Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS06415

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS06410 and RALBFv3_RS06415 are separated by 326 nucleotidesRALBFv3_RS06415 and RALBFv3_RS06420 are separated by 105 nucleotides RALBFv3_RS06410: RALBFv3_RS06410 - amidohydrolase, at 1,430,796 to 1,431,980 _RS06410 RALBFv3_RS06415: RALBFv3_RS06415 - 5S ribosomal RNA, at 1,432,307 to 1,432,419 _RS06415 RALBFv3_RS06420: RALBFv3_RS06420 - 23S ribosomal RNA, at 1,432,525 to 1,435,416 _RS06420 Position (kb) 1432 1433Strain fitness (log2 ratio) -1 0 1at 1431.639 kb on + strand, within RALBFv3_RS06410at 1431.973 kb on + strandat 1432.051 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
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1,431,639 + RALBFv3_RS06410 0.71 -1.3
1,431,973 + -0.5
1,432,051 + -0.5

Or see this region's nucleotide sequence