Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2502

Experiment: nitrogen source nitrite 0.1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 0.1mM
2,836,402	-		Pf1N1B4_2500	0.80	-1.4
2,836,456	+				-2.9
2,836,456	+				-0.8
2,836,456	+				+0.2
2,836,456	+				-1.1
2,836,456	+				-1.5
2,836,456	+				-0.0
2,836,456	+				-1.2
2,836,457	-				-1.2
2,836,457	-				+0.5
2,836,457	-				-3.0
2,836,457	-				+0.5
2,836,470	+				+0.2
2,836,470	+				-2.3
2,836,471	-				+0.5
2,836,523	+				-1.6
2,836,611	+		Pf1N1B4_2501	0.21	-1.0
2,836,611	+		Pf1N1B4_2501	0.21	-2.2
2,836,611	+		Pf1N1B4_2501	0.21	-2.4
2,836,611	+		Pf1N1B4_2501	0.21	-2.4
2,836,612	-		Pf1N1B4_2501	0.21	-1.1
2,836,616	+		Pf1N1B4_2501	0.22	-1.0
2,836,616	+		Pf1N1B4_2501	0.22	-2.3
2,836,616	+		Pf1N1B4_2501	0.22	+0.2
2,836,616	+		Pf1N1B4_2501	0.22	-2.8
2,836,616	+		Pf1N1B4_2501	0.22	-1.2
2,836,617	-		Pf1N1B4_2501	0.22	-0.8
2,836,617	-		Pf1N1B4_2501	0.22	-1.8
2,836,617	-		Pf1N1B4_2501	0.22	-0.8
2,836,617	-		Pf1N1B4_2501	0.22	-0.7
2,836,617	-		Pf1N1B4_2501	0.22	+0.2
2,836,617	-		Pf1N1B4_2501	0.22	+0.1
2,836,617	-		Pf1N1B4_2501	0.22	-2.4
2,836,686	-		Pf1N1B4_2501	0.31	+1.3
2,836,686	-		Pf1N1B4_2501	0.31	-1.8
2,836,686	-		Pf1N1B4_2501	0.31	+3.0
2,836,686	-		Pf1N1B4_2501	0.31	+0.9
2,836,692	-		Pf1N1B4_2501	0.32	-1.7
2,836,826	+		Pf1N1B4_2501	0.50	-1.2
2,836,826	+		Pf1N1B4_2501	0.50	-2.3
2,836,826	+		Pf1N1B4_2501	0.50	+0.6
2,836,826	+		Pf1N1B4_2501	0.50	-0.8
2,836,826	+		Pf1N1B4_2501	0.50	-2.9
2,836,826	+		Pf1N1B4_2501	0.50	+1.8
2,836,827	-		Pf1N1B4_2501	0.50	-1.0
2,836,827	-		Pf1N1B4_2501	0.50	-0.3
2,836,827	-		Pf1N1B4_2501	0.50	-3.3
2,837,052	-		Pf1N1B4_2501	0.80	-1.0
2,837,054	+		Pf1N1B4_2501	0.80	+2.9
2,837,054	+		Pf1N1B4_2501	0.80	+1.4
2,837,055	-		Pf1N1B4_2501	0.80	+0.6
2,837,108	+		Pf1N1B4_2501	0.87	+0.5
2,837,108	+		Pf1N1B4_2501	0.87	-3.8
2,837,108	+		Pf1N1B4_2501	0.87	-0.1
2,837,108	+		Pf1N1B4_2501	0.87	-0.3
2,837,108	+		Pf1N1B4_2501	0.87	-1.9
2,837,108	+		Pf1N1B4_2501	0.87	-1.9
2,837,108	+		Pf1N1B4_2501	0.87	-0.1
2,837,108	+		Pf1N1B4_2501	0.87	+0.5
2,837,108	+		Pf1N1B4_2501	0.87	+0.2
2,837,108	+		Pf1N1B4_2501	0.87	-1.4
2,837,108	+		Pf1N1B4_2501	0.87	+0.4
2,837,108	+		Pf1N1B4_2501	0.87	+0.7
2,837,109	-		Pf1N1B4_2501	0.87	+0.7
2,837,109	-		Pf1N1B4_2501	0.87	-1.8
2,837,109	-		Pf1N1B4_2501	0.87	-0.8
2,837,109	-		Pf1N1B4_2501	0.87	-0.8
