Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS20485

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS20480 and RALBFv3_RS20485 overlap by 4 nucleotidesRALBFv3_RS20485 and RALBFv3_RS20490 overlap by 4 nucleotides RALBFv3_RS20480: RALBFv3_RS20480 - HoxN/HupN/NixA family nickel/cobalt transporter, at 1,293,819 to 1,294,892 _RS20480 RALBFv3_RS20485: RALBFv3_RS20485 - Ferredoxin, 2Fe-2s, at 1,294,889 to 1,295,218 _RS20485 RALBFv3_RS20490: RALBFv3_RS20490 - cobaltochelatase subunit CobN, at 1,295,215 to 1,299,303 _RS20490 Position (kb) 1294 1295 1296Strain fitness (log2 ratio) -1 0 1at 1294.295 kb on - strand, within RALBFv3_RS20480at 1294.295 kb on - strand, within RALBFv3_RS20480at 1294.594 kb on - strand, within RALBFv3_RS20480at 1294.632 kb on + strand, within RALBFv3_RS20480at 1294.633 kb on - strand, within RALBFv3_RS20480at 1294.833 kb on + strandat 1295.695 kb on + strand, within RALBFv3_RS20490at 1295.695 kb on + strand, within RALBFv3_RS20490at 1295.695 kb on + strand, within RALBFv3_RS20490at 1295.695 kb on + strand, within RALBFv3_RS20490at 1295.696 kb on - strand, within RALBFv3_RS20490at 1295.782 kb on + strand, within RALBFv3_RS20490at 1295.783 kb on - strand, within RALBFv3_RS20490

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
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1,294,295 - RALBFv3_RS20480 0.44 +0.8
1,294,295 - RALBFv3_RS20480 0.44 -0.8
1,294,594 - RALBFv3_RS20480 0.72 +0.4
1,294,632 + RALBFv3_RS20480 0.76 +0.1
1,294,633 - RALBFv3_RS20480 0.76 -0.8
1,294,833 + -0.6
1,295,695 + RALBFv3_RS20490 0.12 -0.7
1,295,695 + RALBFv3_RS20490 0.12 +0.2
1,295,695 + RALBFv3_RS20490 0.12 +0.0
1,295,695 + RALBFv3_RS20490 0.12 +0.1
1,295,696 - RALBFv3_RS20490 0.12 -0.1
1,295,782 + RALBFv3_RS20490 0.14 -1.4
1,295,783 - RALBFv3_RS20490 0.14 +0.8

Or see this region's nucleotide sequence