Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS14500 and RALBFv3_RS14505 overlap by 4 nucleotides RALBFv3_RS14505 and RALBFv3_RS14510 overlap by 4 nucleotides RALBFv3_RS14510 and RALBFv3_RS14515 are separated by 101 nucleotides RALBFv3_RS14515 and RALBFv3_RS14520 are separated by 120 nucleotides
RALBFv3_RS14500: RALBFv3_RS14500 - pyridoxine 5'-phosphate synthase, at 3,166,844 to 3,167,635
_RS14500
RALBFv3_RS14505: RALBFv3_RS14505 - holo-ACP synthase, at 3,167,632 to 3,168,075
_RS14505
RALBFv3_RS14510: RALBFv3_RS14510 - beta-N-acetylhexosaminidase, at 3,168,072 to 3,169,124
_RS14510
RALBFv3_RS14515: RALBFv3_RS14515 - elongation factor P, at 3,169,226 to 3,169,795
_RS14515
RALBFv3_RS14520: RALBFv3_RS14520 - elongation factor P maturation arginine rhamnosyltransferase EarP, at 3,169,916 to 3,171,121
_RS14520
Position (kb) 3168
3169
3170 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 3168.820 kb on - strand, within RALBFv3_RS14510 at 3169.228 kb on - strand at 3169.903 kb on - strand at 3169.905 kb on - strand at 3169.918 kb on - strand at 3169.946 kb on + strand at 3169.946 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days remove 3,168,820 - RALBFv3_RS14510 0.71 -7.1 3,169,228 - -0.3 3,169,903 - -0.3 3,169,905 - +0.7 3,169,918 - -1.1 3,169,946 + -1.6 3,169,946 + -2.5
Or see this region's nucleotide sequence