Experiment: nitrogen source nitrate 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5068 and Pf1N1B4_5069 are separated by 202 nucleotides Pf1N1B4_5069 and Pf1N1B4_5070 overlap by 4 nucleotides Pf1N1B4_5070 and Pf1N1B4_5071 are separated by 233 nucleotides
Pf1N1B4_5068 - FIG00974267: hypothetical protein, at 5,613,706 to 5,614,368
_5068
Pf1N1B4_5069 - Demethylmenaquinone methyltransferase, at 5,614,571 to 5,615,005
_5069
Pf1N1B4_5070 - Aspartate aminotransferase (EC 2.6.1.1), at 5,615,002 to 5,616,216
_5070
Pf1N1B4_5071 - FIG00959535: hypothetical protein, at 5,616,450 to 5,617,673
_5071
Position (kb) 5615
5616
5617 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5614.435 kb on - strand at 5614.692 kb on + strand, within Pf1N1B4_5069 at 5614.732 kb on - strand, within Pf1N1B4_5069 at 5614.888 kb on + strand, within Pf1N1B4_5069 at 5614.889 kb on - strand, within Pf1N1B4_5069 at 5615.327 kb on - strand, within Pf1N1B4_5070 at 5615.555 kb on - strand, within Pf1N1B4_5070 at 5615.632 kb on + strand at 5615.632 kb on + strand, within Pf1N1B4_5070 at 5615.632 kb on + strand, within Pf1N1B4_5070 at 5615.632 kb on + strand, within Pf1N1B4_5070 at 5615.633 kb on - strand, within Pf1N1B4_5070 at 5615.633 kb on - strand, within Pf1N1B4_5070 at 5615.633 kb on - strand, within Pf1N1B4_5070 at 5615.633 kb on - strand, within Pf1N1B4_5070 at 5615.633 kb on - strand, within Pf1N1B4_5070 at 5615.633 kb on - strand, within Pf1N1B4_5070 at 5615.666 kb on - strand at 5615.666 kb on - strand, within Pf1N1B4_5070 at 5615.986 kb on + strand, within Pf1N1B4_5070 at 5615.986 kb on + strand at 5615.987 kb on - strand, within Pf1N1B4_5070 at 5616.201 kb on + strand at 5616.222 kb on - strand at 5616.296 kb on + strand at 5616.297 kb on - strand at 5616.310 kb on - strand at 5616.345 kb on - strand at 5617.002 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrate 5mM remove 5,614,435 - +0.5 5,614,692 + Pf1N1B4_5069 0.28 -0.1 5,614,732 - Pf1N1B4_5069 0.37 +0.1 5,614,888 + Pf1N1B4_5069 0.73 +1.3 5,614,889 - Pf1N1B4_5069 0.73 -2.9 5,615,327 - Pf1N1B4_5070 0.27 +0.1 5,615,555 - Pf1N1B4_5070 0.46 -0.6 5,615,632 + -1.4 5,615,632 + Pf1N1B4_5070 0.52 +0.4 5,615,632 + Pf1N1B4_5070 0.52 +0.7 5,615,632 + Pf1N1B4_5070 0.52 +0.7 5,615,633 - Pf1N1B4_5070 0.52 -1.5 5,615,633 - Pf1N1B4_5070 0.52 -0.1 5,615,633 - Pf1N1B4_5070 0.52 +0.5 5,615,633 - Pf1N1B4_5070 0.52 +0.1 5,615,633 - Pf1N1B4_5070 0.52 +0.9 5,615,633 - Pf1N1B4_5070 0.52 -0.1 5,615,666 - +0.8 5,615,666 - Pf1N1B4_5070 0.55 +0.9 5,615,986 + Pf1N1B4_5070 0.81 +1.5 5,615,986 + -0.7 5,615,987 - Pf1N1B4_5070 0.81 -0.5 5,616,201 + +1.2 5,616,222 - -0.2 5,616,296 + +1.3 5,616,297 - -2.8 5,616,310 - +1.5 5,616,345 - +0.7 5,617,002 + +0.1
Or see this region's nucleotide sequence