Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS23725

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS06150 and RALBFv3_RS06155 are separated by 198 nucleotidesRALBFv3_RS06155 and RALBFv3_RS23725 are separated by 37 nucleotidesRALBFv3_RS23725 and RALBFv3_RS06165 are separated by 278 nucleotides RALBFv3_RS06150: RALBFv3_RS06150 - GTPase ObgE, at 1,368,891 to 1,369,991 _RS06150 RALBFv3_RS06155: RALBFv3_RS06155 - 50S ribosomal protein L27, at 1,370,190 to 1,370,450 _RS06155 RALBFv3_RS23725: RALBFv3_RS23725 - 50S ribosomal protein L21, at 1,370,488 to 1,370,799 _RS23725 RALBFv3_RS06165: RALBFv3_RS06165 - octaprenyl diphosphate synthase, at 1,371,078 to 1,372,046 _RS06165 Position (kb) 1370 1371Strain fitness (log2 ratio) -1 0 1at 1370.889 kb on - strandat 1370.994 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
remove
1,370,889 - +0.6
1,370,994 + -0.9

Or see this region's nucleotide sequence