Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS07510

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS07500 and RALBFv3_RS07505 are separated by 46 nucleotidesRALBFv3_RS07505 and RALBFv3_RS07510 are separated by 258 nucleotidesRALBFv3_RS07510 and RALBFv3_RS07515 are separated by 14 nucleotides RALBFv3_RS07500: RALBFv3_RS07500 - hypothetical protein, at 1,650,083 to 1,650,301 _RS07500 RALBFv3_RS07505: RALBFv3_RS07505 - hypothetical protein, at 1,650,348 to 1,650,569 _RS07505 RALBFv3_RS07510: RALBFv3_RS07510 - hypothetical protein, at 1,650,828 to 1,652,039 _RS07510 RALBFv3_RS07515: RALBFv3_RS07515 - cation transporter, at 1,652,054 to 1,653,214 _RS07515 Position (kb) 1650 1651 1652 1653Strain fitness (log2 ratio) -2 -1 0 1 2at 1649.845 kb on + strandat 1649.845 kb on + strandat 1649.852 kb on + strandat 1649.852 kb on + strandat 1649.853 kb on - strandat 1649.853 kb on - strandat 1649.904 kb on - strandat 1649.968 kb on + strandat 1650.072 kb on - strandat 1650.084 kb on + strandat 1650.084 kb on + strandat 1650.311 kb on + strandat 1650.311 kb on + strandat 1650.311 kb on + strandat 1650.311 kb on + strandat 1650.311 kb on + strandat 1650.312 kb on - strandat 1650.349 kb on + strandat 1650.349 kb on + strandat 1650.349 kb on + strandat 1650.407 kb on - strand, within RALBFv3_RS07505at 1650.697 kb on + strandat 1650.698 kb on - strandat 1650.883 kb on + strandat 1650.883 kb on + strandat 1650.883 kb on + strandat 1650.884 kb on - strandat 1650.884 kb on - strandat 1651.062 kb on + strand, within RALBFv3_RS07510at 1651.062 kb on + strand, within RALBFv3_RS07510at 1651.237 kb on - strand, within RALBFv3_RS07510at 1651.338 kb on + strand, within RALBFv3_RS07510at 1651.338 kb on + strand, within RALBFv3_RS07510at 1651.378 kb on + strand, within RALBFv3_RS07510at 1651.410 kb on + strand, within RALBFv3_RS07510at 1651.432 kb on + strand, within RALBFv3_RS07510at 1651.433 kb on - strand, within RALBFv3_RS07510at 1651.433 kb on - strand, within RALBFv3_RS07510at 1651.620 kb on + strand, within RALBFv3_RS07510at 1651.621 kb on - strand, within RALBFv3_RS07510at 1651.621 kb on - strand, within RALBFv3_RS07510at 1651.623 kb on + strand, within RALBFv3_RS07510at 1651.623 kb on + strand, within RALBFv3_RS07510at 1651.623 kb on + strand, within RALBFv3_RS07510at 1651.624 kb on - strand, within RALBFv3_RS07510at 1651.624 kb on - strand, within RALBFv3_RS07510at 1651.624 kb on - strand, within RALBFv3_RS07510at 1651.624 kb on - strand, within RALBFv3_RS07510at 1651.624 kb on - strand, within RALBFv3_RS07510at 1651.629 kb on + strand, within RALBFv3_RS07510at 1651.630 kb on - strand, within RALBFv3_RS07510at 1651.630 kb on - strand, within RALBFv3_RS07510at 1651.631 kb on - strand, within RALBFv3_RS07510at 1652.199 kb on + strand, within RALBFv3_RS07515at 1652.199 kb on + strand, within RALBFv3_RS07515at 1652.200 kb on - strand, within RALBFv3_RS07515at 1652.200 kb on - strand, within RALBFv3_RS07515at 1652.304 kb on + strand, within RALBFv3_RS07515at 1652.784 kb on + strand, within RALBFv3_RS07515at 1652.784 kb on + strand, within RALBFv3_RS07515at 1652.784 kb on + strand, within RALBFv3_RS07515at 1652.785 kb on - strand, within RALBFv3_RS07515at 1652.785 kb on - strand, within RALBFv3_RS07515at 1652.956 kb on - strand, within RALBFv3_RS07515

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
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1,649,845 + -0.7
1,649,845 + +0.1
1,649,852 + +0.1
1,649,852 + -0.5
1,649,853 - -0.4
1,649,853 - +0.1
1,649,904 - +0.0
1,649,968 + +0.1
1,650,072 - +0.3
1,650,084 + -0.9
1,650,084 + +0.7
1,650,311 + -0.5
1,650,311 + +2.4
1,650,311 + -0.6
1,650,311 + -0.3
1,650,311 + +0.1
1,650,312 - -1.9
1,650,349 + +1.8
1,650,349 + +1.1
1,650,349 + -0.3
1,650,407 - RALBFv3_RS07505 0.27 +0.1
1,650,697 + +0.7
1,650,698 - +1.1
1,650,883 + +0.5
1,650,883 + -0.5
1,650,883 + -0.8
1,650,884 - +0.3
1,650,884 - -0.2
1,651,062 + RALBFv3_RS07510 0.19 -0.1
1,651,062 + RALBFv3_RS07510 0.19 +0.1
1,651,237 - RALBFv3_RS07510 0.34 -0.8
1,651,338 + RALBFv3_RS07510 0.42 +0.1
1,651,338 + RALBFv3_RS07510 0.42 -0.6
1,651,378 + RALBFv3_RS07510 0.45 +0.5
1,651,410 + RALBFv3_RS07510 0.48 -2.2
1,651,432 + RALBFv3_RS07510 0.50 -0.4
1,651,433 - RALBFv3_RS07510 0.50 -0.8
1,651,433 - RALBFv3_RS07510 0.50 -1.5
1,651,620 + RALBFv3_RS07510 0.65 -0.0
1,651,621 - RALBFv3_RS07510 0.65 +0.1
1,651,621 - RALBFv3_RS07510 0.65 -1.5
1,651,623 + RALBFv3_RS07510 0.66 +0.1
1,651,623 + RALBFv3_RS07510 0.66 -0.2
1,651,623 + RALBFv3_RS07510 0.66 +0.1
1,651,624 - RALBFv3_RS07510 0.66 +1.3
1,651,624 - RALBFv3_RS07510 0.66 +0.2
1,651,624 - RALBFv3_RS07510 0.66 -1.3
1,651,624 - RALBFv3_RS07510 0.66 -2.6
1,651,624 - RALBFv3_RS07510 0.66 -0.6
1,651,629 + RALBFv3_RS07510 0.66 +0.0
1,651,630 - RALBFv3_RS07510 0.66 -0.3
1,651,630 - RALBFv3_RS07510 0.66 -2.6
1,651,631 - RALBFv3_RS07510 0.66 +0.0
1,652,199 + RALBFv3_RS07515 0.12 +0.9
1,652,199 + RALBFv3_RS07515 0.12 +0.1
1,652,200 - RALBFv3_RS07515 0.13 +0.8
1,652,200 - RALBFv3_RS07515 0.13 +0.9
1,652,304 + RALBFv3_RS07515 0.22 +2.1
1,652,784 + RALBFv3_RS07515 0.63 -0.8
1,652,784 + RALBFv3_RS07515 0.63 +0.7
1,652,784 + RALBFv3_RS07515 0.63 -0.2
1,652,785 - RALBFv3_RS07515 0.63 +0.3
1,652,785 - RALBFv3_RS07515 0.63 +1.5
1,652,956 - RALBFv3_RS07515 0.78 -0.9

Or see this region's nucleotide sequence