Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS04955 and RALBFv3_RS04960 are separated by 10 nucleotides RALBFv3_RS04960 and RALBFv3_RS04965 are separated by 98 nucleotides
RALBFv3_RS04955: RALBFv3_RS04955 - toxin HipA, at 1,105,979 to 1,107,304
_RS04955
RALBFv3_RS04960: RALBFv3_RS04960 - hypothetical protein, at 1,107,315 to 1,107,584
_RS04960
RALBFv3_RS04965: RALBFv3_RS04965 - signal peptidase, at 1,107,683 to 1,108,699
_RS04965
Position (kb) 1107
1108 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1106.729 kb on + strand, within RALBFv3_RS04955 at 1106.730 kb on - strand, within RALBFv3_RS04955 at 1106.771 kb on + strand, within RALBFv3_RS04955 at 1106.981 kb on + strand, within RALBFv3_RS04955 at 1106.982 kb on - strand, within RALBFv3_RS04955 at 1107.317 kb on - strand at 1107.353 kb on - strand, within RALBFv3_RS04960 at 1107.353 kb on - strand, within RALBFv3_RS04960 at 1107.353 kb on - strand, within RALBFv3_RS04960 at 1107.359 kb on - strand, within RALBFv3_RS04960 at 1107.451 kb on + strand, within RALBFv3_RS04960 at 1107.626 kb on + strand at 1107.626 kb on + strand at 1107.627 kb on - strand at 1107.627 kb on - strand at 1107.951 kb on + strand, within RALBFv3_RS04965 at 1107.952 kb on - strand, within RALBFv3_RS04965 at 1107.971 kb on - strand, within RALBFv3_RS04965 at 1108.170 kb on + strand, within RALBFv3_RS04965 at 1108.171 kb on - strand, within RALBFv3_RS04965 at 1108.171 kb on - strand, within RALBFv3_RS04965 at 1108.174 kb on + strand, within RALBFv3_RS04965 at 1108.257 kb on + strand, within RALBFv3_RS04965 at 1108.257 kb on + strand, within RALBFv3_RS04965 at 1108.257 kb on + strand, within RALBFv3_RS04965 at 1108.258 kb on - strand, within RALBFv3_RS04965 at 1108.296 kb on + strand, within RALBFv3_RS04965 at 1108.296 kb on + strand, within RALBFv3_RS04965 at 1108.296 kb on + strand, within RALBFv3_RS04965 at 1108.296 kb on + strand, within RALBFv3_RS04965 at 1108.296 kb on + strand, within RALBFv3_RS04965 at 1108.297 kb on - strand, within RALBFv3_RS04965 at 1108.453 kb on + strand, within RALBFv3_RS04965 at 1108.485 kb on + strand, within RALBFv3_RS04965 at 1108.485 kb on + strand, within RALBFv3_RS04965 at 1108.485 kb on + strand, within RALBFv3_RS04965 at 1108.485 kb on + strand, within RALBFv3_RS04965 at 1108.486 kb on - strand, within RALBFv3_RS04965 at 1108.486 kb on - strand, within RALBFv3_RS04965 at 1108.486 kb on - strand, within RALBFv3_RS04965
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days remove 1,106,729 + RALBFv3_RS04955 0.57 +0.6 1,106,730 - RALBFv3_RS04955 0.57 -5.2 1,106,771 + RALBFv3_RS04955 0.60 -2.3 1,106,981 + RALBFv3_RS04955 0.76 -3.8 1,106,982 - RALBFv3_RS04955 0.76 -3.4 1,107,317 - +0.2 1,107,353 - RALBFv3_RS04960 0.14 +1.7 1,107,353 - RALBFv3_RS04960 0.14 +2.0 1,107,353 - RALBFv3_RS04960 0.14 +2.4 1,107,359 - RALBFv3_RS04960 0.16 +2.0 1,107,451 + RALBFv3_RS04960 0.50 +2.3 1,107,626 + +0.1 1,107,626 + +0.3 1,107,627 - -0.4 1,107,627 - -0.6 1,107,951 + RALBFv3_RS04965 0.26 +0.1 1,107,952 - RALBFv3_RS04965 0.26 -0.6 1,107,971 - RALBFv3_RS04965 0.28 -1.0 1,108,170 + RALBFv3_RS04965 0.48 -1.3 1,108,171 - RALBFv3_RS04965 0.48 +0.4 1,108,171 - RALBFv3_RS04965 0.48 +1.0 1,108,174 + RALBFv3_RS04965 0.48 +0.2 1,108,257 + RALBFv3_RS04965 0.56 +0.1 1,108,257 + RALBFv3_RS04965 0.56 +0.6 1,108,257 + RALBFv3_RS04965 0.56 +0.8 1,108,258 - RALBFv3_RS04965 0.57 -0.3 1,108,296 + RALBFv3_RS04965 0.60 +0.4 1,108,296 + RALBFv3_RS04965 0.60 -0.6 1,108,296 + RALBFv3_RS04965 0.60 +0.9 1,108,296 + RALBFv3_RS04965 0.60 -0.2 1,108,296 + RALBFv3_RS04965 0.60 +0.7 1,108,297 - RALBFv3_RS04965 0.60 +1.6 1,108,453 + RALBFv3_RS04965 0.76 +0.7 1,108,485 + RALBFv3_RS04965 0.79 -1.4 1,108,485 + RALBFv3_RS04965 0.79 -1.0 1,108,485 + RALBFv3_RS04965 0.79 -0.0 1,108,485 + RALBFv3_RS04965 0.79 +1.2 1,108,486 - RALBFv3_RS04965 0.79 -1.0 1,108,486 - RALBFv3_RS04965 0.79 -0.1 1,108,486 - RALBFv3_RS04965 0.79 +0.3
Or see this region's nucleotide sequence