Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5894

Experiment: nitrogen source nitrite 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5892 and Pf1N1B4_5893 overlap by 4 nucleotidesPf1N1B4_5893 and Pf1N1B4_5894 overlap by 8 nucleotidesPf1N1B4_5894 and Pf1N1B4_5895 are separated by 12 nucleotides Pf1N1B4_5892 - FIG00961753: hypothetical protein, at 336,034 to 336,216 _5892 Pf1N1B4_5893 - Mycofactocin system glycosyltransferase, at 336,213 to 337,190 _5893 Pf1N1B4_5894 - Glycosyltransferase, at 337,183 to 338,319 _5894 Pf1N1B4_5895 - FIG00958408: hypothetical protein, at 338,332 to 339,333 _5895 Position (kb) 337 338 339Strain fitness (log2 ratio) -2 -1 0 1at 336.252 kb on + strandat 336.252 kb on + strandat 336.279 kb on - strandat 337.015 kb on + strand, within Pf1N1B4_5893at 337.016 kb on - strand, within Pf1N1B4_5893at 337.078 kb on + strand, within Pf1N1B4_5893at 337.079 kb on - strandat 337.079 kb on - strand, within Pf1N1B4_5893at 337.225 kb on + strandat 337.225 kb on + strandat 337.225 kb on + strandat 337.226 kb on - strandat 337.226 kb on - strandat 337.364 kb on + strand, within Pf1N1B4_5894at 337.712 kb on - strand, within Pf1N1B4_5894at 337.876 kb on + strand, within Pf1N1B4_5894at 337.877 kb on - strand, within Pf1N1B4_5894at 338.018 kb on - strand, within Pf1N1B4_5894at 338.018 kb on - strandat 338.979 kb on - strand, within Pf1N1B4_5895

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 1mM
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336,252 + +0.5
336,252 + -2.6
336,279 - +0.0
337,015 + Pf1N1B4_5893 0.82 -0.5
337,016 - Pf1N1B4_5893 0.82 +0.4
337,078 + Pf1N1B4_5893 0.88 -0.3
337,079 - -0.8
337,079 - Pf1N1B4_5893 0.89 -1.6
337,225 + -0.1
337,225 + +0.1
337,225 + +0.2
337,226 - -0.7
337,226 - +0.0
337,364 + Pf1N1B4_5894 0.16 -1.5
337,712 - Pf1N1B4_5894 0.47 -1.2
337,876 + Pf1N1B4_5894 0.61 -0.7
337,877 - Pf1N1B4_5894 0.61 -0.6
338,018 - Pf1N1B4_5894 0.73 +0.7
338,018 - +0.1
338,979 - Pf1N1B4_5895 0.65 -1.8

Or see this region's nucleotide sequence