Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17550 and RALBFv3_RS17555 are separated by 286 nucleotides RALBFv3_RS17555 and RALBFv3_RS17560 are separated by 106 nucleotides RALBFv3_RS17560 and RALBFv3_RS17565 are separated by 12 nucleotides
RALBFv3_RS17550: RALBFv3_RS17550 - mercuric reductase, at 432,822 to 434,201
_RS17550
RALBFv3_RS17555: RALBFv3_RS17555 - hypothetical protein, at 434,488 to 434,961
_RS17555
RALBFv3_RS17560: RALBFv3_RS17560 - type III effector protein skwp2, at 435,068 to 442,627
_RS17560
RALBFv3_RS17565: RALBFv3_RS17565 - hypothetical protein, at 442,640 to 443,515
_RS17565
Position (kb) 435
436
437
438
439
440
441
442
443 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 434.288 kb on - strand at 434.292 kb on + strand at 434.293 kb on - strand at 434.293 kb on - strand at 434.429 kb on - strand at 434.435 kb on - strand at 434.711 kb on - strand, within RALBFv3_RS17555 at 434.728 kb on - strand, within RALBFv3_RS17555 at 434.785 kb on + strand, within RALBFv3_RS17555 at 434.786 kb on - strand, within RALBFv3_RS17555 at 434.786 kb on - strand, within RALBFv3_RS17555 at 434.786 kb on - strand, within RALBFv3_RS17555 at 434.839 kb on + strand, within RALBFv3_RS17555 at 434.839 kb on + strand, within RALBFv3_RS17555 at 434.842 kb on + strand, within RALBFv3_RS17555 at 434.854 kb on + strand, within RALBFv3_RS17555 at 434.857 kb on + strand, within RALBFv3_RS17555 at 434.857 kb on + strand, within RALBFv3_RS17555 at 434.857 kb on + strand, within RALBFv3_RS17555 at 434.857 kb on + strand, within RALBFv3_RS17555 at 434.857 kb on + strand, within RALBFv3_RS17555 at 434.858 kb on - strand, within RALBFv3_RS17555 at 434.899 kb on + strand, within RALBFv3_RS17555 at 434.899 kb on + strand, within RALBFv3_RS17555 at 434.899 kb on + strand, within RALBFv3_RS17555 at 434.899 kb on + strand, within RALBFv3_RS17555 at 434.899 kb on + strand, within RALBFv3_RS17555 at 434.900 kb on - strand, within RALBFv3_RS17555 at 434.900 kb on - strand, within RALBFv3_RS17555 at 434.900 kb on - strand, within RALBFv3_RS17555 at 434.900 kb on - strand, within RALBFv3_RS17555 at 434.900 kb on - strand, within RALBFv3_RS17555 at 434.944 kb on + strand at 434.944 kb on + strand at 434.945 kb on - strand at 435.280 kb on - strand at 435.280 kb on - strand at 435.280 kb on - strand at 435.280 kb on - strand at 435.387 kb on + strand at 435.388 kb on - strand at 435.414 kb on + strand at 435.414 kb on + strand at 435.415 kb on - strand at 435.415 kb on - strand at 435.415 kb on - strand at 435.492 kb on + strand at 435.492 kb on + strand at 435.493 kb on - strand at 435.493 kb on - strand at 435.493 kb on - strand at 436.044 kb on + strand, within RALBFv3_RS17560 at 436.045 kb on - strand, within RALBFv3_RS17560 at 436.056 kb on + strand, within RALBFv3_RS17560 at 436.088 kb on - strand, within RALBFv3_RS17560 at 436.246 kb on - strand, within RALBFv3_RS17560 at 436.695 kb on + strand, within RALBFv3_RS17560 at 436.695 kb on + strand, within RALBFv3_RS17560 at 436.697 kb on - strand, within RALBFv3_RS17560 at 436.863 kb on + strand, within RALBFv3_RS17560 at 436.863 