Experiment: nitrogen source nitrite 0.1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_540 and Pf1N1B4_541 are separated by 500 nucleotides Pf1N1B4_541 and Pf1N1B4_542 are separated by 106 nucleotides Pf1N1B4_542 and Pf1N1B4_543 are separated by 136 nucleotides
Pf1N1B4_540 - FIG00960825: hypothetical protein, at 637,936 to 638,670
_540
Pf1N1B4_541 - hypothetical protein, at 639,171 to 639,431
_541
Pf1N1B4_542 - FIG00953856: hypothetical protein, at 639,538 to 639,813
_542
Pf1N1B4_543 - ATP-dependent RNA helicase SrmB, at 639,950 to 641,296
_543
Position (kb) 639
640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 638.368 kb on + strand, within Pf1N1B4_540 at 638.369 kb on - strand, within Pf1N1B4_540 at 638.369 kb on - strand at 638.369 kb on - strand, within Pf1N1B4_540 at 638.369 kb on - strand, within Pf1N1B4_540 at 638.369 kb on - strand, within Pf1N1B4_540 at 638.369 kb on - strand, within Pf1N1B4_540 at 638.418 kb on + strand, within Pf1N1B4_540 at 638.418 kb on + strand, within Pf1N1B4_540 at 638.419 kb on - strand, within Pf1N1B4_540 at 638.419 kb on - strand, within Pf1N1B4_540 at 638.419 kb on - strand, within Pf1N1B4_540 at 638.419 kb on - strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.429 kb on - strand, within Pf1N1B4_540 at 638.429 kb on - strand, within Pf1N1B4_540 at 638.512 kb on + strand, within Pf1N1B4_540 at 638.512 kb on + strand, within Pf1N1B4_540 at 638.512 kb on + strand, within Pf1N1B4_540 at 638.512 kb on + strand, within Pf1N1B4_540 at 638.512 kb on + strand, within Pf1N1B4_540 at 638.512 kb on + strand, within Pf1N1B4_540 at 638.512 kb on + strand, within Pf1N1B4_540 at 638.512 kb on + strand, within Pf1N1B4_540 at 638.513 kb on - strand at 638.513 kb on - strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.554 kb on + strand, within Pf1N1B4_540 at 638.554 kb on + strand, within Pf1N1B4_540 at 638.554 kb on + strand, within Pf1N1B4_540 at 638.554 kb on + strand, within Pf1N1B4_540 at 638.554 kb on + strand, within Pf1N1B4_540 at 638.555 kb on - strand, within Pf1N1B4_540 at 638.555 kb on - strand, within Pf1N1B4_540 at 638.555 kb on - strand, within Pf1N1B4_540 at 638.555 kb on - strand, within Pf1N1B4_540 at 638.555 kb on - strand, within Pf1N1B4_540 at 638.560 kb on + strand, within Pf1N1B4_540 at 638.560 kb on + strand, within Pf1N1B4_540 at 638.560 kb on + strand, within Pf1N1B4_540 at 638.560 kb on + strand at 638.560 kb on + strand, within Pf1N1B4_540 at 638.561 kb on - strand, within Pf1N1B4_540 at 638.561 kb on - strand, within Pf1N1B4_540 at 638.561 kb on - strand, within Pf1N1B4_540 at 638.587 kb on - strand at 638.669 kb on - strand at 638.669 kb on - strand at 638.748 kb on - strand at 638.824 kb on + strand at 638.824 kb on + strand at 638.824 kb on + strand at 638.824 kb on + strand at 638.824 kb on + strand at 638.824 kb on + strand at 638.825 kb on - strand at 638.825 kb on - strand at 638.825 kb on - strand at 638.857 kb on + strand at 638.857 kb on + strand at 638.857 kb on + strand at 638.857 kb on + strand at 638.857 kb on + strand at 638.858 kb on - strand at 638.858 kb on - strand at 638.858 kb on - strand at 638.858 kb on - strand at 638.858 kb on - strand at 638.867 kb on - strand at 638.867 kb on - strand at 638.867 kb on - strand at 638.915 kb on + strand at 638.915 kb on + strand at 638.915 kb on + strand at 638.915 kb on + strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.917 kb on + strand at 638.917 kb on + strand at 638.917 kb on + strand at 638.917 kb on + strand at 638.917 kb on + strand at 638.917 kb on + strand at 638.917 kb on + strand at 638.917 kb on + strand at 638.918 kb on - strand at 638.986 kb on + strand at 638.986 kb on + strand at 638.987 kb on - strand at 639.022 kb on + strand at 639.022 kb on + strand at 639.023 kb on - strand at 639.088 kb on + strand at 639.088 kb on + strand at 639.089 kb on - strand at 639.158 kb on + strand at 639.158 kb on + strand at 639.158 kb on + strand at 639.158 kb on + strand at 639.158 kb on + strand at 639.159 kb on - strand at 639.159 kb on - strand at 639.159 kb on - strand at 639.159 kb on - strand at 639.164 kb on + strand at 639.164 kb on + strand at 639.165 kb on - strand at 639.165 kb on - strand at 639.165 kb on - strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.394 kb on + strand, within Pf1N1B4_541 at 639.394 kb on + strand, within Pf1N1B4_541 at 639.394 kb on + strand, within Pf1N1B4_541 at 639.395 kb on - strand, within Pf1N1B4_541 at 639.395 kb on - strand, within Pf1N1B4_541 at 639.395 kb on - strand, within Pf1N1B4_541 at 639.395 kb on - strand, within Pf1N1B4_541 at 639.537 kb on + strand at 639.811 kb on + strand at 639.811 kb on + strand at 639.875 kb on + strand at 639.876 kb on - strand at 639.876 kb on - strand at 639.900 kb on + strand at 640.165 kb on - strand, within Pf1N1B4_543
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.1mM remove 638,368 + Pf1N1B4_540 0.59 -0.8 638,369 - Pf1N1B4_540 0.59 +1.7 638,369 - -1.0 638,369 - Pf1N1B4_540 0.59 +0.5 638,369 - Pf1N1B4_540 0.59 -0.8 638,369 - Pf1N1B4_540 0.59 +2.4 638,369 - Pf1N1B4_540 0.59 -0.5 638,418 + Pf1N1B4_540 0.66 -0.2 638,418 + Pf1N1B4_540 0.66 +1.3 638,419 - Pf1N1B4_540 0.66 +0.4 638,419 - Pf1N1B4_540 0.66 +0.5 638,419 - Pf1N1B4_540 0.66 +1.0 638,419 - Pf1N1B4_540 0.66 -0.3 638,422 + Pf1N1B4_540 0.66 -1.7 638,422 + Pf1N1B4_540 0.66 -0.5 638,422 + Pf1N1B4_540 0.66 -2.5 638,422 + Pf1N1B4_540 0.66 +0.0 638,422 + Pf1N1B4_540 0.66 +2.3 638,422 + Pf1N1B4_540 0.66 -2.0 638,422 + Pf1N1B4_540 0.66 -1.7 638,422 + Pf1N1B4_540 0.66 -0.6 638,422 + Pf1N1B4_540 0.66 +0.5 638,422 + Pf1N1B4_540 0.66 +0.4 638,423 - Pf1N1B4_540 0.66 -2.4 638,423 - -1.4 638,423 - Pf1N1B4_540 0.66 -2.0 638,423 - Pf1N1B4_540 0.66 -1.9 638,423 - Pf1N1B4_540 0.66 -2.2 638,423 - Pf1N1B4_540 0.66 -1.2 638,423 - Pf1N1B4_540 0.66 -1.3 638,423 - Pf1N1B4_540 0.66 -2.0 638,423 - Pf1N1B4_540 0.66 -1.9 638,423 - Pf1N1B4_540 0.66 -1.5 638,423 - Pf1N1B4_540 0.66 +1.1 638,423 - Pf1N1B4_540 0.66 +2.0 638,429 - Pf1N1B4_540 0.67 -0.5 638,429 - Pf1N1B4_540 0.67 -1.4 638,512 + Pf1N1B4_540 0.78 +2.6 638,512 + Pf1N1B4_540 0.78 +1.8 638,512 + Pf1N1B4_540 0.78 -2.2 638,512 + Pf1N1B4_540 0.78 +1.6 638,512 + Pf1N1B4_540 0.78 -0.7 638,512 + Pf1N1B4_540 0.78 -0.7 638,512 + Pf1N1B4_540 0.78 -1.5 638,512 + Pf1N1B4_540 0.78 -1.8 638,513 - +0.7 638,513 - Pf1N1B4_540 0.79 +0.0 638,521 + Pf1N1B4_540 0.80 +0.9 638,521 + Pf1N1B4_540 0.80 -2.8 638,521 + Pf1N1B4_540 0.80 +1.7 638,521 + Pf1N1B4_540 0.80 -2.2 638,521 + Pf1N1B4_540 0.80 -2.3 638,521 + Pf1N1B4_540 0.80 +0.9 638,521 + Pf1N1B4_540 0.80 -1.4 638,521 + Pf1N1B4_540 0.80 +0.9 638,521 + Pf1N1B4_540 0.80 -1.0 638,521 + Pf1N1B4_540 0.80 +1.7 638,521 + Pf1N1B4_540 0.80 +2.0 638,521 + Pf1N1B4_540 0.80 -2.7 638,522 - Pf1N1B4_540 0.80 -0.8 638,522 - Pf1N1B4_540 0.80 -1.8 638,522 - Pf1N1B4_540 0.80 -2.3 638,522 - Pf1N1B4_540 0.80 +0.5 638,522 - Pf1N1B4_540 0.80 -0.4 638,522 - Pf1N1B4_540 0.80 +1.2 638,522 - Pf1N1B4_540 0.80 -0.7 638,522 - Pf1N1B4_540 0.80 +0.3 638,522 - Pf1N1B4_540 0.80 +2.4 638,522 - Pf1N1B4_540 0.80 +2.2 638,522 - Pf1N1B4_540 0.80 -1.8 638,554 + Pf1N1B4_540 0.84 -2.6 638,554 + Pf1N1B4_540 0.84 -0.2 638,554 + Pf1N1B4_540 0.84 +1.2 638,554 + Pf1N1B4_540 0.84 +0.6 638,554 + Pf1N1B4_540 0.84 +2.0 638,555 - Pf1N1B4_540 0.84 -1.8 638,555 - Pf1N1B4_540 0.84 -1.3 638,555 - Pf1N1B4_540 0.84 -2.6 638,555 - Pf1N1B4_540 0.84 -0.4 638,555 - Pf1N1B4_540 0.84 +0.8 638,560 + Pf1N1B4_540 0.85 +0.8 638,560 + Pf1N1B4_540 0.85 -2.2 638,560 + Pf1N1B4_540 0.85 +0.4 638,560 + +0.7 638,560 + Pf1N1B4_540 0.85 -2.8 638,561 - Pf1N1B4_540 0.85 +1.0 638,561 - Pf1N1B4_540 0.85 +2.1 638,561 - Pf1N1B4_540 0.85 -3.3 638,587 - -1.5 638,669 - -2.6 638,669 - +0.0 638,748 - -0.5 638,824 + -1.3 638,824 + -1.5 638,824 + -0.2 638,824 + +1.4 638,824 + +0.8 638,824 + +0.9 638,825 - -2.0 638,825 - +2.7 638,825 - +1.5 638,857 + +0.4 638,857 + -1.3 638,857 + -0.2 638,857 + -0.7 638,857 + +1.7 638,858 - +1.8 638,858 - -2.0 638,858 - -1.9 638,858 - -0.9 638,858 - +0.7 638,867 - -0.5 638,867 - -0.0 638,867 - -0.8 638,915 + -0.3 638,915 + -2.9 638,915 + +0.1 638,915 + -0.5 638,916 - -0.2 638,916 - -1.6 638,916 - +0.6 638,916 - +0.2 638,916 - -1.6 638,916 - +1.3 638,916 - -3.1 638,916 - +0.2 638,916 - -1.7 638,916 - -1.4 638,917 + -1.8 638,917 + +0.8 638,917 + -0.2 638,917 + -1.3 638,917 + -2.0 638,917 + +2.5 638,917 + -1.2 638,917 + +1.1 638,918 - +1.8 638,986 + +0.5 638,986 + +1.5 638,987 - +0.3 639,022 + +1.4 639,022 + +0.2 639,023 - -1.9 639,088 + +0.9 639,088 + +0.2 639,089 - +1.7 639,158 + -1.4 639,158 + +1.9 639,158 + -1.8 639,158 + -0.5 639,158 + -1.3 639,159 - +1.6 639,159 - -0.3 639,159 - +0.2 639,159 - -1.0 639,164 + +0.5 639,164 + +0.3 639,165 - -1.2 639,165 - +0.8 639,165 - +1.4 639,168 + +0.6 639,168 + -1.0 639,168 + +1.3 639,168 + -0.1 639,168 + +1.3 639,168 + +1.1 639,168 + -1.4 639,168 + -0.5 639,168 + -0.1 639,168 + -0.6 639,168 + +1.0 639,168 + -0.4 639,168 + -2.0 639,168 + -3.7 639,168 + +1.1 639,168 + -2.9 639,168 + -0.9 639,168 + +1.0 639,168 + +1.6 639,168 + +1.0 639,169 - +0.0 639,169 - +2.0 639,169 - -0.7 639,169 - +1.6 639,169 - -1.5 639,169 - +0.3 639,169 - -0.1 639,169 - +0.0 639,169 - +3.6 639,169 - -0.9 639,169 - +2.0 639,169 - -1.1 639,169 - +0.7 639,394 + Pf1N1B4_541 0.85 -1.5 639,394 + Pf1N1B4_541 0.85 -1.2 639,394 + Pf1N1B4_541 0.85 -2.5 639,395 - Pf1N1B4_541 0.86 +0.3 639,395 - Pf1N1B4_541 0.86 -0.5 639,395 - Pf1N1B4_541 0.86 -0.7 639,395 - Pf1N1B4_541 0.86 -0.5 639,537 + +1.3 639,811 + -0.3 639,811 + -0.7 639,875 + -1.0 639,876 - -0.6 639,876 - -0.3 639,900 + +0.0 640,165 - Pf1N1B4_543 0.16 -0.7
Or see this region's nucleotide sequence