2,837,109	-		Pf1N1B4_2501	0.87	-0.3
2,837,109	-		Pf1N1B4_2501	0.87	+2.0
2,837,109	-		Pf1N1B4_2501	0.87	-0.3
2,837,109	-		Pf1N1B4_2501	0.87	+0.9
2,837,109	-		Pf1N1B4_2501	0.87	-1.3
2,837,109	-		Pf1N1B4_2501	0.87	-2.0
2,837,109	-		Pf1N1B4_2501	0.87	-1.9
2,837,109	-		Pf1N1B4_2501	0.87	-1.9
2,837,109	-		Pf1N1B4_2501	0.87	-0.1
2,837,109	-		Pf1N1B4_2501	0.87	+0.0
2,837,109	-		Pf1N1B4_2501	0.87	-2.6
2,837,109	-		Pf1N1B4_2501	0.87	-0.5
2,837,109	-		Pf1N1B4_2501	0.87	-0.8
2,837,123	+		Pf1N1B4_2501	0.89	+0.8
2,837,132	+				-3.4
2,837,132	+				-1.4
2,837,132	+				-0.3
2,837,132	+				-1.8
2,837,132	+				+1.0
2,837,132	+				-0.8
2,837,132	+				-0.0
2,837,132	+				-2.6
2,837,132	+				-0.1
2,837,132	+				-1.0
2,837,133	-				-1.0
2,837,133	-				-1.4
2,837,133	-				-2.3
2,837,133	-				-2.5
2,837,133	-				-2.1
2,837,133	-				+1.9
2,837,133	-				+1.3
2,837,133	-				-2.1
2,837,133	-				+1.4
2,837,133	-				-1.0
2,837,141	+				-2.2
2,837,141	+				-2.0
2,837,141	+				-1.4
2,837,141	+				-0.3
2,837,141	+				+0.2
2,837,141	+				-2.4
2,837,142	-				-2.0
2,837,142	-				-0.1
2,837,142	-				-1.4
2,837,142	-				+0.5
2,837,142	-				-1.1
2,837,142	-				-1.0
2,837,142	-				-1.0
2,837,144	+				+4.4
2,837,144	+				+1.9
2,837,144	+				-0.1
2,837,144	+				+1.0
2,837,145	-				+1.5
2,837,145	-				-2.1
2,837,145	-				+0.5
2,837,145	-				+0.6
2,837,145	-				-1.9
2,837,221	-				+0.2
2,837,286	-				+3.2
2,837,294	+				+0.3
2,837,294	+				-0.8
2,837,295	-				+0.3
2,837,295	-				-2.6
2,837,295	-				+3.0
2,837,344	+				+0.9
2,837,344	+				-1.4
2,837,344	+				-1.8
2,837,345	-				+0.3
2,837,345	-				-1.7
2,837,345	-				+0.9
2,837,359	-				+1.6
2,837,658	+		Pf1N1B4_2502	0.36	-1.8
2,837,658	+		Pf1N1B4_2502	0.36	+2.6
2,837,658	+		Pf1N1B4_2502	0.36	+1.6
2,837,658	+		Pf1N1B4_2502	0.36	-1.4
2,837,658	+		Pf1N1B4_2502	0.36	-1.9
2,837,658	+		Pf1N1B4_2502	0.36	-0.5
2,837,658	+		Pf1N1B4_2502	0.36	-2.6
2,837,659	-		Pf1N1B4_2502	0.36	-2.7
2,837,659	-		Pf1N1B4_2502	0.36	-2.0
2,837,659	-		Pf1N1B4_2502	0.36	-2.5
2,837,659	-		Pf1N1B4_2502	0.36	-2.0
2,837,659	-		Pf1N1B4_2502	0.36	-3.1
2,837,659	-		Pf1N1B4_2502	0.36	-2.2
2,837,659	-		Pf1N1B4_2502	0.36	+1.3
2,837,659	-		Pf1N1B4_2502	0.36	-1.4
2,837,659	-		Pf1N1B4_2502	0.36	-0.5
2,837,668	+		Pf1N1B4_2502	0.37	-3.5
2,837,828	-		Pf1N1B4_2502	0.54	-1.6
2,838,227	+				+1.8
2,838,227	+				-0.6
2,838,228	-				+0.2
2,838,228	-				-1.0
2,838,228	-				-2.3
2,838,273	-				+3.3
2,838,313	+				+1.8
2,838,314	-				-2.3
2,838,345	+				-1.8
2,838,345	+				-1.7
2,838,345	+				-1.2
2,838,345	+				-1.2
2,838,346	-				+0.5
2,838,346	-				-0.7
2,838,346	-				-2.0
2,838,346	-				+0.8
2,838,346	-				-0.7
2,838,346	-				+0.4
2,838,346	-				-0.0
2,838,346	-				-2.8
2,838,346	-				-1.0
2,838,346	-				+0.8
2,838,381	+				-0.2
2,838,381	+				-3.5
2,838,381	+				-3.1
2,838,381	+				+0.4
2,838,382	-				+0.3
2,838,382	-				+0.9
2,838,382	-				-2.4
2,838,382	-				+0.8
2,838,382	-				-2.4
2,838,382	-				-1.0
2,838,382	-				-2.4
2,838,403	+				-3.4
2,838,403	+				-1.7
2,838,404	-				-1.2
2,838,404	-				-1.7
2,838,404	-				+0.2
2,838,404	-				-2.0
2,838,404	-				-0.5
2,838,404	-				+1.2
2,838,404	-				-0.3
2,838,404	-				-1.6
2,838,404	-				-1.3
2,838,404	-				-0.4
2,838,404	-				+1.3
2,838,441	+				-1.1
2,838,441	+				+3.2
2,838,441	+				+0.3
2,838,441	+				-1.4
2,838,441	+				-2.0
2,838,441	+				-1.7
2,838,441	+				+1.9
2,838,441	+				-2.2
2,838,441	+				-0.5
2,838,441	+				+0.3
2,838,442	-				+0.2
2,838,442	-				-1.2
2,838,442	-				+3.2
2,838,442	-				+0.6
2,838,442	-				+1.1
2,838,442	-				+0.1
2,838,442	-				+0.3
2,838,442	-				+1.1
2,838,442	-				-0.8
2,838,442	-				+0.9
2,838,442	-				-3.5
2,838,442	-				+2.3
2,838,443	+				-2.9
2,838,443	+				-2.9
2,838,443	+				-2.7
2,838,443	+				-1.4
2,838,443	+				-2.5
2,838,443	+				-0.7
2,838,443	+				+2.5
2,838,443	+				-0.3
2,838,443	+				-0.4
2,838,443	+				+1.1
2,838,443	+				-1.6
2,838,443	+				-1.1
2,838,443	+				-1.8
2,838,443	+				-2.7
2,838,443	+				-0.9
2,838,443	+				+0.0
2,838,443	+				-0.8
2,838,443	+				-3.3
2,838,443	+				-2.5
2,838,443	+				-0.5
2,838,443	+				-1.2
2,838,444	-				+2.3
2,838,444	-				-2.0
2,838,444	-				-0.5
2,838,444	-				-1.9
2,838,444	-				-1.2
2,838,444	-				-0.1
2,838,444	-				-1.2
2,838,444	-				+2.6
2,838,444	-				-0.1
2,838,444	-				+0.5
2,838,444	-				+0.4
2,838,444	-				-0.8
2,838,444	-				-1.2
2,838,444	-				-1.1
2,838,444	-				-1.2
2,838,444	-				-1.2
2,838,444	-				+2.5
2,838,444	-				-2.0
2,838,444	-				-1.2
2,838,444	-				+1.7
2,838,444	-				-1.5
2,838,444	-				-0.7
2,838,444	-				+1.1
2,838,444	-				-0.7
2,838,444	-				-0.7
2,838,447	+				-2.2
2,838,447	+				-1.6
2,838,447	+				-1.2
2,838,447	+				+1.6
2,838,447	+				+1.5
2,838,447	+				-1.5
