Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS16585 and RALBFv3_RS16590 are separated by 601 nucleotides RALBFv3_RS16590 and RALBFv3_RS16595 are separated by 231 nucleotides
RALBFv3_RS16585: RALBFv3_RS16585 - hypothetical protein, at 195,524 to 196,846
_RS16585
RALBFv3_RS16590: RALBFv3_RS16590 - rhomboid family intramembrane serine protease, at 197,448 to 199,157
_RS16590
RALBFv3_RS16595: RALBFv3_RS16595 - sensor domain-containing diguanylate cyclase, at 199,389 to 200,906
_RS16595
Position (kb) 197
198
199
200 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 196.579 kb on - strand, within RALBFv3_RS16585 at 196.617 kb on + strand, within RALBFv3_RS16585 at 196.617 kb on + strand, within RALBFv3_RS16585 at 196.617 kb on + strand, within RALBFv3_RS16585 at 196.617 kb on + strand, within RALBFv3_RS16585 at 196.617 kb on + strand, within RALBFv3_RS16585 at 196.617 kb on + strand, within RALBFv3_RS16585 at 196.617 kb on + strand, within RALBFv3_RS16585 at 196.618 kb on - strand, within RALBFv3_RS16585 at 196.618 kb on - strand, within RALBFv3_RS16585 at 196.618 kb on - strand, within RALBFv3_RS16585 at 196.668 kb on + strand, within RALBFv3_RS16585 at 196.669 kb on - strand, within RALBFv3_RS16585 at 196.669 kb on - strand, within RALBFv3_RS16585 at 196.669 kb on - strand, within RALBFv3_RS16585 at 196.832 kb on + strand at 196.833 kb on - strand at 196.904 kb on - strand at 196.956 kb on + strand at 196.957 kb on - strand at 196.996 kb on + strand at 196.996 kb on + strand at 196.996 kb on + strand at 197.092 kb on + strand at 197.249 kb on - strand at 197.443 kb on - strand at 197.449 kb on + strand at 197.450 kb on - strand at 197.450 kb on - strand at 197.620 kb on + strand at 197.620 kb on + strand, within RALBFv3_RS16590 at 197.620 kb on + strand, within RALBFv3_RS16590 at 197.621 kb on - strand, within RALBFv3_RS16590 at 197.621 kb on - strand, within RALBFv3_RS16590 at 197.868 kb on + strand, within RALBFv3_RS16590 at 197.868 kb on + strand, within RALBFv3_RS16590 at 197.868 kb on + strand, within RALBFv3_RS16590 at 197.868 kb on + strand, within RALBFv3_RS16590 at 197.869 kb on - strand, within RALBFv3_RS16590 at 197.869 kb on - strand, within RALBFv3_RS16590 at 197.869 kb on - strand, within RALBFv3_RS16590 at 197.869 kb on - strand, within RALBFv3_RS16590 at 197.869 kb on - strand, within RALBFv3_RS16590 at 198.011 kb on + strand, within RALBFv3_RS16590 at 198.079 kb on + strand, within RALBFv3_RS16590 at 198.271 kb on + strand, within RALBFv3_RS16590 at 198.272 kb on - strand, within RALBFv3_RS16590 at 198.272 kb on - strand, within RALBFv3_RS16590 at 198.272 kb on - strand, within RALBFv3_RS16590 at 198.283 kb on + strand, within RALBFv3_RS16590 at 198.284 kb on - strand, within RALBFv3_RS16590 at 198.794 kb on - strand, within RALBFv3_RS16590 at 198.937 kb on - strand, within