Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3432

Experiment: nitrogen source nitrite 0.5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 0.5mM
3,824,747	+				+0.6
3,824,747	+				+0.7
3,824,748	-				+0.8
3,824,748	-				+0.6
3,824,748	-				-0.4
3,824,786	-				+0.4
3,824,990	-		Pf1N1B4_3431	0.20	+0.8
3,824,990	-		Pf1N1B4_3431	0.20	+2.9
3,824,990	-		Pf1N1B4_3431	0.20	-2.0
3,825,157	+		Pf1N1B4_3431	0.41	+0.3
3,825,157	+		Pf1N1B4_3431	0.41	+0.8
3,825,157	+		Pf1N1B4_3431	0.41	+2.0
3,825,157	+		Pf1N1B4_3431	0.41	+0.5
3,825,158	-		Pf1N1B4_3431	0.41	-0.7
3,825,158	-		Pf1N1B4_3431	0.41	+1.0
3,825,158	-				+3.4
3,825,158	-				+0.4
3,825,160	+		Pf1N1B4_3431	0.41	-0.2
3,825,160	+		Pf1N1B4_3431	0.41	+0.7
3,825,160	+		Pf1N1B4_3431	0.41	-3.0
3,825,160	+		Pf1N1B4_3431	0.41	+2.2
3,825,160	+		Pf1N1B4_3431	0.41	+0.5
3,825,160	+		Pf1N1B4_3431	0.41	-1.4
3,825,160	+		Pf1N1B4_3431	0.41	-1.6
3,825,160	+		Pf1N1B4_3431	0.41	+0.0
3,825,160	+		Pf1N1B4_3431	0.41	-0.8
3,825,161	-		Pf1N1B4_3431	0.42	-0.4
3,825,161	-		Pf1N1B4_3431	0.42	+0.3
3,825,161	-		Pf1N1B4_3431	0.42	+0.1
3,825,161	-		Pf1N1B4_3431	0.42	+0.6
3,825,161	-		Pf1N1B4_3431	0.42	+0.0
3,825,161	-		Pf1N1B4_3431	0.42	-0.2
3,825,161	-		Pf1N1B4_3431	0.42	-0.9
3,825,161	-				+0.2
3,825,161	-		Pf1N1B4_3431	0.42	+0.3
3,825,161	-		Pf1N1B4_3431	0.42	-1.1
3,825,316	+		Pf1N1B4_3431	0.62	+1.5
3,825,317	-		Pf1N1B4_3431	0.62	+0.3
3,825,337	+		Pf1N1B4_3431	0.64	+0.2
3,825,338	-		Pf1N1B4_3431	0.64	+0.2
3,825,466	+		Pf1N1B4_3431	0.81	+0.6
3,825,466	+		Pf1N1B4_3431	0.81	+0.1
3,825,466	+		Pf1N1B4_3431	0.81	-0.5
3,825,466	+		Pf1N1B4_3431	0.81	+0.2
3,825,562	+				+0.0
3,825,562	+				+0.1
3,825,562	+				-1.1
3,825,562	+				+0.4
3,825,562	+				-0.3
3,825,562	+				+1.3
3,825,562	+				-1.0
3,825,563	-				+1.8
3,825,563	-				-0.2
3,825,563	-				+1.5
3,825,563	-				+0.9
3,825,563	-				+1.4
3,825,563	-				+0.4
3,825,583	+				+1.8
3,825,583	+				-0.4
3,825,583	+				-1.7
3,825,584	-				+0.1
3,825,584	-				+1.1
3,825,584	-				+0.1
3,825,584	-				-0.2
3,825,584	-				+0.2
3,825,601	+				-1.1
3,825,601	+				+0.7
3,825,601	+				-1.5
3,825,601	+				+1.5
3,825,601	+				+1.2
3,825,602	-				-0.5
