Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS12125

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
2,672,914	+		RALBFv3_RS12115	0.74	+0.0
2,672,914	+		RALBFv3_RS12115	0.74	-0.0
2,672,914	+		RALBFv3_RS12115	0.74	+0.9
2,672,914	+		RALBFv3_RS12115	0.74	-2.4
2,672,915	-		RALBFv3_RS12115	0.74	-1.5
2,672,915	-		RALBFv3_RS12115	0.74	-1.0
2,672,915	-		RALBFv3_RS12115	0.74	+0.8
2,672,915	-		RALBFv3_RS12115	0.74	+0.6
2,672,915	-		RALBFv3_RS12115	0.74	-0.9
2,672,917	-		RALBFv3_RS12115	0.74	-0.7
2,673,042	+				+0.3
2,673,042	+				-1.2
2,673,043	-				+0.7
2,673,043	-				+0.1
2,673,043	-				+2.2
2,673,043	-				-0.8
2,673,043	-				-0.5
2,673,043	-				-1.4
2,673,062	+				+0.3
2,673,063	-				-0.2
2,673,121	-				-0.3
2,673,242	-				-1.5
2,673,242	-				-1.9
2,673,243	+				-0.8
2,673,347	+		RALBFv3_RS12120	0.21	-5.2
2,673,347	+		RALBFv3_RS12120	0.21	-4.1
2,673,347	+		RALBFv3_RS12120	0.21	-4.7
2,673,347	+		RALBFv3_RS12120	0.21	-4.6
2,673,347	+		RALBFv3_RS12120	0.21	-3.7
2,673,347	+		RALBFv3_RS12120	0.21	-6.5
2,673,347	+		RALBFv3_RS12120	0.21	-1.7
2,673,347	+		RALBFv3_RS12120	0.21	-1.7
2,673,347	+		RALBFv3_RS12120	0.21	+0.3
2,673,347	+		RALBFv3_RS12120	0.21	+0.3
2,673,347	+		RALBFv3_RS12120	0.21	-3.6
2,673,347	+		RALBFv3_RS12120	0.21	-2.7
2,673,348	-		RALBFv3_RS12120	0.21	+0.3
2,673,348	-		RALBFv3_RS12120	0.21	-4.6
2,673,348	-		RALBFv3_RS12120	0.21	-2.3
2,673,348	-		RALBFv3_RS12120	0.21	-2.9
2,673,348	-		RALBFv3_RS12120	0.21	-1.3
2,673,348	-		RALBFv3_RS12120	0.21	-5.8
2,673,348	-		RALBFv3_RS12120	0.21	-5.0
2,673,348	-		RALBFv3_RS12120	0.21	-6.0
2,673,348	-		RALBFv3_RS12120	0.21	-5.8
2,673,443	+		RALBFv3_RS12120	0.41	-2.4
2,673,443	+		RALBFv3_RS12120	0.41	-3.5
2,673,443	+		RALBFv3_RS12120	0.41	-0.8
2,673,444	-		RALBFv3_RS12120	0.41	+0.3
2,673,503	-		RALBFv3_RS12120	0.53	-2.5
2,673,503	-		RALBFv3_RS12120	0.53	-5.4
2,673,755	+				-2.2
2,673,755	+				-1.7
2,673,756	-				-0.6
2,673,756	-				+0.3
2,673,756	-				-0.9
2,673,760	+				-1.0
2,673,760	+				+1.1
2,673,760	+				-1.3
2,673,761	-				-0.2
2,673,761	-				-0.5
2,673,761	-				-0.2
2,673,761	-				-0.1
2,673,774	+				-0.5
2,673,775	-				-0.0
2,673,827	+				-1.2
2,673,828	-				+0.7
2,674,044	+		RALBFv3_RS12125	0.13	+0.3
2,674,083	+		RALBFv3_RS12125	0.15	+0.3
2,674,083	+		RALBFv3_RS12125	0.15	-0.6
2,674,084	-		RALBFv3_RS12125	0.15	-0.9
2,674,189	-		RALBFv3_RS12125	0.21	-2.0
2,674,189	-		RALBFv3_RS12125	0.21	-2.1
2,674,215	+		RALBFv3_RS12125	0.23	-0.6
2,674,215	+		RALBFv3_RS12125	0.23	+0.3
2,674,277	+		RALBFv3_RS12125	0.26	-0.4
2,674,277	+		RALBFv3_RS12125	0.26	-0.7
2,674,278	-		RALBFv3_RS12125	0.26	-1.7