RALBFv3_RS16590 at 198.937 kb on - strand, within RALBFv3_RS16590 at 199.254 kb on + strand at 199.254 kb on + strand at 199.254 kb on + strand at 199.255 kb on - strand at 199.390 kb on + strand at 199.391 kb on - strand at 199.391 kb on - strand at 199.460 kb on - strand at 199.460 kb on - strand at 199.783 kb on + strand, within RALBFv3_RS16595 at 199.784 kb on - strand, within RALBFv3_RS16595 at 199.816 kb on - strand, within RALBFv3_RS16595 at 200.056 kb on + strand, within RALBFv3_RS16595 at 200.056 kb on + strand, within RALBFv3_RS16595 at 200.057 kb on - strand, within RALBFv3_RS16595 at 200.057 kb on - strand, within RALBFv3_RS16595 at 200.099 kb on - strand, within RALBFv3_RS16595
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days remove 196,579 - RALBFv3_RS16585 0.80 -0.2 196,617 + RALBFv3_RS16585 0.83 +0.2 196,617 + RALBFv3_RS16585 0.83 +1.1 196,617 + RALBFv3_RS16585 0.83 -0.4 196,617 + RALBFv3_RS16585 0.83 -0.0 196,617 + RALBFv3_RS16585 0.83 -0.4 196,617 + RALBFv3_RS16585 0.83 -0.5 196,617 + RALBFv3_RS16585 0.83 -0.1 196,618 - RALBFv3_RS16585 0.83 -1.4 196,618 - RALBFv3_RS16585 0.83 -0.8 196,618 - RALBFv3_RS16585 0.83 +0.4 196,668 + RALBFv3_RS16585 0.86 -0.2 196,669 - RALBFv3_RS16585 0.87 -1.0 196,669 - RALBFv3_RS16585 0.87 -1.3 196,669 - RALBFv3_RS16585 0.87 -0.4 196,832 + -0.3 196,833 - +0.6 196,904 - +0.6 196,956 + -0.7 196,957 - -0.6 196,996 + -0.6 196,996 + +2.9 196,996 + +1.6 197,092 + +0.0 197,249 - +0.1 197,443 - -1.0 197,449 + -0.5 197,450 - +0.6 197,450 - -2.0 197,620 + +1.6 197,620 + RALBFv3_RS16590 0.10 -0.2 197,620 + RALBFv3_RS16590 0.10 -0.3 197,621 - RALBFv3_RS16590 0.10 +0.9 197,621 - RALBFv3_RS16590 0.10 +0.6 197,868 + RALBFv3_RS16590 0.25 -0.4 197,868 + RALBFv3_RS16590 0.25 +0.4 197,868 + RALBFv3_RS16590 0.25 +0.4 197,868 + RALBFv3_RS16590 0.25 +1.3 197,869 - RALBFv3_RS16590 0.25 +0.3 197,869 - RALBFv3_RS16590 0.25 -0.3 197,869 - RALBFv3_RS16590 0.25 -0.7 197,869 - RALBFv3_RS16590 0.25 +0.0 197,869 - RALBFv3_RS16590 0.25 +0.3 198,011 + RALBFv3_RS16590 0.33 -0.9 198,079 + RALBFv3_RS16590 0.37 -1.8 198,271 + RALBFv3_RS16590 0.48 +0.2 198,272 - RALBFv3_RS16590 0.48 +0.3 198,272 - RALBFv3_RS16590 0.48 -0.6 198,272 - RALBFv3_RS16590 0.48 +0.1 198,283 + RALBFv3_RS16590 0.49 -0.8 198,284 - RALBFv3_RS16590 0.49 +0.7 198,794 - RALBFv3_RS16590 0.79 +0.6 198,937 - RALBFv3_RS16590 0.87 -1.0 198,937 - RALBFv3_RS16590 0.87 -0.5 199,254 + -0.4 199,254 + +0.3 199,254 + +0.2 199,255 - -2.1 199,390 + +0.6 199,391 - -0.0 199,391 - +0.1 199,460 - +0.6 199,460 - -1.5 199,783 + RALBFv3_RS16595 0.26 +0.1 199,784 - RALBFv3_RS16595 0.26 +0.3 199,816 - RALBFv3_RS16595 0.28 +0.6 200,056 + RALBFv3_RS16595 0.44 -2.2 200,056 + RALBFv3_RS16595 0.44 +0.6 200,057 - RALBFv3_RS16595 0.44 +0.0 200,057 - RALBFv3_RS16595 0.44 +0.0 200,099 - RALBFv3_RS16595 0.47 -0.1
Or see this region's nucleotide sequence