kb on + strand, within RALBFv3_RS17560 at 436.864 kb on - strand, within RALBFv3_RS17560 at 436.954 kb on - strand, within RALBFv3_RS17560 at 436.954 kb on - strand, within RALBFv3_RS17560 at 437.005 kb on - strand, within RALBFv3_RS17560 at 437.005 kb on - strand, within RALBFv3_RS17560 at 437.319 kb on + strand, within RALBFv3_RS17560 at 437.319 kb on + strand, within RALBFv3_RS17560 at 437.320 kb on - strand, within RALBFv3_RS17560 at 437.320 kb on - strand, within RALBFv3_RS17560 at 437.320 kb on - strand, within RALBFv3_RS17560 at 437.320 kb on - strand, within RALBFv3_RS17560 at 437.320 kb on - strand, within RALBFv3_RS17560 at 437.320 kb on - strand, within RALBFv3_RS17560 at 437.463 kb on + strand, within RALBFv3_RS17560 at 437.464 kb on - strand, within RALBFv3_RS17560 at 437.592 kb on + strand, within RALBFv3_RS17560 at 437.593 kb on - strand, within RALBFv3_RS17560 at 437.913 kb on + strand, within RALBFv3_RS17560 at 437.913 kb on + strand, within RALBFv3_RS17560 at 437.913 kb on + strand, within RALBFv3_RS17560 at 437.914 kb on - strand, within RALBFv3_RS17560 at 437.914 kb on - strand, within RALBFv3_RS17560 at 437.914 kb on - strand, within RALBFv3_RS17560 at 437.920 kb on - strand, within RALBFv3_RS17560 at 438.021 kb on + strand, within RALBFv3_RS17560 at 438.090 kb on + strand, within RALBFv3_RS17560 at 438.162 kb on + strand, within RALBFv3_RS17560 at 438.163 kb on - strand, within RALBFv3_RS17560 at 438.885 kb on + strand, within RALBFv3_RS17560 at 438.885 kb on + strand, within RALBFv3_RS17560 at 438.886 kb on - strand, within RALBFv3_RS17560 at 438.886 kb on - strand, within RALBFv3_RS17560 at 439.205 kb on + strand, within RALBFv3_RS17560 at 439.206 kb on - strand, within RALBFv3_RS17560 at 439.206 kb on - strand, within RALBFv3_RS17560 at 439.305 kb on + strand, within RALBFv3_RS17560 at 439.306 kb on - strand, within RALBFv3_RS17560 at 439.306 kb on - strand, within RALBFv3_RS17560 at 439.306 kb on - strand, within RALBFv3_RS17560 at 439.446 kb on + strand, within RALBFv3_RS17560 at 439.446 kb on + strand, within RALBFv3_RS17560 at 439.447 kb on - strand, within RALBFv3_RS17560 at 439.447 kb on - strand, within RALBFv3_RS17560 at 439.454 kb on + strand, within RALBFv3_RS17560 at 439.454 kb on + strand, within RALBFv3_RS17560 at 439.480 kb on + strand, within RALBFv3_RS17560 at 439.480 kb on + strand, within RALBFv3_RS17560 at 439.512 kb on + strand, within RALBFv3_RS17560 at 439.513 kb on - strand, within RALBFv3_RS17560 at 439.513 kb on - strand, within RALBFv3_RS17560 at 439.663 kb on - strand, within RALBFv3_RS17560 at 439.663 kb on - strand, within RALBFv3_RS17560 at 440.960 kb on + strand, within RALBFv3_RS17560 at 440.960 kb on + strand, within RALBFv3_RS17560 at 440.960 kb on + strand, within RALBFv3_RS17560 at 440.960 kb on + strand, within RALBFv3_RS17560 at 440.960 kb on + strand, within RALBFv3_RS17560 at 440.960 kb on + strand, within RALBFv3_RS17560 at 440.960 kb on + strand, within RALBFv3_RS17560 at 440.961 kb on - strand, within RALBFv3_RS17560 at 440.961 kb on - strand, within RALBFv3_RS17560 at 440.961 kb on - strand, within