Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS16540

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS16535 and RALBFv3_RS16540 overlap by 4 nucleotidesRALBFv3_RS16540 and RALBFv3_RS16545 are separated by 541 nucleotides RALBFv3_RS16535: RALBFv3_RS16535 - catalase, at 178,832 to 181,831 _RS16535 RALBFv3_RS16540: RALBFv3_RS16540 - FAD-dependent oxidoreductase, at 181,828 to 182,913 _RS16540 RALBFv3_RS16545: RALBFv3_RS16545 - spore coat protein U, at 183,455 to 183,973 _RS16545 Position (kb) 181 182 183Strain fitness (log2 ratio) -2 -1 0 1 2at 180.898 kb on + strand, within RALBFv3_RS16535at 180.932 kb on + strand, within RALBFv3_RS16535at 180.932 kb on + strand, within RALBFv3_RS16535at 180.933 kb on - strand, within RALBFv3_RS16535at 181.059 kb on - strand, within RALBFv3_RS16535at 181.216 kb on + strand, within RALBFv3_RS16535at 181.253 kb on + strand, within RALBFv3_RS16535at 181.254 kb on - strand, within RALBFv3_RS16535at 181.304 kb on + strand, within RALBFv3_RS16535at 181.304 kb on + strand, within RALBFv3_RS16535at 181.304 kb on + strand, within RALBFv3_RS16535at 181.305 kb on - strand, within RALBFv3_RS16535at 181.382 kb on + strand, within RALBFv3_RS16535at 181.394 kb on + strand, within RALBFv3_RS16535at 181.395 kb on - strand, within RALBFv3_RS16535at 181.395 kb on - strand, within RALBFv3_RS16535at 181.395 kb on - strand, within RALBFv3_RS16535at 181.404 kb on - strand, within RALBFv3_RS16535at 181.404 kb on - strand, within RALBFv3_RS16535at 181.461 kb on - strand, within RALBFv3_RS16535at 181.461 kb on - strand, within RALBFv3_RS16535at 181.656 kb on - strandat 181.816 kb on + strandat 181.816 kb on + strandat 182.048 kb on + strand, within RALBFv3_RS16540at 182.048 kb on + strand, within RALBFv3_RS16540at 182.061 kb on + strand, within RALBFv3_RS16540at 182.062 kb on - strand, within RALBFv3_RS16540at 182.350 kb on + strand, within RALBFv3_RS16540at 182.350 kb on + strand, within RALBFv3_RS16540at 182.350 kb on + strand, within RALBFv3_RS16540at 182.350 kb on + strand, within RALBFv3_RS16540at 182.350 kb on + strand, within RALBFv3_RS16540at 182.350 kb on + strand, within RALBFv3_RS16540at 182.350 kb on + strand, within RALBFv3_RS16540at 182.350 kb on + strand, within RALBFv3_RS16540at 182.351 kb on - strand, within RALBFv3_RS16540at 182.351 kb on - strand, within RALBFv3_RS16540at 182.351 kb on - strand, within RALBFv3_RS16540at 182.351 kb on - strand, within RALBFv3_RS16540at 182.351 kb on - strand, within RALBFv3_RS16540at 182.386 kb on - strand, within RALBFv3_RS16540at 182.386 kb on - strand, within RALBFv3_RS16540at 182.386 kb on - strand, within RALBFv3_RS16540at 182.420 kb on - strand, within RALBFv3_RS16540at 182.420 kb on - strand, within RALBFv3_RS16540at 182.487 kb on + strand, within RALBFv3_RS16540at 182.487 kb on + strand, within RALBFv3_RS16540at 182.488 kb on - strand, within RALBFv3_RS16540at 182.488 kb on - strand, within RALBFv3_RS16540at 182.540 kb on + strand, within RALBFv3_RS16540at 182.541 kb on - strand, within RALBFv3_RS16540at 182.541 kb on - strand, within RALBFv3_RS16540at 182.701 kb on + strand, within RALBFv3_RS16540at 182.702 kb on - strand, within RALBFv3_RS16540at 182.702 kb on - strand, within RALBFv3_RS16540at 182.759 kb on + strand, within RALBFv3_RS16540at 182.759 kb on + strand, within RALBFv3_RS16540at 182.771 kb on - strand, within RALBFv3_RS16540at 182.803 kb on + strand, within RALBFv3_RS16540at 182.817 kb on + strandat 182.817 kb on + strandat 182.818 kb on - strandat 182.818 kb on - strandat 182.818 kb on - strandat 182.824 kb on + strandat 182.824 kb on + strandat 182.824 kb on + strandat 182.824 kb on + strandat 182.825 kb on - strandat 182.828 kb on - strandat 182.956 kb on + strandat 183.003 kb on - strandat 183.060 kb on + strandat 183.084 kb on - strandat 183.089 kb on + strandat 183.113 kb on + strandat 183.115 kb on + strandat 183.163 kb on + strandat 183.355 kb on - strandat 183.486 kb on + strandat 183.486 kb on + strandat 183.487 kb on - strandat 183.487 kb on - strandat 183.704 kb on + strand, within RALBFv3_RS16545at 183.704 kb on + strand, within RALBFv3_RS16545at 183.704 kb on + strand, within RALBFv3_RS16545at 183.705 kb on - strand, within RALBFv3_RS16545at 183.705 kb on - strand, within RALBFv3_RS16545at 183.801 kb on - strand, within RALBFv3_RS16545

