Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03320 and RALBFv3_RS03325 are separated by 131 nucleotides RALBFv3_RS03325 and RALBFv3_RS03330 are separated by 17 nucleotides RALBFv3_RS03330 and RALBFv3_RS03335 are separated by 145 nucleotides
RALBFv3_RS03320: RALBFv3_RS03320 - DNA-directed RNA polymerase subunit omega, at 726,106 to 726,309
_RS03320
RALBFv3_RS03325: RALBFv3_RS03325 - guanylate kinase, at 726,441 to 727,106
_RS03325
RALBFv3_RS03330: RALBFv3_RS03330 - YicC family protein, at 727,124 to 728,059
_RS03330
RALBFv3_RS03335: RALBFv3_RS03335 - serine/threonine protein kinase, at 728,205 to 729,227
_RS03335
Position (kb) 727
728
729 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 726.237 kb on - strand, within RALBFv3_RS03320 at 726.301 kb on - strand at 726.352 kb on - strand at 726.496 kb on + strand at 726.496 kb on + strand at 727.657 kb on - strand, within RALBFv3_RS03330 at 728.000 kb on - strand at 728.038 kb on - strand at 728.077 kb on - strand at 728.077 kb on - strand at 728.077 kb on - strand at 728.079 kb on - strand at 728.079 kb on - strand at 728.083 kb on - strand at 728.151 kb on - strand at 728.151 kb on - strand at 728.187 kb on - strand at 728.187 kb on - strand at 728.285 kb on - strand at 728.457 kb on + strand, within RALBFv3_RS03335 at 728.458 kb on - strand, within RALBFv3_RS03335 at 728.548 kb on - strand, within RALBFv3_RS03335 at 728.548 kb on - strand, within RALBFv3_RS03335 at 728.548 kb on - strand, within RALBFv3_RS03335 at 728.554 kb on + strand, within RALBFv3_RS03335 at 728.554 kb on + strand, within RALBFv3_RS03335 at 728.729 kb on + strand, within RALBFv3_RS03335 at 728.733 kb on + strand, within RALBFv3_RS03335 at 728.734 kb on - strand, within RALBFv3_RS03335 at 728.824 kb on - strand, within RALBFv3_RS03335 at 728.824 kb on - strand, within RALBFv3_RS03335 at 728.892 kb on + strand, within RALBFv3_RS03335 at 728.892 kb on + strand, within RALBFv3_RS03335 at 728.892 kb on + strand, within RALBFv3_RS03335 at 728.893 kb on - strand, within RALBFv3_RS03335 at 728.913 kb on + strand, within RALBFv3_RS03335 at 728.913 kb on + strand, within RALBFv3_RS03335 at 728.913 kb on + strand, within RALBFv3_RS03335 at 728.914 kb on - strand, within RALBFv3_RS03335 at 728.914 kb on - strand, within RALBFv3_RS03335 at 728.914 kb on - strand, within RALBFv3_RS03335 at 729.006 kb on + strand, within RALBFv3_RS03335 at 729.006 kb on + strand, within RALBFv3_RS03335 at 729.007 kb on - strand, within RALBFv3_RS03335 at 729.007 kb on - strand, within RALBFv3_RS03335 at 729.007 kb on - strand, within RALBFv3_RS03335
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days remove 726,237 - RALBFv3_RS03320 0.64 -6.7 726,301 - -2.1 726,352 - -0.9 726,496 + -7.1 726,496 + -4.3 727,657 - RALBFv3_RS03330 0.57 -0.1 728,000 - -2.1 728,038 - -0.1 728,077 - +0.7 728,077 - -0.3 728,077 - +0.4 728,079 - -0.7 728,079 - -0.3 728,083 - +3.0 728,151 - +0.7 728,151 - +0.0 728,187 - -2.8 728,187 - +1.3 728,285 - -0.5 728,457 + RALBFv3_RS03335 0.25 -0.5 728,458 - RALBFv3_RS03335 0.25 -0.3 728,548 - RALBFv3_RS03335 0.34 +0.7 728,548 - RALBFv3_RS03335 0.34 +0.1 728,548 - RALBFv3_RS03335 0.34 -0.5 728,554 + RALBFv3_RS03335 0.34 +0.7 728,554 + RALBFv3_RS03335 0.34 +0.0 728,729 + RALBFv3_RS03335 0.51 -0.2 728,733 + RALBFv3_RS03335 0.52 +0.4 728,734 - RALBFv3_RS03335 0.52 -3.9 728,824 - RALBFv3_RS03335 0.61 +0.9 728,824 - RALBFv3_RS03335 0.61 -0.1 728,892 + RALBFv3_RS03335 0.67 -0.6 728,892 + RALBFv3_RS03335 0.67 -0.4 728,892 + RALBFv3_RS03335 0.67 +0.7 728,893 - RALBFv3_RS03335 0.67 +0.2 728,913 + RALBFv3_RS03335 0.69 -0.5 728,913 + RALBFv3_RS03335 0.69 -0.4 728,913 + RALBFv3_RS03335 0.69 +0.7 728,914 - RALBFv3_RS03335 0.69 +0.9 728,914 - RALBFv3_RS03335 0.69 +0.2 728,914 - RALBFv3_RS03335 0.69 +0.1 729,006 + RALBFv3_RS03335 0.78 +0.1 729,006 + RALBFv3_RS03335 0.78 -2.1 729,007 - RALBFv3_RS03335 0.78 -0.7 729,007 - RALBFv3_RS03335 0.78 +2.3 729,007 - RALBFv3_RS03335 0.78 +0.9
Or see this region's nucleotide sequence