Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1954

Experiment: nitrogen source nitrite 0.1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 0.1mM
2,234,334	+				-0.0
2,234,371	+				-1.3
2,234,372	-				+0.4
2,234,372	-				-1.8
2,234,401	+				+2.0
2,234,417	+				+1.4
2,234,417	+				+0.3
2,234,418	-				-0.9
2,234,418	-				-0.9
2,234,418	-				+0.4
2,234,431	+				-1.7
2,234,431	+				+0.4
2,234,432	-				+0.2
2,234,432	-				+1.3
2,234,494	+		Pf1N1B4_1953	0.10	+0.9
2,234,495	-		Pf1N1B4_1953	0.10	-1.6
2,234,495	-		Pf1N1B4_1953	0.10	-0.6
2,234,495	-		Pf1N1B4_1953	0.10	-3.1
2,234,495	-		Pf1N1B4_1953	0.10	-0.5
2,234,495	-		Pf1N1B4_1953	0.10	-0.9
2,234,586	+		Pf1N1B4_1953	0.25	+1.0
2,234,587	-		Pf1N1B4_1953	0.25	+0.7
2,234,623	+		Pf1N1B4_1953	0.31	-0.6
2,234,623	+		Pf1N1B4_1953	0.31	-1.5
2,234,624	-		Pf1N1B4_1953	0.31	-1.9
2,234,665	+		Pf1N1B4_1953	0.38	-0.3
2,234,666	-		Pf1N1B4_1953	0.38	-0.1
2,234,666	-		Pf1N1B4_1953	0.38	-0.3
2,234,780	+		Pf1N1B4_1953	0.56	-0.1
2,234,785	+		Pf1N1B4_1953	0.57	-1.3
2,234,878	-		Pf1N1B4_1953	0.72	-2.8
2,234,886	+		Pf1N1B4_1953	0.73	-0.5
2,234,886	+		Pf1N1B4_1953	0.73	-1.3
2,235,032	+				-2.6
2,235,032	+				-1.0
2,235,032	+				+0.6
2,235,032	+				+0.9
2,235,032	+				-1.0
2,235,032	+				-1.6
2,235,033	-				+0.9
2,235,033	-				+1.8
2,235,033	-				-1.1
2,235,033	-				+3.9
2,235,033	-				+0.1
2,235,040	+				-2.3
2,235,040	+				-0.9
2,235,040	+				-1.6
2,235,040	+				-0.6
2,235,040	+				+0.6
2,235,041	-				+1.1
2,235,041	-				+0.1
2,235,041	-				-1.7
2,235,041	-				-1.5
2,235,041	-				-1.5
2,235,041	-				-1.0
2,235,041	-				-0.9
2,235,096	+				+1.1
2,235,097	-				-0.9
2,235,098	+				-0.1
2,235,098	+				-0.6
2,235,098	+				-1.1
2,235,098	+				-2.1
2,235,098	+				+1.3
2,235,098	+				-0.6
2,235,098	+				+1.6
2,235,098	+				+1.6
2,235,098	+				-2.9
2,235,098	+				-0.3
2,235,098	+				-2.9
2,235,098	+				+0.4
2,235,098	+				+1.4
2,235,098	+				+0.4
2,235,098	+				+1.0
2,235,098	+				+0.1
2,235,099	-				-1.0
2,235,099	-				-1.1
2,235,099	-				+1.1
2,235,099	-				+1.3
2,235,099	-				+0.9
2,235,099	-				+1.0
2,235,099	-				+1.7
2,235,099	-				-1.1
2,235,099	-				+0.6
2,235,099	-				+1.6
2,235,099	-				-0.0
2,235,099	-				+2.8
2,235,099	-				+0.9
2,235,099	-				+1.1
2,235,099	-				-2.1
2,235,099	-				-3.4
2,235,099	-				-1.1
2,235,099	-				-1.7
2,235,099	-				-0.8
2,235,099	-				-0.9
2,235,099	-				-1.8
2,235,099	-				+1.3
2,235,108	+				+1.9
2,235,108	+				-2.3
2,235,123	+				-0.5
2,235,124	-				-2.3
2,235,207	+				-0.3
2,235,208	-				-1.8
2,235,208	-				-1.6
2,235,365	+		Pf1N1B4_1954	0.17	-0.6
2,235,365	+		Pf1N1B4_1954	0.17	-2.1
2,235,365	+		Pf1N1B4_1954	0.17	-0.6
2,235,365	+		Pf1N1B4_1954	0.17	+1.6
2,235,365	+		Pf1N1B4_1954	0.17	-3.6
2,235,365	+		Pf1N1B4_1954	0.17	-0.9
2,235,365	+		Pf1N1B4_1954	0.17	-3.2
2,235,366	-		Pf1N1B4_1954	0.17	+2.2