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
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180,898 + RALBFv3_RS16535 0.69 +0.5
180,932 + RALBFv3_RS16535 0.70 -0.1
180,932 + RALBFv3_RS16535 0.70 +0.2
180,933 - RALBFv3_RS16535 0.70 -0.1
181,059 - RALBFv3_RS16535 0.74 -2.1
181,216 + RALBFv3_RS16535 0.79 +0.7
181,253 + RALBFv3_RS16535 0.81 +0.1
181,254 - RALBFv3_RS16535 0.81 +1.8
181,304 + RALBFv3_RS16535 0.82 -0.2
181,304 + RALBFv3_RS16535 0.82 -0.2
181,304 + RALBFv3_RS16535 0.82 -0.4
181,305 - RALBFv3_RS16535 0.82 +0.5
181,382 + RALBFv3_RS16535 0.85 -0.1
181,394 + RALBFv3_RS16535 0.85 +0.5
181,395 - RALBFv3_RS16535 0.85 -0.7
181,395 - RALBFv3_RS16535 0.85 +0.5
181,395 - RALBFv3_RS16535 0.85 +0.3
181,404 - RALBFv3_RS16535 0.86 -0.0
181,404 - RALBFv3_RS16535 0.86 -1.5
181,461 - RALBFv3_RS16535 0.88 +1.3
181,461 - RALBFv3_RS16535 0.88 -0.1
181,656 - -1.8
181,816 + -0.9
181,816 + -2.0
182,048 + RALBFv3_RS16540 0.20 +2.3
182,048 + RALBFv3_RS16540 0.20 -0.0
182,061 + RALBFv3_RS16540 0.21 +0.4
182,062 - RALBFv3_RS16540 0.22 -0.9
182,350 + RALBFv3_RS16540 0.48 -1.0
182,350 + RALBFv3_RS16540 0.48 +0.5
182,350 + RALBFv3_RS16540 0.48 +0.2
182,350 + RALBFv3_RS16540 0.48 -1.2
182,350 + RALBFv3_RS16540 0.48 -0.2
182,350 + RALBFv3_RS16540 0.48 -0.3
182,350 + RALBFv3_RS16540 0.48 +2.5
182,350 + RALBFv3_RS16540 0.48 +2.3
182,351 - RALBFv3_RS16540 0.48 -0.6
182,351 - RALBFv3_RS16540 0.48 -0.2
182,351 - RALBFv3_RS16540 0.48 -1.0
182,351 - RALBFv3_RS16540 0.48 +0.2
182,351 - RALBFv3_RS16540 0.48 +1.8
182,386 - RALBFv3_RS16540 0.51 +0.2
182,386 - RALBFv3_RS16540 0.51 +0.7
182,386 - RALBFv3_RS16540 0.51 -0.0
182,420 - RALBFv3_RS16540 0.55 -0.6
182,420 - RALBFv3_RS16540 0.55 +0.9
182,487 + RALBFv3_RS16540 0.61 -0.8
182,487 + RALBFv3_RS16540 0.61 -0.1
182,488 - RALBFv3_RS16540 0.61 +0.5
182,488 - RALBFv3_RS16540 0.61 +0.5
182,540 + RALBFv3_RS16540 0.66 +0.4
182,541 - RALBFv3_RS16540 0.66 +1.1
182,541 - RALBFv3_RS16540 0.66 +0.7
182,701 + RALBFv3_RS16540 0.80 -0.5
182,702 - RALBFv3_RS16540 0.80 +0.9
182,702 - RALBFv3_RS16540 0.80 +0.8
182,759 + RALBFv3_RS16540 0.86 -1.5
182,759 + RALBFv3_RS16540 0.86 -0.0
182,771 - RALBFv3_RS16540 0.87 -1.2
182,803 + RALBFv3_RS16540 0.90 +0.5
182,817 + -1.9
182,817 + +0.9
182,818 - +0.7
182,818 - -1.2
182,818 - +0.5
182,824 + +1.0
182,824 + -1.0
182,824 + +0.5
182,824 + -1.0
182,825 - +1.0
182,828 - -2.3
182,956 + +0.2
183,003 - -1.0
183,060 + -0.6
183,084 - -0.8
183,089 + +0.2
183,113 + -0.6
183,115 + +0.8
183,163 + -0.3
183,355 - -0.5
183,486 + -0.7
183,486 + +1.4
183,487 - +0.0
183,487 - -1.5
183,704 + RALBFv3_RS16545 0.48 -0.1
183,704 + RALBFv3_RS16545 0.48 +0.5
183,704 + RALBFv3_RS16545 0.48 -0.7
183,705 - RALBFv3_RS16545 0.48 -1.4
183,705 - RALBFv3_RS16545 0.48 -0.6
183,801 - RALBFv3_RS16545 0.67 -2.5

Or see this region's nucleotide sequence