Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03315 and RALBFv3_RS03320 are separated by 234 nucleotides RALBFv3_RS03320 and RALBFv3_RS03325 are separated by 131 nucleotides RALBFv3_RS03325 and RALBFv3_RS03330 are separated by 17 nucleotides
RALBFv3_RS03315: RALBFv3_RS03315 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 723,445 to 725,871
_RS03315
RALBFv3_RS03320: RALBFv3_RS03320 - DNA-directed RNA polymerase subunit omega, at 726,106 to 726,309
_RS03320
RALBFv3_RS03325: RALBFv3_RS03325 - guanylate kinase, at 726,441 to 727,106
_RS03325
RALBFv3_RS03330: RALBFv3_RS03330 - YicC family protein, at 727,124 to 728,059
_RS03330
Position (kb) 726
727
728 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 726.004 kb on - strand at 726.097 kb on - strand at 726.097 kb on - strand at 726.237 kb on - strand, within RALBFv3_RS03320 at 726.301 kb on - strand at 726.352 kb on - strand at 726.496 kb on + strand at 726.496 kb on + strand at 727.657 kb on - strand, within RALBFv3_RS03330 at 728.000 kb on - strand at 728.038 kb on - strand at 728.077 kb on - strand at 728.077 kb on - strand at 728.077 kb on - strand at 728.079 kb on - strand at 728.079 kb on - strand at 728.083 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days remove 726,004 - -0.6 726,097 - +1.4 726,097 - -0.8 726,237 - RALBFv3_RS03320 0.64 -6.7 726,301 - -2.1 726,352 - -0.9 726,496 + -7.1 726,496 + -4.3 727,657 - RALBFv3_RS03330 0.57 -0.1 728,000 - -2.1 728,038 - -0.1 728,077 - +0.7 728,077 - -0.3 728,077 - +0.4 728,079 - -0.7 728,079 - -0.3 728,083 - +3.0
Or see this region's nucleotide sequence