence