Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3431 and Pf1N1B4_3432 are separated by 90 nucleotides Pf1N1B4_3432 and Pf1N1B4_3433 overlap by 4 nucleotides Pf1N1B4_3433 and Pf1N1B4_3434 are separated by 1 nucleotides
Pf1N1B4_3431 - ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component (from data) , at 3,824,839 to 3,825,612
_3431
Pf1N1B4_3432 - ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) , at 3,825,703 to 3,826,392
_3432
Pf1N1B4_3433 - ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data) , at 3,826,389 to 3,827,087
_3433
Pf1N1B4_3434 - Succinylglutamate desuccinylase/aspartoacylase, at 3,827,089 to 3,828,201
_3434
Position (kb)
3825
3826
3827 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3824.747 kb on + strand at 3824.747 kb on + strand at 3824.748 kb on - strand at 3824.748 kb on - strand at 3824.748 kb on - strand at 3824.786 kb on - strand at 3824.990 kb on - strand, within Pf1N1B4_3431 at 3824.990 kb on - strand, within Pf1N1B4_3431 at 3824.990 kb on - strand, within Pf1N1B4_3431 at 3825.157 kb on + strand, within Pf1N1B4_3431 at 3825.157 kb on + strand, within Pf1N1B4_3431 at 3825.157 kb on + strand, within Pf1N1B4_3431 at 3825.157 kb on + strand, within Pf1N1B4_3431 at 3825.158 kb on - strand, within Pf1N1B4_3431 at 3825.158 kb on - strand, within Pf1N1B4_3431 at 3825.158 kb on - strand at 3825.158 kb on - strand at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.160 kb on + strand, within Pf1N1B4_3431 at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.161 kb on - strand at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.161 kb on - strand, within Pf1N1B4_3431 at 3825.316 kb on + strand, within Pf1N1B4_3431 at 3825.317 kb on - strand, within Pf1N1B4_3431 at 3825.337 kb on + strand, within Pf1N1B4_3431 at 3825.338 kb on - strand, within Pf1N1B4_3431 at 3825.466 kb on + strand, within Pf1N1B4_3431 at 3825.466 kb on + strand, within Pf1N1B4_3431 at 3825.466 kb on + strand, within Pf1N1B4_3431 at 3825.466 kb on + strand, within Pf1N1B4_3431 at 3825.562 kb on + strand at 3825.562 kb on + strand at 3825.562 kb on + strand at 3825.562 kb on + strand at 3825.562 kb on + strand at 3825.562 kb on + strand at 3825.562 kb on + strand at 3825.563 kb on - strand at 3825.563 kb on - strand at 3825.563 kb on - strand at 3825.563 kb on - strand at 3825.563 kb on - strand at 3825.563 kb on - strand at 3825.583 kb on + strand at 3825.583 kb on + strand at 3825.583 kb on + strand at 3825.584 kb on - strand at 3825.584 kb on - strand at 3825.584 kb on - strand at 3825.584 kb on - strand at 3825.584 kb on - strand at 3825.601 kb on + strand at 3825.601 kb on + strand at 3825.601 kb on + strand at 3825.601 kb on + strand at 3825.601 kb on + strand at 3825.602 kb on - strand at 3825.610 kb on + strand at 3825.610 kb on + strand at 3825.610 kb on + strand at 3825.610 kb on + strand at 3825.610 kb on + strand at 3825.610 kb on + strand at 3825.611 kb on - strand at 3825.611 kb on - strand at 3825.611 kb on - strand at 3825.611 kb on - strand at 3825.611 kb on - strand at 3825.611 kb on - strand at 3825.611 kb on - strand at 3825.740 kb on + strand at 3825.856 kb on + strand, within Pf1N1B4_3432 at 3825.856 kb on + strand, within Pf1N1B4_3432 at 3825.857 kb on - strand, within Pf1N1B4_3432 at 3825.857 kb on - strand, within Pf1N1B4_3432 at 3825.857 kb on - strand, within Pf1N1B4_3432 at 3825.857 kb on - strand, within Pf1N1B4_3432 at 3825.910 kb on + strand, within Pf1N1B4_3432 at 3825.964 kb on + strand, within Pf1N1B4_3432 at 3825.964 kb on + strand, within Pf1N1B4_3432 at 3825.964 kb on + strand, within Pf1N1B4_3432 at 3825.964 kb on + strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3825.965 kb on - strand, within Pf1N1B4_3432 at 3826.024 kb on + strand, within Pf1N1B4_3432 at 3826.024 kb on + strand, within Pf1N1B4_3432 at 3826.024 kb on + strand, within Pf1N1B4_3432 at 3826.024 kb on + strand, within Pf1N1B4_3432 at 3826.025 kb on - strand, within Pf1N1B4_3432 at 3826.025 kb on - strand, within Pf1N1B4_3432 at 3826.025 kb on - strand, within Pf1N1B4_3432 at 3826.025 kb on - strand, within Pf1N1B4_3432 at 3826.306 kb on + strand, within Pf1N1B4_3432 at 3826.306 kb on + strand, within Pf1N1B4_3432 at 3826.307 kb on - strand, within Pf1N1B4_3432 at 3826.307 kb on - strand, within Pf1N1B4_3432 at 3826.307 kb on - strand, within Pf1N1B4_3432 at 3826.374 kb on - strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.388 kb on + strand at 3826.389 kb on - strand at 3826.389 kb on - strand at 3826.389 kb on - strand at 3826.389 kb on - strand at 3826.389 kb on - strand at 3826.401 kb on + strand at 3826.401 kb on + strand at 3826.401 kb on + strand at 3826.402 kb on - strand at 3826.402 kb on - strand at 3826.402 kb on - strand at 3826.402 kb on - strand at 3826.566 kb on + strand, within Pf1N1B4_3433 at 3826.566 kb on + strand, within Pf1N1B4_3433 at 3826.566 kb on + strand, within Pf1N1B4_3433 at 3826.567 kb on - strand, within Pf1N1B4_3433 at 3826.567 kb on - strand, within Pf1N1B4_3433 at 3826.567 kb on - strand, within Pf1N1B4_3433 at 3826.611 kb on + strand, within Pf1N1B4_3433 at 3826.611 kb on + strand, within Pf1N1B4_3433 at 3826.612 kb on - strand at 3826.719 kb on + strand, within Pf1N1B4_3433 at 3826.719 kb on + strand, within Pf1N1B4_3433 at 3826.719 kb on + strand, within Pf1N1B4_3433 at 3826.719 kb on + strand, within Pf1N1B4_3433 at 3826.720 kb on - strand, within Pf1N1B4_3433 at 3826.720 kb on - strand, within Pf1N1B4_3433 at 3826.812 kb on + strand, within Pf1N1B4_3433 at 3826.813 kb on - strand, within Pf1N1B4_3433 at 3826.813 kb on - strand, within Pf1N1B4_3433 at 3826.813 kb on - strand, within Pf1N1B4_3433 at 3826.813 kb on - strand, within Pf1N1B4_3433 at 3826.861 kb on - strand, within Pf1N1B4_3433 at 3826.861 kb on - strand, within Pf1N1B4_3433 at 3826.861 kb on - strand, within Pf1N1B4_3433 at 3826.861 kb on - strand, within Pf1N1B4_3433 at 3826.962 kb on + strand, within Pf1N1B4_3433 at 3826.962 kb on + strand, within Pf1N1B4_3433 at 3826.962 kb on + strand, within Pf1N1B4_3433 at 3826.962 kb on + strand, within Pf1N1B4_3433 at 3826.963 kb on - strand, within Pf1N1B4_3433 at 3826.963 kb on - strand, within Pf1N1B4_3433 at 3826.963 kb on - strand, within Pf1N1B4_3433 at 3826.963 kb on - strand, within Pf1N1B4_3433 at 3826.963 kb on - strand, within Pf1N1B4_3433 at 3826.963 kb on - strand, within Pf1N1B4_3433 at 3826.963 kb on - strand, within Pf1N1B4_3433 at 3826.980 kb on + strand, within Pf1N1B4_3433 at 3826.980 kb on + strand, within Pf1N1B4_3433 at 3826.980 kb on + strand, within Pf1N1B4_3433 at 3826.980 kb on + strand, within Pf1N1B4_3433 at 3826.980 kb on + strand, within Pf1N1B4_3433 at 3826.980 kb on + strand, within Pf1N1B4_3433 at 3826.981 kb on - strand, within Pf1N1B4_3433 at 3826.981 kb on - strand, within Pf1N1B4_3433 at 3826.981 kb on - strand, within Pf1N1B4_3433 at 3827.001 kb on + strand, within Pf1N1B4_3433 at 3827.001 kb on + strand, within Pf1N1B4_3433 at 3827.001 kb on + strand, within Pf1N1B4_3433 at 3827.001 kb on + strand, within Pf1N1B4_3433 at 3827.001 kb on + strand, within Pf1N1B4_3433 at 3827.002 kb on - strand, within Pf1N1B4_3433 at 3827.002 kb on - strand, within Pf1N1B4_3433 at 3827.002 kb on - strand, within Pf1N1B4_3433 at 3827.002 kb on - strand, within Pf1N1B4_3433 at 3827.002 kb on - strand, within Pf1N1B4_3433 at 3827.089 kb on - strand at 3827.089 kb on - strand at 3827.182 kb on + strand at 3827.182 kb on + strand at 3827.182 kb on + strand at 3827.182 kb on + strand at 3827.183 kb on - strand at 3827.183 kb on - strand at 3827.183 kb on - strand at 3827.183 kb on - strand at 3827.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 3,824,747 + +0.6 3,824,747 + +0.7 3,824,748 - +0.8 3,824,748 - +0.6 3,824,748 - -0.4 3,824,786 - +0.4 3,824,990 - Pf1N1B4_3431 0.20 +0.8 3,824,990 - Pf1N1B4_3431 0.20 +2.9 3,824,990 - Pf1N1B4_3431 0.20 -2.0 3,825,157 + Pf1N1B4_3431 0.41 +0.3 3,825,157 + Pf1N1B4_3431 0.41 +0.8 3,825,157 + Pf1N1B4_3431 0.41 +2.0 3,825,157 + Pf1N1B4_3431 0.41 +0.5 3,825,158 - Pf1N1B4_3431 0.41 -0.7 3,825,158 - Pf1N1B4_3431 0.41 +1.0 3,825,158 - +3.4 3,825,158 - +0.4 3,825,160 + Pf1N1B4_3431 