2,838,447	+				+0.7
2,838,447	+				-1.2
2,838,447	+				+1.2
2,838,447	+				-0.8
2,838,447	+				-1.8
2,838,447	+				+0.6
2,838,447	+				+0.5
2,838,447	+				-1.0
2,838,447	+				+0.5
2,838,447	+				+0.7
2,838,447	+				-1.5
2,838,447	+				+0.5
2,838,447	+				-2.3
2,838,447	+				+1.5
2,838,447	+				+0.3
2,838,447	+				-0.8
2,838,447	+				+0.1
2,838,447	+				+2.2
2,838,447	+				-1.8
2,838,447	+				+0.7
2,838,447	+				-1.9
2,838,447	+				+1.6
2,838,447	+				+1.0
2,838,447	+				+0.5
2,838,447	+				-0.8
2,838,448	-				+0.2
2,838,448	-				-2.0
2,838,448	-				+1.6
2,838,448	-				-2.1
2,838,448	-				-0.5
2,838,448	-				-1.3
2,838,448	-				+0.7
2,838,448	-				-1.5
2,838,448	-				+2.0
2,838,448	-				+1.2
2,838,448	-				+0.9
2,838,448	-				-1.2
2,838,448	-				-0.8
2,838,448	-				-0.7
2,838,448	-				-0.8
2,838,448	-				-0.3
2,838,448	-				-1.4
2,838,448	-				+3.8
2,838,448	-				-0.3
2,838,448	-				-2.4
2,838,448	-				+1.0
2,838,448	-				-3.2
2,838,448	-				-0.0
2,838,448	-				-0.1
2,838,448	-				-0.8
2,838,448	-				-1.6
2,838,448	-				+2.0
2,838,448	-				+0.8
2,838,448	-				-2.0
2,838,448	-				-2.4
2,838,448	-				+0.4
2,838,448	-				+0.5
2,838,448	-				+1.5
2,838,448	-				+0.2
2,838,448	-				+1.1
2,838,449	+				+1.7
2,838,449	+				+2.5
2,838,449	+				+0.3
2,838,449	+				-2.1
2,838,449	+				+0.1
2,838,449	+				+0.3
2,838,449	+				-1.1
2,838,449	+				-1.0
2,838,449	+				-1.8
2,838,449	+				+0.8
2,838,450	-				-0.7
2,838,450	-				+0.1
2,838,450	-				+1.8
2,838,450	-				+3.2
2,838,450	-				-0.1
2,838,450	-				+1.4
2,838,450	-				-2.0
2,838,450	-				-0.7
2,838,478	+				+0.2
2,838,478	+				-1.2
2,838,478	+				-1.6
2,838,479	-				-2.0
2,838,479	-				-2.0
2,838,479	-				+0.5
2,838,479	-				-0.3
2,838,482	+				+1.1
2,838,482	+				+0.3
2,838,482	+				-2.0
2,838,482	+				-0.4
2,838,482	+				-2.5
2,838,483	-				+0.4
2,838,483	-				-1.7
2,838,483	-				+0.9
2,838,483	-				+0.7
2,838,483	-				-0.8
2,838,490	+				+0.5
2,838,490	+				-1.5
2,838,490	+				-1.8
2,838,491	-				+1.1
2,838,539	+				+2.2
2,838,539	+				-0.5
2,838,540	-				+1.9
2,838,540	-				-2.3
2,838,583	+				-0.7
2,838,884	+		Pf1N1B4_2503	0.13	+2.2
2,838,885	-		Pf1N1B4_2503	0.13	-0.4
2,838,953	+		Pf1N1B4_2503	0.16	+0.8
2,838,954	-		Pf1N1B4_2503	0.16	-0.3
2,838,972	+		Pf1N1B4_2503	0.17	+2.5
2,839,005	+		Pf1N1B4_2503	0.18	-0.7
2,839,190	-		Pf1N1B4_2503	0.26	-0.3