3,825,610	+				-0.5
3,825,610	+				-0.5
3,825,610	+				-1.5
3,825,610	+				-2.6
3,825,610	+				-1.0
3,825,610	+				-0.0
3,825,611	-				-0.7
3,825,611	-				+2.2
3,825,611	-				-0.3
3,825,611	-				+0.1
3,825,611	-				-1.1
3,825,611	-				-0.8
3,825,611	-				-0.8
3,825,740	+				-1.0
3,825,856	+		Pf1N1B4_3432	0.22	+2.7
3,825,856	+		Pf1N1B4_3432	0.22	+1.1
3,825,857	-		Pf1N1B4_3432	0.22	+0.2
3,825,857	-		Pf1N1B4_3432	0.22	+0.9
3,825,857	-		Pf1N1B4_3432	0.22	+0.4
3,825,857	-		Pf1N1B4_3432	0.22	-0.7
3,825,910	+		Pf1N1B4_3432	0.30	+0.2
3,825,964	+		Pf1N1B4_3432	0.38	+0.7
3,825,964	+		Pf1N1B4_3432	0.38	-1.5
3,825,964	+		Pf1N1B4_3432	0.38	-0.7
3,825,964	+		Pf1N1B4_3432	0.38	+0.0
3,825,965	-		Pf1N1B4_3432	0.38	+0.2
3,825,965	-		Pf1N1B4_3432	0.38	-0.5
3,825,965	-		Pf1N1B4_3432	0.38	-0.5
3,825,965	-		Pf1N1B4_3432	0.38	+0.9
3,825,965	-		Pf1N1B4_3432	0.38	-2.4
3,825,965	-		Pf1N1B4_3432	0.38	-1.3
3,825,965	-		Pf1N1B4_3432	0.38	-0.3
3,825,965	-		Pf1N1B4_3432	0.38	+0.2
3,825,965	-		Pf1N1B4_3432	0.38	-0.6
3,825,965	-		Pf1N1B4_3432	0.38	-0.1
3,825,965	-		Pf1N1B4_3432	0.38	-1.7
3,825,965	-		Pf1N1B4_3432	0.38	-0.6
3,825,965	-		Pf1N1B4_3432	0.38	+0.8
3,826,024	+		Pf1N1B4_3432	0.47	-0.3
3,826,024	+		Pf1N1B4_3432	0.47	+0.8
3,826,024	+		Pf1N1B4_3432	0.47	-0.9
3,826,024	+		Pf1N1B4_3432	0.47	+0.4
3,826,025	-		Pf1N1B4_3432	0.47	-1.8
3,826,025	-		Pf1N1B4_3432	0.47	-1.0
3,826,025	-		Pf1N1B4_3432	0.47	-0.1
3,826,025	-		Pf1N1B4_3432	0.47	-0.4
3,826,306	+		Pf1N1B4_3432	0.87	-0.3
3,826,306	+		Pf1N1B4_3432	0.87	-1.5
3,826,307	-		Pf1N1B4_3432	0.88	+0.3
3,826,307	-		Pf1N1B4_3432	0.88	+0.6
3,826,307	-		Pf1N1B4_3432	0.88	+0.9
3,826,374	-				-1.7
3,826,388	+				+0.8
3,826,388	+				+0.2
3,826,388	+				+1.4
3,826,388	+				+0.4
3,826,388	+				+0.8
3,826,388	+				-0.7
3,826,388	+				+0.2
3,826,388	+				-0.4
3,826,388	+				-0.1
3,826,388	+				+0.4
3,826,388	+				-0.9
3,826,388	+				+0.5
3,826,388	+				-1.1
3,826,389	-				-0.2
3,826,389	-				-0.7
3,826,389	-				+1.4
3,826,389	-				+0.3
3,826,389	-				-1.3
3,826,401	+				+0.1
3,826,401	+				-0.1
3,826,401	+				+0.6
3,826,402	-				-0.2
3,826,402	-				+0.7
3,826,402	-				+0.3
3,826,402	-				+0.5
