Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5574

Experiment: nitrogen source nitrate 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5573 and Pf1N1B4_5574 are separated by 98 nucleotidesPf1N1B4_5574 and Pf1N1B4_5575 are separated by 749 nucleotides Pf1N1B4_5573 - hypothetical protein, at 344,053 to 344,199 _5573 Pf1N1B4_5574 - hypothetical protein, at 344,298 to 344,504 _5574 Pf1N1B4_5575 - hypothetical protein, at 345,254 to 345,634 _5575 Position (kb) 344 345Strain fitness (log2 ratio) -2 -1 0 1at 343.363 kb on + strandat 343.363 kb on + strandat 343.364 kb on - strandat 343.364 kb on - strandat 343.364 kb on - strandat 343.486 kb on - strandat 343.560 kb on - strandat 343.564 kb on - strandat 343.565 kb on + strandat 343.565 kb on + strandat 343.566 kb on - strandat 343.566 kb on - strandat 343.566 kb on - strandat 343.681 kb on - strandat 343.801 kb on + strandat 343.802 kb on - strandat 343.802 kb on - strandat 343.802 kb on - strandat 343.837 kb on - strandat 343.919 kb on - strandat 343.919 kb on - strandat 343.919 kb on - strandat 343.919 kb on - strandat 343.919 kb on - strandat 343.920 kb on + strandat 343.920 kb on + strandat 343.963 kb on - strandat 343.992 kb on + strandat 343.992 kb on + strandat 343.993 kb on - strandat 343.993 kb on - strandat 343.993 kb on - strandat 343.993 kb on - strandat 343.993 kb on - strandat 343.993 kb on - strandat 344.252 kb on - strandat 344.252 kb on - strandat 344.252 kb on - strandat 344.252 kb on - strandat 344.252 kb on - strandat 344.252 kb on - strandat 344.362 kb on - strand, within Pf1N1B4_5574at 344.362 kb on - strand, within Pf1N1B4_5574at 344.388 kb on - strand, within Pf1N1B4_5574at 344.674 kb on + strandat 344.675 kb on - strandat 344.675 kb on - strandat 344.675 kb on - strandat 344.675 kb on - strandat 344.675 kb on - strandat 344.779 kb on - strandat 344.885 kb on + strandat 344.885 kb on + strandat 344.886 kb on - strandat 344.886 kb on - strandat 344.995 kb on - strandat 345.001 kb on + strandat 345.002 kb on - strandat 345.004 kb on + strandat 345.005 kb on - strandat 345.005 kb on - strandat 345.016 kb on - strandat 345.020 kb on - strandat 345.020 kb on - strandat 345.053 kb on - strandat 345.093 kb on + strandat 345.178 kb on - strandat 345.255 kb on + strandat 345.343 kb on - strand, within Pf1N1B4_5575at 345.378 kb on - strandat 345.380 kb on + strand, within Pf1N1B4_5575at 345.380 kb on + strand, within Pf1N1B4_5575at 345.416 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrate 5mM
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343,363 + +0.7
343,363 + +1.6
343,364 - +0.5
343,364 - -1.2
343,364 - -0.0
343,486 - -0.4
343,560 - +1.3
343,564 - +0.6
343,565 + -0.5
343,565 + -1.5
343,566 - +0.7
343,566 - +1.6
343,566 - +0.5
343,681 - +0.1
343,801 + +0.3
343,802 - -1.4
343,802 - +0.3
343,802 - +0.8
343,837 - -1.9
343,919 - -0.9
343,919 - -1.0
343,919 - +0.1
343,919 - -2.0
343,919 - -0.0
343,920 + +0.0
343,920 + -0.3
343,963 - -0.4
343,992 + -2.0
343,992 + -2.3
343,993 - +1.0
343,993 - -1.2
343,993 - -0.1
343,993 - -0.1
343,993 - -0.4
343,993 - +1.0
344,252 - -0.3
344,252 - -0.4
344,252 - -1.1
344,252 - +0.5
344,252 - -1.0
344,252 - -0.8
344,362 - Pf1N1B4_5574 0.31 -1.7
344,362 - Pf1N1B4_5574 0.31 -0.1
344,388 - Pf1N1B4_5574 0.43 -1.6
344,674 + -0.7
344,675 - +1.3
344,675 - +0.0
344,675 - +0.4
344,675 - -1.8
344,675 - +0.4
344,779 - +0.4
344,885 + +0.7
344,885 + -1.5
344,886 - +0.2
344,886 - -1.2
344,995 - +0.2
345,001 + +0.4
345,002 - -1.1
345,004 + -0.5
345,005 - +0.4
345,005 - -0.0
345,016 - +0.5
345,020 - -0.1
345,020 - -1.0
345,053 - -0.0
345,093 + -1.1
345,178 - +0.4
345,255 + +1.4
345,343 - Pf1N1B4_5575 0.23 -1.4
345,378 - +0.6
345,380 + Pf1N1B4_5575 0.33 -1.1
345,380 + Pf1N1B4_5575 0.33 +0.6
345,416 - +0.4

Or see this region's nucleotide sequence