Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS02480

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS02475 and RALBFv3_RS02480 overlap by 17 nucleotidesRALBFv3_RS02480 and RALBFv3_RS02485 are separated by 130 nucleotides RALBFv3_RS02475: RALBFv3_RS02475 - activator of HSP90 ATPase, at 554,937 to 555,887 _RS02475 RALBFv3_RS02480: RALBFv3_RS02480 - transcriptional regulator, at 555,871 to 556,227 _RS02480 RALBFv3_RS02485: RALBFv3_RS02485 - ATP-binding protein, at 556,358 to 558,673 _RS02485 Position (kb) 555 556 557Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 554.934 kb on + strandat 554.935 kb on - strandat 555.167 kb on - strand, within RALBFv3_RS02475at 555.347 kb on - strand, within RALBFv3_RS02475at 555.506 kb on - strand, within RALBFv3_RS02475at 555.506 kb on - strand, within RALBFv3_RS02475at 555.664 kb on + strand, within RALBFv3_RS02475at 555.921 kb on - strand, within RALBFv3_RS02480at 556.239 kb on + strandat 556.240 kb on - strandat 556.256 kb on + strandat 556.257 kb on - strandat 556.752 kb on + strand, within RALBFv3_RS02485at 556.752 kb on + strand, within RALBFv3_RS02485at 556.875 kb on + strand, within RALBFv3_RS02485at 556.875 kb on + strand, within RALBFv3_RS02485at 556.875 kb on + strand, within RALBFv3_RS02485at 556.875 kb on + strand, within RALBFv3_RS02485at 556.875 kb on + strand, within RALBFv3_RS02485at 556.916 kb on + strand, within RALBFv3_RS02485at 556.916 kb on + strand, within RALBFv3_RS02485at 556.916 kb on + strand, within RALBFv3_RS02485at 556.917 kb on - strand, within RALBFv3_RS02485at 556.917 kb on - strand, within RALBFv3_RS02485at 556.917 kb on - strand, within RALBFv3_RS02485at 557.059 kb on - strand, within RALBFv3_RS02485at 557.059 kb on - strand, within RALBFv3_RS02485

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
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554,934 + +1.9
554,935 - -0.0
555,167 - RALBFv3_RS02475 0.24 +1.3
555,347 - RALBFv3_RS02475 0.43 -0.4
555,506 - RALBFv3_RS02475 0.60 +0.6
555,506 - RALBFv3_RS02475 0.60 -0.3
555,664 + RALBFv3_RS02475 0.76 +0.6
555,921 - RALBFv3_RS02480 0.14 +1.5
556,239 + +0.9
556,240 - +0.5
556,256 + +0.4
556,257 - -0.4
556,752 + RALBFv3_RS02485 0.17 -0.2
556,752 + RALBFv3_RS02485 0.17 -0.0
556,875 + RALBFv3_RS02485 0.22 -1.2
556,875 + RALBFv3_RS02485 0.22 -0.7
556,875 + RALBFv3_RS02485 0.22 -3.3
556,875 + RALBFv3_RS02485 0.22 -0.7
556,875 + RALBFv3_RS02485 0.22 +0.6
556,916 + RALBFv3_RS02485 0.24 +0.1
556,916 + RALBFv3_RS02485 0.24 -2.9
556,916 + RALBFv3_RS02485 0.24 +0.6
556,917 - RALBFv3_RS02485 0.24 -0.4
556,917 - RALBFv3_RS02485 0.24 -2.6
556,917 - RALBFv3_RS02485 0.24 -1.0
557,059 - RALBFv3_RS02485 0.30 -2.3
557,059 - RALBFv3_RS02485 0.30 -0.0

Or see this region's nucleotide sequence