Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS07525

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS07515 and RALBFv3_RS07520 are separated by 192 nucleotidesRALBFv3_RS07520 and RALBFv3_RS07525 are separated by 14 nucleotidesRALBFv3_RS07525 and RALBFv3_RS07530 are separated by 155 nucleotides RALBFv3_RS07515: RALBFv3_RS07515 - cation transporter, at 1,652,054 to 1,653,214 _RS07515 RALBFv3_RS07520: RALBFv3_RS07520 - DNA-binding response regulator, at 1,653,407 to 1,654,075 _RS07520 RALBFv3_RS07525: RALBFv3_RS07525 - hybrid sensor histidine kinase/response regulator, at 1,654,090 to 1,657,089 _RS07525 RALBFv3_RS07530: RALBFv3_RS07530 - NAD(P)/FAD-dependent oxidoreductase, at 1,657,245 to 1,658,858 _RS07530 Position (kb) 1654 1655 1656 1657 1658Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1653.285 kb on + strandat 1653.285 kb on + strandat 1653.286 kb on - strandat 1653.286 kb on - strandat 1653.465 kb on + strandat 1653.562 kb on + strand, within RALBFv3_RS07520at 1653.563 kb on + strand, within RALBFv3_RS07520at 1653.578 kb on + strand, within RALBFv3_RS07520at 1653.755 kb on - strand, within RALBFv3_RS07520at 1653.755 kb on - strand, within RALBFv3_RS07520at 1653.794 kb on + strand, within RALBFv3_RS07520at 1653.908 kb on + strand, within RALBFv3_RS07520at 1653.908 kb on + strand, within RALBFv3_RS07520at 1653.908 kb on + strand, within RALBFv3_RS07520at 1653.909 kb on - strand, within RALBFv3_RS07520at 1653.909 kb on - strand, within RALBFv3_RS07520at 1653.909 kb on - strand, within RALBFv3_RS07520at 1653.909 kb on - strand, within RALBFv3_RS07520at 1654.196 kb on - strandat 1654.196 kb on - strandat 1654.196 kb on - strandat 1654.196 kb on - strandat 1654.465 kb on + strand, within RALBFv3_RS07525at 1654.466 kb on - strand, within RALBFv3_RS07525at 1654.466 kb on - strand, within RALBFv3_RS07525at 1654.466 kb on - strand, within RALBFv3_RS07525at 1654.879 kb on + strand, within RALBFv3_RS07525at 1654.879 kb on + strand, within RALBFv3_RS07525at 1654.879 kb on + strand, within RALBFv3_RS07525at 1654.879 kb on + strand, within RALBFv3_RS07525at 1654.880 kb on - strand, within RALBFv3_RS07525at 1654.880 kb on - strand, within RALBFv3_RS07525at 1654.880 kb on - strand, within RALBFv3_RS07525at 1654.880 kb on - strand, within RALBFv3_RS07525at 1654.880 kb on - strand, within RALBFv3_RS07525at 1654.880 kb on - strand, within RALBFv3_RS07525at 1654.880 kb on - strand, within RALBFv3_RS07525at 1654.880 kb on - strand, within RALBFv3_RS07525at 1655.131 kb on + strand, within RALBFv3_RS07525at 1655.132 kb on - strand, within RALBFv3_RS07525at 1655.132 kb on - strand, within RALBFv3_RS07525at 1655.564 kb on + strand, within RALBFv3_RS07525at 1655.624 kb on + strand, within RALBFv3_RS07525at 1655.624 kb on + strand, within RALBFv3_RS07525at 1655.625 kb on - strand, within RALBFv3_RS07525at 1655.625 kb on - strand, within RALBFv3_RS07525at 1655.625 kb on - strand, within RALBFv3_RS07525at 1655.745 kb on - strand, within RALBFv3_RS07525at 1656.068 kb on + strand, within RALBFv3_RS07525at 1656.068 kb on + strand, within RALBFv3_RS07525at 1656.114 kb on + strand, within RALBFv3_RS07525at 1656.115 kb on + strand, within RALBFv3_RS07525at 1656.115 kb on + strand, within RALBFv3_RS07525at 1657.077 kb on + strandat 1657.077 kb on + strandat 1657.137 kb on - strandat 1657.137 kb on - strandat 1657.497 kb on + strand, within RALBFv3_RS07530at 1657.497 kb on + strand, within RALBFv3_RS07530at 1657.497 kb on + strand, within RALBFv3_RS07530at 1657.497 kb on + strand, within RALBFv3_RS07530at 1657.498 kb on - strand, within RALBFv3_RS07530at 1657.498 kb on - strand, within RALBFv3_RS07530at 1657.540 kb on - strand, within RALBFv3_RS07530at 1657.540 kb on - strand, within RALBFv3_RS07530at 1657.540 kb on - strand, within RALBFv3_RS07530at 1657.540 kb on - strand, within RALBFv3_RS07530at 1657.540 kb on - strand, within RALBFv3_RS07530at 1657.566 kb on + strand, within RALBFv3_RS07530at 1657.693 kb on - strand, within RALBFv3_RS07530at 1658.025 kb on + strand, within RALBFv3_RS07530at 1658.025 kb on + strand, within RALBFv3_RS07530at 1658.026 kb on - strand, within RALBFv3_RS07530at 1658.026 kb on - strand, within RALBFv3_RS07530