RALBFv3_RS17560 at 440.961 kb on - strand, within RALBFv3_RS17560 at 441.508 kb on - strand, within RALBFv3_RS17560 at 441.508 kb on - strand, within RALBFv3_RS17560 at 441.626 kb on + strand, within RALBFv3_RS17560 at 441.626 kb on + strand, within RALBFv3_RS17560 at 441.626 kb on + strand, within RALBFv3_RS17560 at 441.627 kb on - strand, within RALBFv3_RS17560 at 441.627 kb on - strand, within RALBFv3_RS17560 at 441.627 kb on - strand, within RALBFv3_RS17560 at 441.627 kb on - strand, within RALBFv3_RS17560 at 441.627 kb on - strand, within RALBFv3_RS17560 at 442.219 kb on + strand at 442.219 kb on + strand at 442.220 kb on - strand at 442.618 kb on + strand at 442.619 kb on - strand at 442.619 kb on - strand at 442.998 kb on + strand, within RALBFv3_RS17565 at 442.998 kb on + strand, within RALBFv3_RS17565 at 442.999 kb on - strand, within RALBFv3_RS17565 at 442.999 kb on - strand, within RALBFv3_RS17565 at 443.001 kb on + strand, within RALBFv3_RS17565 at 443.002 kb on - strand, within RALBFv3_RS17565 at 443.057 kb on - strand, within RALBFv3_RS17565 at 443.118 kb on - strand, within RALBFv3_RS17565 at 443.403 kb on - strand, within RALBFv3_RS17565 at 443.403 kb on - strand, within RALBFv3_RS17565 at 443.421 kb on - strand, within RALBFv3_RS17565 at 443.421 kb on - strand, within RALBFv3_RS17565
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days remove 434,288 - -2.7 434,292 + +0.3 434,293 - -0.8 434,293 - -1.3 434,429 - -0.4 434,435 - +1.7 434,711 - RALBFv3_RS17555 0.47 -1.3 434,728 - RALBFv3_RS17555 0.51 -0.5 434,785 + RALBFv3_RS17555 0.63 -0.8 434,786 - RALBFv3_RS17555 0.63 +0.6 434,786 - RALBFv3_RS17555 0.63 -0.1 434,786 - RALBFv3_RS17555 0.63 +0.2 434,839 + RALBFv3_RS17555 0.74 -0.4 434,839 + RALBFv3_RS17555 0.74 +0.9 434,842 + RALBFv3_RS17555 0.75 -0.6 434,854 + RALBFv3_RS17555 0.77 +0.0 434,857 + RALBFv3_RS17555 0.78 +1.3 434,857 + RALBFv3_RS17555 0.78 +0.2 434,857 + RALBFv3_RS17555 0.78 -0.8 434,857 + RALBFv3_RS17555 0.78 +0.6 434,857 + RALBFv3_RS17555 0.78 -0.9 434,858 - RALBFv3_RS17555 0.78 -2.4 434,899 + RALBFv3_RS17555 0.87 -0.7 434,899 + RALBFv3_RS17555 0.87 -0.1 434,899 + RALBFv3_RS17555 0.87 +2.6 434,899 + RALBFv3_RS17555 0.87 -1.1 434,899 + RALBFv3_RS17555 0.87 +0.9 434,900 - RALBFv3_RS17555 0.87 +0.1 434,900 - RALBFv3_RS17555 0.87 -0.3 434,900 - RALBFv3_RS17555 0.87 +0.6 434,900 - RALBFv3_RS17555 0.87 -0.3 434,900 - RALBFv3_RS17555 0.87 -0.4 434,944 + +0.6 434,944 + +0.5 434,945 - -0.7 435,280 - +3.2 435,280 - -0.0 435,280 - -0.4 435,280 - -0.4 435,387 + +1.8 435,388 - +0.4 435,414 + +0.4 435,414 + +1.5 435,415 - -0.6 435,415 - -1.3 435,415 - +0.2 435,492 + +1.2 435,492 + -1.5 435,493 - -1.2 435,493 - +0.2 435,493 - +2.6 436,044 + RALBFv3_RS17560 0.13 -1.9 436,045 - RALBFv3_RS17560 0.13 -0.9 436,056 + RALBFv3_RS17560 0.13 -0.8 436,088 - RALBFv3_RS17560 0.13 -0.5 436,246 - RALBFv3_RS17560 0.16 -0.1 436,695 + RALBFv3_RS17560 0.22 +1.1 436,695 + RALBFv3_RS17560 0.22 -0.6 436,697 - RALBFv3_RS17560 0.22 +0.5 436,863 + RALBFv3_RS17560 0.24 -1.0 436,863 + RALBFv3_RS17560 0.24 -0.6 436,864 - RALBFv3_RS17560 0.24 -1.0 436,954 - RALBFv3_RS17560 0.25 -1.2 436,954 - RALBFv3_RS17560 0.25 -2.5 437,005 - RALBFv3_RS17560 0.26 +0.6 437,005 - RALBFv3_RS17560 0.26 +2.9 437,319 + RALBFv3_RS17560 0.30 -0.8 437,319 + RALBFv3_RS17560 0.30 +0.0 437,320 - RALBFv3_RS17560 0.30 -1.1 437,320 - RALBFv3_RS17560 0.30 +0.2 437,320 - RALBFv3_RS17560 0.30 -0.6 437,320 - RALBFv3_RS17560 0.30 +0.4 437,320 - RALBFv3_RS17560 0.30 -2.3 437,320 - RALBFv3_RS17560 0.30 -0.4 437,463 + RALBFv3_RS17560 0.32 +0.1 437,464 - RALBFv3_RS17560 0.32 -1.9 437,592 + RALBFv3_RS17560 0.33 +0.8 437,593 - RALBFv3_RS17560 0.33 -0.1 437,913 + RALBFv3_RS17560 0.38 -0.2 437,913 + RALBFv3_RS17560 0.38 +0.2 437,913 + RALBFv3_RS17560 0.38 -0.0 437,914 - RALBFv3_RS17560 0.38 -1.7 437,914 - RALBFv3_RS17560 0.38 -0.8 437,914 - RALBFv3_RS17560 0.38 -1.1 437,920 - RALBFv3_RS17560 0.38 +0.7 438,021 + RALBFv3_RS17560 0.39 -1.9 438,090 + RALBFv3_RS17560 0.40 +1.3 438,162 + RALBFv3_RS17560 0.41 -0.5 438,163 - RALBFv3_RS17560 0.41 +0.5 438,885 + RALBFv3_RS17560 0.50 +1.0 438,885 + RALBFv3_RS17560 0.50 +0.1 438,886 - RALBFv3_RS17560 0.51 -0.9 438,886 - RALBFv3_RS17560 0.51 -1.5 439,205 + RALBFv3_RS17560 0.55 -1.0 439,206 - RALBFv3_RS17560 0.55 +0.1 439,206 - RALBFv3_RS17560 0.55 +0.6 439,305 + RALBFv3_RS17560 0.56 +0.1 439,306 - RALBFv3_RS17560 0.56 +0.3 439,306 - RALBFv3_RS17560 0.56 -0.8 439,306 - RALBFv3_RS17560 0.56 +0.4 439,446 + RALBFv3_RS17560 0.58 -0.5 439,446 + RALBFv3_RS17560 0.58 +0.6 439,447 - RALBFv3_RS17560 0.58 +0.1 439,447 - RALBFv3_RS17560 0.58 +0.6 439,454 + RALBFv3_RS17560 0.58 -0.6 439,454 + RALBFv3_RS17560 0.58 -0.2 439,480 + RALBFv3_RS17560 0.58 -0.6 439,480 + RALBFv3_RS17560 0.58 +0.6 439,512 + RALBFv3_RS17560 0.59 -1.2 439,513 - RALBFv3_RS17560 0.59 +0.6 439,513 - RALBFv3_RS17560 0.59 -2.4 439,663 - RALBFv3_RS17560 0.61 +0.1 439,663 - RALBFv3_RS17560 0.61 -0.9 440,960 + RALBFv3_RS17560 0.78 +0.6 440,960 + RALBFv3_RS17560 0.78 +0.1 440,960 + RALBFv3_RS17560 0.78 -0.1 440,960 + RALBFv3_RS17560 0.78 -2.6 440,960 + RALBFv3_RS17560 0.78 +0.3 440,960 + RALBFv3_RS17560 0.78 +0.3 440,960 + RALBFv3_RS17560 0.78 -0.3 440,961 - RALBFv3_RS17560 0.78 -0.4 440,961 - RALBFv3_RS17560 0.78 -0.4 440,961 - RALBFv3_RS17560 0.78 +1.5 440,961 - RALBFv3_RS17560 0.78 +0.8 441,508 - RALBFv3_RS17560 0.85 +0.2 441,508 - RALBFv3_RS17560 0.85 +0.9 441,626 + RALBFv3_RS17560 0.87 +0.5 441,626 + RALBFv3_RS17560 0.87 +0.6 441,626 + RALBFv3_RS17560 0.87 +0.5 441,627 - RALBFv3_RS17560 0.87 +0.7 441,627 - RALBFv3_RS17560 0.87 +1.6 441,627 - RALBFv3_RS17560 0.87 -1.7 441,627 - RALBFv3_RS17560 0.87 -0.2 441,627 - RALBFv3_RS17560 0.87 -0.4 442,219 + -0.5 442,219 + -0.3 442,220 - +0.0 442,618 + -2.4 442,619 - +0.3 442,619 - +0.7 442,998 + RALBFv3_RS17565 0.41 -0.6 442,998 + RALBFv3_RS17565 0.41 +1.2 442,999 - RALBFv3_RS17565 0.41 -1.1 442,999 - RALBFv3_RS17565 0.41 +0.6 443,001 + RALBFv3_RS17565 0.41 -0.3 443,002 - RALBFv3_RS17565 0.41 -0.1 443,057 - RALBFv3_RS17565 0.48 +1.9 443,118 - RALBFv3_RS17565 0.55 -0.6 443,403 - RALBFv3_RS17565 0.87 -0.1 443,403 - RALBFv3_RS17565 0.87 -0.7 443,421 - RALBFv3_RS17565 0.89 +0.0 443,421 - RALBFv3_RS17565 0.89 +0.0
Or see this region's nucleotide sequence