0.41 -0.2 3,825,160 + Pf1N1B4_3431 0.41 +0.7 3,825,160 + Pf1N1B4_3431 0.41 -3.0 3,825,160 + Pf1N1B4_3431 0.41 +2.2 3,825,160 + Pf1N1B4_3431 0.41 +0.5 3,825,160 + Pf1N1B4_3431 0.41 -1.4 3,825,160 + Pf1N1B4_3431 0.41 -1.6 3,825,160 + Pf1N1B4_3431 0.41 +0.0 3,825,160 + Pf1N1B4_3431 0.41 -0.8 3,825,161 - Pf1N1B4_3431 0.42 -0.4 3,825,161 - Pf1N1B4_3431 0.42 +0.3 3,825,161 - Pf1N1B4_3431 0.42 +0.1 3,825,161 - Pf1N1B4_3431 0.42 +0.6 3,825,161 - Pf1N1B4_3431 0.42 +0.0 3,825,161 - Pf1N1B4_3431 0.42 -0.2 3,825,161 - Pf1N1B4_3431 0.42 -0.9 3,825,161 - +0.2 3,825,161 - Pf1N1B4_3431 0.42 +0.3 3,825,161 - Pf1N1B4_3431 0.42 -1.1 3,825,316 + Pf1N1B4_3431 0.62 +1.5 3,825,317 - Pf1N1B4_3431 0.62 +0.3 3,825,337 + Pf1N1B4_3431 0.64 +0.2 3,825,338 - Pf1N1B4_3431 0.64 +0.2 3,825,466 + Pf1N1B4_3431 0.81 +0.6 3,825,466 + Pf1N1B4_3431 0.81 +0.1 3,825,466 + Pf1N1B4_3431 0.81 -0.5 3,825,466 + Pf1N1B4_3431 0.81 +0.2 3,825,562 + +0.0 3,825,562 + +0.1 3,825,562 + -1.1 3,825,562 + +0.4 3,825,562 + -0.3 3,825,562 + +1.3 3,825,562 + -1.0 3,825,563 - +1.8 3,825,563 - -0.2 3,825,563 - +1.5 3,825,563 - +0.9 3,825,563 - +1.4 3,825,563 - +0.4 3,825,583 + +1.8 3,825,583 + -0.4 3,825,583 + -1.7 3,825,584 - +0.1 3,825,584 - +1.1 3,825,584 - +0.1 3,825,584 - -0.2 3,825,584 - +0.2 3,825,601 + -1.1 3,825,601 + +0.7 3,825,601 + -1.5 3,825,601 + +1.5 3,825,601 + +1.2 3,825,602 - -0.5 3,825,610 + -0.5 3,825,610 + -0.5 3,825,610 + -1.5 3,825,610 + -2.6 3,825,610 + -1.0 3,825,610 + -0.0 3,825,611 - -0.7 3,825,611 - +2.2 3,825,611 - -0.3 3,825,611 - +0.1 3,825,611 - -1.1 3,825,611 - -0.8 3,825,611 - -0.8 3,825,740 + -1.0 3,825,856 + Pf1N1B4_3432 0.22 +2.7 3,825,856 + Pf1N1B4_3432 0.22 +1.1 3,825,857 - Pf1N1B4_3432 0.22 +0.2 3,825,857 - Pf1N1B4_3432 0.22 +0.9 3,825,857 - Pf1N1B4_3432 0.22 +0.4 3,825,857 - Pf1N1B4_3432 0.22 -0.7 3,825,910 + Pf1N1B4_3432 0.30 +0.2 3,825,964 + Pf1N1B4_3432 0.38 +0.7 3,825,964 + Pf1N1B4_3432 0.38 -1.5 3,825,964 + Pf1N1B4_3432 0.38 -0.7 3,825,964 + Pf1N1B4_3432 0.38 +0.0 3,825,965 - Pf1N1B4_3432 0.38 +0.2 3,825,965 - Pf1N1B4_3432 0.38 -0.5 3,825,965 - Pf1N1B4_3432 0.38 -0.5 3,825,965 - Pf1N1B4_3432 0.38 +0.9 3,825,965 - Pf1N1B4_3432 0.38 -2.4 3,825,965 - Pf1N1B4_3432 0.38 -1.3 3,825,965 - Pf1N1B4_3432 0.38 -0.3 3,825,965 - Pf1N1B4_3432 0.38 +0.2 3,825,965 - Pf1N1B4_3432 0.38 -0.6 3,825,965 - Pf1N1B4_3432 0.38 -0.1 3,825,965 - Pf1N1B4_3432 0.38 -1.7 3,825,965 - Pf1N1B4_3432 0.38 -0.6 3,825,965 - Pf1N1B4_3432 0.38 +0.8 3,826,024 + Pf1N1B4_3432 0.47 -0.3 3,826,024 + Pf1N1B4_3432 0.47 +0.8 3,826,024 + Pf1N1B4_3432 0.47 -0.9 3,826,024 + Pf1N1B4_3432 0.47 +0.4 3,826,025 - Pf1N1B4_3432 0.47 -1.8 3,826,025 - Pf1N1B4_3432 0.47 -1.0 3,826,025 - Pf1N1B4_3432 0.47 -0.1 3,826,025 - Pf1N1B4_3432 0.47 -0.4 3,826,306 + Pf1N1B4_3432 0.87 -0.3 3,826,306 + Pf1N1B4_3432 0.87 -1.5 3,826,307 - Pf1N1B4_3432 0.88 +0.3 3,826,307 - Pf1N1B4_3432 0.88 +0.6 3,826,307 - Pf1N1B4_3432 0.88 +0.9 3,826,374 - -1.7 3,826,388 + +0.8 3,826,388 + +0.2 3,826,388 + +1.4 3,826,388 + +0.4 3,826,388 + +0.8 3,826,388 + -0.7 3,826,388 + +0.2 3,826,388 + -0.4 3,826,388 + -0.1 3,826,388 + +0.4 3,826,388 + -0.9 3,826,388 + +0.5 3,826,388 + -1.1 3,826,389 - -0.2 3,826,389 - -0.7 3,826,389 - +1.4 3,826,389 - +0.3 3,826,389 - -1.3 3,826,401 + +0.1 3,826,401 + -0.1 3,826,401 + +0.6 3,826,402 - -0.2 3,826,402 - +0.7 3,826,402 - +0.3 3,826,402 - +0.5 3,826,566 + Pf1N1B4_3433 0.25 -0.3 3,826,566 + Pf1N1B4_3433 0.25 -0.9 3,826,566 + Pf1N1B4_3433 0.25 +0.1 3,826,567 - Pf1N1B4_3433 0.25 +0.6 3,826,567 - Pf1N1B4_3433 0.25 +0.5 3,826,567 - Pf1N1B4_3433 0.25 +0.0 3,826,611 + Pf1N1B4_3433 0.32 -2.5 3,826,611 + Pf1N1B4_3433 0.32 -0.4 3,826,612 - +2.4 3,826,719 + Pf1N1B4_3433 0.47 -0.4 3,826,719 + Pf1N1B4_3433 0.47 +0.1 3,826,719 + Pf1N1B4_3433 0.47 -1.1 3,826,719 + Pf1N1B4_3433 0.47 -0.2 3,826,720 - Pf1N1B4_3433 0.47 -1.8 3,826,720 - Pf1N1B4_3433 0.47 +0.6 3,826,812 + Pf1N1B4_3433 0.61 -2.1 3,826,813 - Pf1N1B4_3433 0.61 +1.4 3,826,813 - Pf1N1B4_3433 0.61 -0.9 3,826,813 - Pf1N1B4_3433 0.61 +0.4 3,826,813 - Pf1N1B4_3433 0.61 -0.3 3,826,861 - Pf1N1B4_3433 0.68 -0.8 3,826,861 - Pf1N1B4_3433 0.68 +0.3 3,826,861 - Pf1N1B4_3433 0.68 +0.3 3,826,861 - Pf1N1B4_3433 0.68 +0.3 3,826,962 + Pf1N1B4_3433 0.82 +0.4 3,826,962 + Pf1N1B4_3433 0.82 -0.1 3,826,962 + Pf1N1B4_3433 0.82 +0.2 3,826,962 + Pf1N1B4_3433 0.82 -1.8 3,826,963 - Pf1N1B4_3433 0.82 -0.2 3,826,963 - Pf1N1B4_3433 0.82 -0.5 3,826,963 - Pf1N1B4_3433 0.82 -1.1 3,826,963 - Pf1N1B4_3433 0.82 -0.3 3,826,963 - Pf1N1B4_3433 0.82 -0.1 3,826,963 - Pf1N1B4_3433 0.82 +0.6 3,826,963 - Pf1N1B4_3433 0.82 +0.7 3,826,980 + Pf1N1B4_3433 0.85 -1.1 3,826,980 + Pf1N1B4_3433 0.85 +0.2 3,826,980 + Pf1N1B4_3433 0.85 +0.8 3,826,980 + Pf1N1B4_3433 0.85 +0.3 3,826,980 + Pf1N1B4_3433 0.85 +0.9 3,826,980 + Pf1N1B4_3433 0.85 -1.2 3,826,981 - Pf1N1B4_3433 0.85 +0.0 3,826,981 - Pf1N1B4_3433 0.85 +0.3 3,826,981 - Pf1N1B4_3433 0.85 -2.7 3,827,001 + Pf1N1B4_3433 0.88 -0.6 3,827,001 + Pf1N1B4_3433 0.88 -1.0 3,827,001 + Pf1N1B4_3433 0.88 -1.0 3,827,001 + Pf1N1B4_3433 0.88 +0.2 3,827,001 + Pf1N1B4_3433 0.88 +2.2 3,827,002 - Pf1N1B4_3433 0.88 +1.6 3,827,002 - Pf1N1B4_3433 0.88 -0.1 3,827,002 - Pf1N1B4_3433 0.88 +0.1 3,827,002 - Pf1N1B4_3433 0.88 +0.3 3,827,002 - Pf1N1B4_3433 0.88 -0.3 3,827,089 - +1.5 3,827,089 - -0.3 3,827,182 + -0.4 3,827,182 + -0.8 3,827,182 + +1.1 3,827,182 + -0.0 3,827,183 - -0.3 3,827,183 - -2.2 3,827,183 - -0.1 3,827,183 - +0.7 3,827,183 - -0.4
Or see this region's nucleotide sequence