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
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1,653,285 + +0.1
1,653,285 + -2.7
1,653,286 - -1.9
1,653,286 - -2.9
1,653,465 + -0.6
1,653,562 + RALBFv3_RS07520 0.23 +0.1
1,653,563 + RALBFv3_RS07520 0.23 +0.7
1,653,578 + RALBFv3_RS07520 0.26 +1.1
1,653,755 - RALBFv3_RS07520 0.52 -1.5
1,653,755 - RALBFv3_RS07520 0.52 +0.4
1,653,794 + RALBFv3_RS07520 0.58 -0.1
1,653,908 + RALBFv3_RS07520 0.75 -0.9
1,653,908 + RALBFv3_RS07520 0.75 +1.7
1,653,908 + RALBFv3_RS07520 0.75 +0.2
1,653,909 - RALBFv3_RS07520 0.75 -1.7
1,653,909 - RALBFv3_RS07520 0.75 -0.1
1,653,909 - RALBFv3_RS07520 0.75 +0.1
1,653,909 - RALBFv3_RS07520 0.75 +1.7
1,654,196 - -0.2
1,654,196 - +1.3
1,654,196 - -0.2
1,654,196 - +0.5
1,654,465 + RALBFv3_RS07525 0.12 +0.4
1,654,466 - RALBFv3_RS07525 0.13 -3.7
1,654,466 - RALBFv3_RS07525 0.13 +0.3
1,654,466 - RALBFv3_RS07525 0.13 +0.6
1,654,879 + RALBFv3_RS07525 0.26 -0.1
1,654,879 + RALBFv3_RS07525 0.26 +0.1
1,654,879 + RALBFv3_RS07525 0.26 -0.5
1,654,879 + RALBFv3_RS07525 0.26 -0.9
1,654,880 - RALBFv3_RS07525 0.26 -0.9
1,654,880 - RALBFv3_RS07525 0.26 +1.3
1,654,880 - RALBFv3_RS07525 0.26 +0.4
1,654,880 - RALBFv3_RS07525 0.26 +0.0
1,654,880 - RALBFv3_RS07525 0.26 +0.3
1,654,880 - RALBFv3_RS07525 0.26 -1.5
1,654,880 - RALBFv3_RS07525 0.26 +0.5
1,654,880 - RALBFv3_RS07525 0.26 +0.5
1,655,131 + RALBFv3_RS07525 0.35 +0.6
1,655,132 - RALBFv3_RS07525 0.35 -0.5
1,655,132 - RALBFv3_RS07525 0.35 +0.9
1,655,564 + RALBFv3_RS07525 0.49 -1.0
1,655,624 + RALBFv3_RS07525 0.51 -0.8
1,655,624 + RALBFv3_RS07525 0.51 +0.3
1,655,625 - RALBFv3_RS07525 0.51 -1.0
1,655,625 - RALBFv3_RS07525 0.51 -1.9
1,655,625 - RALBFv3_RS07525 0.51 -0.0
1,655,745 - RALBFv3_RS07525 0.55 -1.7
1,656,068 + RALBFv3_RS07525 0.66 -0.2
1,656,068 + RALBFv3_RS07525 0.66 -1.0
1,656,114 + RALBFv3_RS07525 0.67 +2.4
1,656,115 + RALBFv3_RS07525 0.68 -0.2
1,656,115 + RALBFv3_RS07525 0.68 -0.5
1,657,077 + -1.1
1,657,077 + +0.1
1,657,137 - +0.7
1,657,137 - -0.4
1,657,497 + RALBFv3_RS07530 0.16 +1.2
1,657,497 + RALBFv3_RS07530 0.16 -1.4
1,657,497 + RALBFv3_RS07530 0.16 -0.8
1,657,497 + RALBFv3_RS07530 0.16 +0.1
1,657,498 - RALBFv3_RS07530 0.16 +0.9
1,657,498 - RALBFv3_RS07530 0.16 +0.0
1,657,540 - RALBFv3_RS07530 0.18 +0.5
1,657,540 - RALBFv3_RS07530 0.18 -0.6
1,657,540 - RALBFv3_RS07530 0.18 -0.0
1,657,540 - RALBFv3_RS07530 0.18 +2.3
1,657,540 - RALBFv3_RS07530 0.18 +0.1
1,657,566 + RALBFv3_RS07530 0.20 +0.9
1,657,693 - RALBFv3_RS07530 0.28 +0.1
1,658,025 + RALBFv3_RS07530 0.48 +2.4
1,658,025 + RALBFv3_RS07530 0.48 -0.8
1,658,026 - RALBFv3_RS07530 0.48 -1.9
1,658,026 - RALBFv3_RS07530 0.48 +0.4

Or see this region's nucleotide sequence