3,826,566	+		Pf1N1B4_3433	0.25	-0.3
3,826,566	+		Pf1N1B4_3433	0.25	-0.9
3,826,566	+		Pf1N1B4_3433	0.25	+0.1
3,826,567	-		Pf1N1B4_3433	0.25	+0.6
3,826,567	-		Pf1N1B4_3433	0.25	+0.5
3,826,567	-		Pf1N1B4_3433	0.25	+0.0
3,826,611	+		Pf1N1B4_3433	0.32	-2.5
3,826,611	+		Pf1N1B4_3433	0.32	-0.4
3,826,612	-				+2.4
3,826,719	+		Pf1N1B4_3433	0.47	-0.4
3,826,719	+		Pf1N1B4_3433	0.47	+0.1
3,826,719	+		Pf1N1B4_3433	0.47	-1.1
3,826,719	+		Pf1N1B4_3433	0.47	-0.2
3,826,720	-		Pf1N1B4_3433	0.47	-1.8
3,826,720	-		Pf1N1B4_3433	0.47	+0.6
3,826,812	+		Pf1N1B4_3433	0.61	-2.1
3,826,813	-		Pf1N1B4_3433	0.61	+1.4
3,826,813	-		Pf1N1B4_3433	0.61	-0.9
3,826,813	-		Pf1N1B4_3433	0.61	+0.4
3,826,813	-		Pf1N1B4_3433	0.61	-0.3
3,826,861	-		Pf1N1B4_3433	0.68	-0.8
3,826,861	-		Pf1N1B4_3433	0.68	+0.3
3,826,861	-		Pf1N1B4_3433	0.68	+0.3
3,826,861	-		Pf1N1B4_3433	0.68	+0.3
3,826,962	+		Pf1N1B4_3433	0.82	+0.4
3,826,962	+		Pf1N1B4_3433	0.82	-0.1
3,826,962	+		Pf1N1B4_3433	0.82	+0.2
3,826,962	+		Pf1N1B4_3433	0.82	-1.8
3,826,963	-		Pf1N1B4_3433	0.82	-0.2
3,826,963	-		Pf1N1B4_3433	0.82	-0.5
3,826,963	-		Pf1N1B4_3433	0.82	-1.1
3,826,963	-		Pf1N1B4_3433	0.82	-0.3
3,826,963	-		Pf1N1B4_3433	0.82	-0.1
3,826,963	-		Pf1N1B4_3433	0.82	+0.6
3,826,963	-		Pf1N1B4_3433	0.82	+0.7
3,826,980	+		Pf1N1B4_3433	0.85	-1.1
3,826,980	+		Pf1N1B4_3433	0.85	+0.2
3,826,980	+		Pf1N1B4_3433	0.85	+0.8
3,826,980	+		Pf1N1B4_3433	0.85	+0.3
3,826,980	+		Pf1N1B4_3433	0.85	+0.9
3,826,980	+		Pf1N1B4_3433	0.85	-1.2
3,826,981	-		Pf1N1B4_3433	0.85	+0.0
3,826,981	-		Pf1N1B4_3433	0.85	+0.3
3,826,981	-		Pf1N1B4_3433	0.85	-2.7
3,827,001	+		Pf1N1B4_3433	0.88	-0.6
3,827,001	+		Pf1N1B4_3433	0.88	-1.0
3,827,001	+		Pf1N1B4_3433	0.88	-1.0
3,827,001	+		Pf1N1B4_3433	0.88	+0.2
3,827,001	+		Pf1N1B4_3433	0.88	+2.2
3,827,002	-		Pf1N1B4_3433	0.88	+1.6
3,827,002	-		Pf1N1B4_3433	0.88	-0.1
3,827,002	-		Pf1N1B4_3433	0.88	+0.1
3,827,002	-		Pf1N1B4_3433	0.88	+0.3
3,827,002	-		Pf1N1B4_3433	0.88	-0.3
3,827,089	-				+1.5
3,827,089	-				-0.3
3,827,182	+				-0.4
3,827,182	+				-0.8
3,827,182	+				+1.1
3,827,182	+				-0.0
3,827,183	-				-0.3
3,827,183	-				-2.2
3,827,183	-				-0.1
3,827,183	-				+0.7
3,827,183	-				-0.4