Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS00220

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS00210 and RALBFv3_RS00215 are separated by 93 nucleotidesRALBFv3_RS00215 and RALBFv3_RS23580 are separated by 68 nucleotidesRALBFv3_RS23580 and RALBFv3_RS00220 are separated by 138 nucleotidesRALBFv3_RS00220 and RALBFv3_RS00225 are separated by 31 nucleotides RALBFv3_RS00210: RALBFv3_RS00210 - DNA repair protein RadA, at 44,770 to 46,134 _RS00210 RALBFv3_RS00215: RALBFv3_RS00215 - disulfide bond formation protein B, at 46,228 to 46,707 _RS00215 RALBFv3_RS23580: RALBFv3_RS23580 - hypothetical protein, at 46,776 to 46,982 _RS23580 RALBFv3_RS00220: RALBFv3_RS00220 - CoA transferase, at 47,121 to 48,227 _RS00220 RALBFv3_RS00225: RALBFv3_RS00225 - glutathione ABC transporter ATP-binding protein, at 48,259 to 50,382 _RS00225 Position (kb) 47 48 49Strain fitness (log2 ratio) -2 -1 0 1at 46.479 kb on - strand, within RALBFv3_RS00215at 46.479 kb on - strand, within RALBFv3_RS00215at 47.136 kb on + strandat 47.137 kb on - strandat 47.154 kb on + strandat 47.154 kb on + strandat 47.761 kb on + strand, within RALBFv3_RS00220at 47.762 kb on - strand, within RALBFv3_RS00220

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
remove
46,479 - RALBFv3_RS00215 0.52 +0.5
46,479 - RALBFv3_RS00215 0.52 -2.5
47,136 + +0.3
47,137 - +0.5
47,154 + -0.8
47,154 + -1.0
47,761 + RALBFv3_RS00220 0.58 -0.4
47,762 - RALBFv3_RS00220 0.58 -1.8

Or see this region's nucleotide sequence