Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS01335

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS01320 and RALBFv3_RS01325 are separated by 157 nucleotidesRALBFv3_RS01325 and RALBFv3_RS01330 are separated by 44 nucleotidesRALBFv3_RS01330 and RALBFv3_RS01335 are separated by 69 nucleotidesRALBFv3_RS01335 and RALBFv3_RS01340 are separated by 176 nucleotides RALBFv3_RS01320: RALBFv3_RS01320 - peptidylprolyl isomerase, at 296,709 to 298,655 _RS01320 RALBFv3_RS01325: RALBFv3_RS01325 - tRNA-Asp, at 298,813 to 298,889 _RS01325 RALBFv3_RS01330: RALBFv3_RS01330 - tRNA-Val, at 298,934 to 299,009 _RS01330 RALBFv3_RS01335: RALBFv3_RS01335 - HU family DNA-binding protein, at 299,079 to 299,351 _RS01335 RALBFv3_RS01340: RALBFv3_RS01340 - endopeptidase La, at 299,528 to 301,948 _RS01340 Position (kb) 299 300Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 298.562 kb on - strandat 298.868 kb on + strand, within RALBFv3_RS01325at 298.881 kb on + strand, within RALBFv3_RS01325at 298.967 kb on - strand, within RALBFv3_RS01330at 298.975 kb on + strand, within RALBFv3_RS01330at 298.976 kb on - strand, within RALBFv3_RS01330at 299.001 kb on + strand, within RALBFv3_RS01330

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
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298,562 - -3.9
298,868 + RALBFv3_RS01325 0.71 +0.5
298,881 + RALBFv3_RS01325 0.88 +0.3
298,967 - RALBFv3_RS01330 0.43 -0.2
298,975 + RALBFv3_RS01330 0.54 +0.9
298,976 - RALBFv3_RS01330 0.55 -0.3
299,001 + RALBFv3_RS01330 0.88 -0.3

Or see this region's nucleotide sequence