2,674,278	-		RALBFv3_RS12125	0.26	-0.4
2,674,278	-		RALBFv3_RS12125	0.26	-0.2
2,674,350	+		RALBFv3_RS12125	0.31	+0.3
2,674,350	+		RALBFv3_RS12125	0.31	-0.2
2,674,350	+		RALBFv3_RS12125	0.31	-1.2
2,674,350	+		RALBFv3_RS12125	0.31	-1.8
2,674,350	+		RALBFv3_RS12125	0.31	-1.5
2,674,350	+		RALBFv3_RS12125	0.31	-2.0
2,674,351	-		RALBFv3_RS12125	0.31	-2.2
2,674,448	+		RALBFv3_RS12125	0.36	-0.6
2,674,448	+		RALBFv3_RS12125	0.36	-1.3
2,674,448	+		RALBFv3_RS12125	0.36	-1.0
2,674,449	-		RALBFv3_RS12125	0.36	-1.0
2,674,449	-		RALBFv3_RS12125	0.36	-2.5
2,674,449	-		RALBFv3_RS12125	0.36	+0.0
2,674,640	+		RALBFv3_RS12125	0.48	-1.0
2,674,640	+		RALBFv3_RS12125	0.48	-0.1
2,674,640	+		RALBFv3_RS12125	0.48	-1.9
2,674,662	+		RALBFv3_RS12125	0.49	-1.2
2,674,663	-		RALBFv3_RS12125	0.49	-0.3
2,674,893	+		RALBFv3_RS12125	0.62	-1.5
2,674,893	+		RALBFv3_RS12125	0.62	-0.8
2,674,893	+		RALBFv3_RS12125	0.62	-1.0
2,674,893	+		RALBFv3_RS12125	0.62	+2.9
2,674,894	-		RALBFv3_RS12125	0.62	-0.1
2,674,894	-		RALBFv3_RS12125	0.62	+0.1
2,675,052	+		RALBFv3_RS12125	0.72	-1.7
2,675,053	-		RALBFv3_RS12125	0.72	-1.6
2,675,205	+		RALBFv3_RS12125	0.81	-1.9
2,675,205	+		RALBFv3_RS12125	0.81	+1.3
2,675,205	+		RALBFv3_RS12125	0.81	+2.1
2,675,205	+		RALBFv3_RS12125	0.81	-0.8
2,675,206	-		RALBFv3_RS12125	0.81	-1.9
2,675,206	-		RALBFv3_RS12125	0.81	-4.0
2,675,206	-		RALBFv3_RS12125	0.81	-1.5
2,675,206	-		RALBFv3_RS12125	0.81	-0.6
2,675,206	-		RALBFv3_RS12125	0.81	-2.1
2,675,206	-		RALBFv3_RS12125	0.81	-1.1
2,675,206	-		RALBFv3_RS12125	0.81	+1.6
2,675,253	+		RALBFv3_RS12125	0.83	+0.6
2,675,254	-		RALBFv3_RS12125	0.84	+0.3
2,675,319	+		RALBFv3_RS12125	0.87	-0.4
2,675,319	+		RALBFv3_RS12125	0.87	-0.5
2,675,319	+		RALBFv3_RS12125	0.87	-0.4
2,675,320	-		RALBFv3_RS12125	0.87	-0.7
2,675,370	+				-1.1
2,675,371	-				-2.3
2,675,371	-				-1.9
2,675,532	+				+0.3
2,675,533	-				+0.5
2,675,533	-				-0.0
2,675,533	-				-1.2
2,675,877	+		RALBFv3_RS12130	0.55	-0.1
2,675,877	+		RALBFv3_RS12130	0.55	-1.2
2,675,893	+		RALBFv3_RS12130	0.58	+1.1
2,675,894	-		RALBFv3_RS12130	0.58	-0.2
2,675,962	+		RALBFv3_RS12130	0.70	-0.4
2,675,962	+		RALBFv3_RS12130	0.70	-0.1
2,675,963	-		RALBFv3_RS12130	0.70	-3.4
2,675,963	-		RALBFv3_RS12130	0.70	+0.5
2,675,963	-		RALBFv3_RS12130	0.70	-4.0
2,676,034	+		RALBFv3_RS12130	0.82	-0.4
2,676,461	+		RALBFv3_RS12135	0.29	-0.7
2,676,467	+		RALBFv3_RS12135	0.30	-1.9
2,676,467	+		RALBFv3_RS12135	0.30	-1.0
2,676,467	+		RALBFv3_RS12135	0.30	-3.0
2,676,467	+		RALBFv3_RS12135	0.30	-0.7
2,676,468	-		RALBFv3_RS12135	0.30	-0.1
2,676,468	-		RALBFv3_RS12135	0.30	+0.4
2,676,468	-		RALBFv3_RS12135	0.30	-1.3