2,235,366	-		Pf1N1B4_1954	0.17	+0.1
2,235,366	-		Pf1N1B4_1954	0.17	-1.0
2,235,366	-		Pf1N1B4_1954	0.17	-0.3
2,235,366	-		Pf1N1B4_1954	0.17	+1.9
2,235,366	-		Pf1N1B4_1954	0.17	-2.0
2,235,366	-		Pf1N1B4_1954	0.17	+1.4
2,235,552	+		Pf1N1B4_1954	0.38	-2.4
2,235,553	-		Pf1N1B4_1954	0.38	+1.3
2,235,553	-		Pf1N1B4_1954	0.38	+0.5
2,235,553	-		Pf1N1B4_1954	0.38	-0.1
2,235,937	-		Pf1N1B4_1954	0.80	-2.8
2,235,937	-		Pf1N1B4_1954	0.80	-1.9
2,236,058	+				+0.9
2,236,059	-				-1.5
2,236,139	-				-1.1
2,236,139	-				+1.3
2,236,189	+				+0.3
2,236,265	+				-2.1
2,236,265	+				-0.4
2,236,265	+				+1.3
2,236,265	+				-0.2
2,236,265	+				-1.3
2,236,299	+				-0.7
2,236,299	+				+0.9
2,236,299	+				+1.6
2,236,299	+				-0.3
2,236,299	+				-2.1
2,236,299	+				-2.5
2,236,300	-				-0.1
2,236,466	+		Pf1N1B4_1955	0.35	-3.1
2,236,466	+		Pf1N1B4_1955	0.35	+0.6
2,236,467	-		Pf1N1B4_1955	0.35	+0.0
2,236,467	-		Pf1N1B4_1955	0.35	-0.4
2,236,481	+		Pf1N1B4_1955	0.37	-0.4
2,236,599	+		Pf1N1B4_1955	0.56	+3.3
2,236,599	+		Pf1N1B4_1955	0.56	-2.1
2,236,600	-		Pf1N1B4_1955	0.56	-0.4
2,236,600	-				-1.6
2,236,600	-		Pf1N1B4_1955	0.56	+0.0
2,236,600	-		Pf1N1B4_1955	0.56	-1.3
2,236,600	-		Pf1N1B4_1955	0.56	-2.2
2,236,613	+		Pf1N1B4_1955	0.58	-1.5
2,236,613	+		Pf1N1B4_1955	0.58	+0.7
2,236,613	+		Pf1N1B4_1955	0.58	-1.6
2,236,613	+		Pf1N1B4_1955	0.58	-1.3
2,236,613	+		Pf1N1B4_1955	0.58	+2.8
2,236,614	-		Pf1N1B4_1955	0.59	+1.7
2,236,614	-		Pf1N1B4_1955	0.59	-0.3
2,236,614	-		Pf1N1B4_1955	0.59	-1.9
2,236,659	+		Pf1N1B4_1955	0.66	-1.3
2,236,659	+		Pf1N1B4_1955	0.66	-1.6
2,236,659	+		Pf1N1B4_1955	0.66	+0.2
2,236,660	-		Pf1N1B4_1955	0.66	+0.8
2,236,660	-		Pf1N1B4_1955	0.66	+0.9
2,236,688	+		Pf1N1B4_1955	0.70	-0.6
2,236,688	+		Pf1N1B4_1955	0.70	+2.6
2,236,688	+		Pf1N1B4_1955	0.70	+1.2
2,236,689	-		Pf1N1B4_1955	0.70	+1.3
2,236,730	+		Pf1N1B4_1955	0.77	-1.4
2,236,736	+		Pf1N1B4_1955	0.78	+0.1
2,236,736	+		Pf1N1B4_1955	0.78	-0.7
2,236,736	+		Pf1N1B4_1955	0.78	+1.4
2,236,736	+		Pf1N1B4_1955	0.78	-1.8
2,236,736	+		Pf1N1B4_1955	0.78	-0.7
2,236,736	+		Pf1N1B4_1955	0.78	+2.3
2,236,736	+		Pf1N1B4_1955	0.78	-3.2
2,236,736	+		Pf1N1B4_1955	0.78	-0.9
2,236,736	+		Pf1N1B4_1955	0.78	+0.6
2,236,736	+		Pf1N1B4_1955	0.78	+0.3
2,236,736	+		Pf1N1B4_1955	0.78	+0.6
2,236,736	+		Pf1N1B4_1955	0.78	-1.8
2,236,737	-				+1.0
2,236,737	-		Pf1N1B4_1955	0.78	-0.9
2,236,737	-		Pf1N1B4_1955	0.78	-2.6
2,236,737	-		Pf1N1B4_1955	0.78	-0.9
2,236,737	-		Pf1N1B4_1955	0.78	-1.8
2,236,737	-		Pf1N1B4_1955	0.78	-2.1
2,237,013	+				+0.7
2,237,013	+				-3.1
2,237,013	+				-1.6
2,237,013	+				+0.9
2,237,014	-				+0.1
2,237,014	-				-3.1
2,237,014	-				+0.1
2,237,014	-				-2.9
2,237,020	+				+2.4
2,237,020	+				+2.7
2,237,020	+				+0.2
2,237,021	-				+0.6
2,237,063	+				+0.8
2,237,063	+				-0.7
2,237,063	+				-0.6
2,237,064	-				+1.1
2,237,064	-				-1.0